CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_ZYGBA (3-isopropylmalate dehydrogenase OS=Zygosaccharomyces bailii GN=LEU2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.577e-18
Identity = 55/168 (32.74%), Postives = 95/168 (56.55%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-----EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN++  +     +V   +  ++P++T +  +ID+  M+L+KNP   + +++  N++ DIISD  + + G LGL PS ++           L E  HGSAPD+  K   NP A++LS+  ML+  L +  + + ++ A+   +  G  RT DLGGS++TS+   AI
Sbjct:  188 LDKANVLASSRLWRKTVEETIKNEFPQLTVKHQLIDSAAMILIKNPTQLNGIIITSNMFEDIISDEASVIPGSLGLLPSASLASLPDTNEAFGLYEPCHGSAPDLP-KGKVNPVAMILSAAMMLKLSLNMAKEGEALETAVKQVLDSG-VRTGDLGGSNSTSEVGDAI 353          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_CANAL (3-isopropylmalate dehydrogenase OS=Candida albicans GN=LEU2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.577e-18
Identity = 55/170 (32.35%), Postives = 98/170 (57.65%), Query Frame = -2
Query:  240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-----EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728
            + KAN++  +     +V + ++E++P ++ +  +ID+  M+L++NP     +++  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+   N  NP A +LS+ +MLR  L+   + + ++ A+   +  G  RTADL G+S+T++   AI +
Sbjct:  196 LDKANVLASSRLWRKTVDKVISEEFPALSVQHQLIDSAAMILIQNPTKLSGIIITSNMFGDIISDEASVIPGSLGLLPSASLASLPDTNTAFGLYEPCHGSAPDLPA-NKVNPIATILSAASMLRLALDCVKETEALEEAVKQVLDSG-IRTADLRGTSSTTEVGDAIAE 363          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_KLUMA (3-isopropylmalate dehydrogenase OS=Kluyveromyces marxianus GN=LEU2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 55/168 (32.74%), Postives = 96/168 (57.14%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-----EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN++  +     +V   +  ++P++T +  +ID+  M+LVK+P   + +++  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+   N  NP A +LS+  ML+  L+L ++   ++ A+   +  G  RT DLGGS++T++   A+
Sbjct:  185 LDKANVLASSRLWRKTVEETIKNEFPQLTVQHQLIDSAAMILVKSPTKLNGIVITNNMFGDIISDEASVIPGSLGLLPSASLASLPDTNKAFGLYEPCHGSAPDLPA-NKVNPIATILSAAMMLKLSLDLVEEGRAVEEAVRKVLDSG-IRTGDLGGSNSTTEVGDAV 350          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_KLULA (3-isopropylmalate dehydrogenase OS=Kluyveromyces lactis GN=LEU2 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 57/168 (33.93%), Postives = 97/168 (57.74%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-----EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN++  +     +V   +  ++P++T +  +ID+  M+LVK+P   + V++  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+   N  NP A +LS+  ML+  L+L ++   ++ A+ + +  G  RT DLGGS++T++   AI
Sbjct:  188 LDKANVLASSRLWRKTVEETIKTEFPQLTVQHQLIDSAAMILVKSPTKLNGVVITNNMFGDIISDEASVIPGSLGLLPSASLASLPDTNKAFGLYEPCHGSAPDLPA-NKVNPIATILSAAMMLKLSLDLVEEGRALEEAVRNVLDAG-VRTGDLGGSNSTTEVGDAI 353          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BACFR (3-isopropylmalate dehydrogenase OS=Bacteroides fragilis GN=leuB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 47/148 (31.76%), Postives = 87/148 (58.78%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADL 728
            + KAN++  +  L+  + +E+A +YPE+T + + +DN  M +++ P  FDV+V  N +GDI++D  + + G +GL PS + GE    + E +HGS P   G N+ANP A +LS   +  + +   +   I+ A+ +++ +   RT ++
Sbjct:  185 VDKANVLASSR-LWRQIAQEMAPQYPEVTTDYMFVDNAAMKMIQEPKFFDVMVTENTFGDILTDEGSVISGSMGLLPSASTGE-STPVFEPIHGSWPQAKGLNIANPLAQILSVAMLFEYFDCKAEGALIRKAVDASL-DANVRTPEI 329          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BACFN (3-isopropylmalate dehydrogenase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=leuB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 47/148 (31.76%), Postives = 87/148 (58.78%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADL 728
            + KAN++  +  L+  + +E+A +YPE+T + + +DN  M +++ P  FDV+V  N +GDI++D  + + G +GL PS + GE    + E +HGS P   G N+ANP A +LS   +  + +   +   I+ A+ +++ +   RT ++
