CX296796

Overview
NameCX296796
Unique NameCX296796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length317
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.244e-41
Identity = 79/104 (75.96%), Postives = 85/104 (81.73%), Query Frame = 2
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTF+QP+MT++K
Sbjct:  293 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDK 396          
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.848e-41
Identity = 77/104 (74.04%), Postives = 86/104 (82.69%), Query Frame = 2
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EK
Sbjct:  293 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEK 396          
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 3.399e-40
Identity = 79/104 (75.96%), Postives = 83/104 (79.81%), Query Frame = 2
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK+          K LVNS+E  P FEQP MT EK
Sbjct:  289 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEK 392          
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.399e-40
Identity = 77/104 (74.04%), Postives = 84/104 (80.77%), Query Frame = 2
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EK
Sbjct:  293 TLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEK 396          
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.093e-38
Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = 2
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 316
            TLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVRKW          K LVNSK+  P FEQP MT++K
Sbjct:  287 TLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQK 390          
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.869e-30
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 2
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTME 313
            TLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR+W          + LVN+++       P+++M+
Sbjct:  262 TLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV---AMPKVSMD 361          
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.765e-26
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 2
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTM 310
            TLYAPLIRDGRMEKFYW P R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R +            +VNS E  P F++P  T+
Sbjct:  162 TLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTL 263          
BLAST of CX296796 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.811e-25
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 2
Query:    5 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTM 310
            TLYAPLIRDGRMEKFYW P R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R +            +VNS EA P F++P  ++
Sbjct:  162 TLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSL 263          
The following BLAST results are available for this feature:
BLAST of CX296796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA_PHAVU5.244e-4175.96Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC6.848e-4174.04Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH3.399e-4075.96Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC3.399e-4074.04Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.093e-3872.12Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.869e-3061.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC4.765e-2650.98Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP1.811e-2551.96Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC05802H08SK FerrChloL1 Citrus clementina cDNA clone C05802H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296796 ID=CX296796; Name=CX296796; organism=Citrus clementina; type=EST; length=317bp
TCTCACATTGTATGCTCCTCTCATCCGTGATGGTCGTATGGAGAAATTCT
ACTGGGCACCTACAAGGGAGGACCGTATTGGTGTGTGCAAGGGTATCTTC
AGGAATGACAATGTGGCTGATGACGACATTGTCAAGCTTGTCGACACCTT
CCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGAGGGCCAGAGTCTATG
ATGATGAGGTGAGGAAGTGGATCTCTGGTGTTGGTGTTGGAAGCATTGGC
AAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCAACCAAG
GATGACAATGGAGAAGC
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