Sbjct:  185 VDKANVLASSR-LWRQIAQEMAPQYPEVTTDYMFVDNAAMKMIQEPKFFDVMVTENTFGDILTDEGSVISGSMGLLPSASTGE-STPVFEPIHGSWPQAKGLNIANPLAQILSVAMLFEYFDCKAEGALIRKAVDASL-DANVRTPEI 329          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_ASHGO (3-isopropylmalate dehydrogenase OS=Ashbya gossypii GN=LEU2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 62/169 (36.69%), Postives = 95/169 (56.21%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNI-----GEGGIALAEAVHGSAPDI-AGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN++  +     +V      ++P +  +  +ID+  M+LVKNP AF+ V+V  N++GDIISD  + + G LGL PS ++      +    L E  HGSAPD+ AGK  ANP   +LS+  ML+  L +    + ++ A+   +  G  RT DL GSS+TS+   AI
Sbjct:  190 LDKANVLASSRLWRKTVEETFQSEFPNVQLQHQLIDSAAMILVKNPRAFNGVVVTSNMFGDIISDEASVIPGSLGLLPSASLASLPDSKSAFGLYEPCHGSAPDLPAGK--ANPIGCILSAAMMLKLSLNMVAAGEAVEQAVQEVLDSG-VRTGDLLGSSSTSEVGDAI 355          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_CALNO (Isocitrate dehydrogenase [NADP] OS=Caldococcus noboribetus GN=icd PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 64/192 (33.33%), Postives = 96/192 (50.00%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVC---------------REVAEKY----PE--ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADL----GGSS--TTSDFTKAICDHL 728
            +HK NIM+ T+G F                    EV  KY    PE  I   + + DN    ++  P  ++V+V PNL GD ISD    L+GG+G+    ++G+ GIA+AE VHGSAP  AGKN+ NPTA +LS + +L       +   +    +      K  T DL    GG +  +T+++T  + D++
Sbjct:  228 MHKGNIMKYTEGAFRQWAYDLILSEFRDYVVTEEEVNTKYGGKAPEGKIIVNDRIADNMLQQIITRPGEYNVIVTPNLNGDYISDEANALVGGIGMAAGLDMGD-GIAVAEPVHGSAPKYAGKNVINPTAEILSGMYLLSDFVGWPEVKLLVEYAVKQAIAHKQVTYDLAREMGGVTPISTTEYTDVLVDYI 418          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_ECOLI (Isocitrate dehydrogenase [NADP] OS=Escherichia coli (strain K12) GN=icd PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 55/150 (36.67%), Postives = 80/150 (53.33%), Query Frame = -2
Query:  339 IHKANIMQKTDGLF*SVCREVAE----------------KYP----EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRI 728
            +HK NIM+ T+G F     ++A                 K P    EI  ++V+ D     ++  PA +DV+   NL GD ISD  A  +GG+G+ P  NIG+   AL EA HG+AP  AG++  NP +++LS+  MLRH+   + AD I
Sbjct:  228 VHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGD-ECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLI 376          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_PICST (3-isopropylmalate dehydrogenase OS=Pichia stipitis GN=LEU2 PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.205e-17
Identity = 55/168 (32.74%), Postives = 98/168 (58.33%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-----EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN++  +     +V + + E++P++T +  +ID+  M+LV++P   + +++  N++GDIISD  + + G LGL PS ++           L E  HGSAPD+  +N  NP A +LS   MLR  L+   +A+ ++ A+   +  G  RTADL G+++T +  +A+
Sbjct:  196 LDKANVLASSRLWRKTVDKVMKEEFPQLTIQHQLIDSAAMILVQSPTKLNGIVITSNMFGDIISDEASVIPGSLGLLPSASLASLPDTNSAFGLYEPCHGSAPDLP-ENKVNPIATILSVAMMLRLSLDSLKEAEALEEAVRQVLDSG-VRTADLRGTNSTKEVGEAV 361          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_ZYGBA7.577e-1832.743-isopropylmalate dehydrogenase OS=Zygosaccharomyc... [more]
LEU3_CANAL7.577e-1832.353-isopropylmalate dehydrogenase OS=Candida albican... [more]
LEU3_KLUMA9.896e-1832.743-isopropylmalate dehydrogenase OS=Kluyveromyces m... [more]
LEU3_KLULA9.896e-1833.933-isopropylmalate dehydrogenase OS=Kluyveromyces l... [more]
LEU3_BACFR9.896e-1831.763-isopropylmalate dehydrogenase OS=Bacteroides fra... [more]
LEU3_BACFN9.896e-1831.763-isopropylmalate dehydrogenase OS=Bacteroides fra... [more]
LEU3_ASHGO9.896e-1836.693-isopropylmalate dehydrogenase OS=Ashbya gossypii... [more]
IDH_CALNO9.896e-1833.33Isocitrate dehydrogenase [NADP] OS=Caldococcus nob... [more]
IDH_ECOLI1.688e-1736.67Isocitrate dehydrogenase [NADP] OS=Escherichia col... [more]
LEU3_PICST2.205e-1732.743-isopropylmalate dehydrogenase OS=Pichia stipitis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
back to top