CX296802

Overview
NameCX296802
Unique NameCX296802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_DICDI (Eukaryotic translation initiation factor 1A OS=Dictyostelium discoideum GN=eif1a PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.947e-37
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = -1
Query:  369 KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 680
            +RGKNE +++KREL FKE+GQEYAQVLRMLGNGR EA C DG KRLCHI G++ KK WI  GDIIL+ LRDYQ+DKADVIL+Y  DEAR LK YGELPE+ R+N
Sbjct:   13 RRGKNE-NEQKRELQFKEEGQEYAQVLRMLGNGRLEASCFDGEKRLCHISGRLRKKEWINNGDIILIQLRDYQNDKADVILRYNVDEARNLKTYGELPETARIN 115          
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_YEAST (Eukaryotic translation initiation factor 1A OS=Saccharomyces cerevisiae GN=TIF11 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.079e-35
Identity = 67/104 (64.42%), Postives = 84/104 (80.77%), Query Frame = -1
Query:  369 KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 680
            +RGKN++D  KREL++KE+GQEYAQ+ +MLGNGR EA C DG KR+ HIRGK+ KKVW+  GDIILV LRD+QDD+ DV+ KY  DEAR LK  GELPE+ ++N
Sbjct:   13 RRGKNDSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDIILVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKIN 116          
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_SCHPO (Eukaryotic translation initiation factor 1A OS=Schizosaccharomyces pombe GN=tif11 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.347e-34
Identity = 69/104 (66.35%), Postives = 83/104 (79.81%), Query Frame = -1
Query:  369 KRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 680
            +RGKNE ++EKREL + E+GQ YAQV +MLGNGR EA C DG KRL HIRGK+ KKVWI  GDIIL+ LR++QD+K DVILKY  DEAR LK  GELPE+ ++N
Sbjct:   13 RRGKNENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLREFQDEKGDVILKYTADEARTLKNQGELPETAKIN 116          
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_NATPD (Translation initiation factor 1A OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif1a PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = -1
Query:  381 ADDEKRELVFKEDGQE-YAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPES 662
            +D+E R+ +   +G E +A V  MLG  R +  C+DGT+R   I G+M K++WI   D++LV   D+QD+KADV+ +Y   EA  L+  G + +S
Sbjct:    2 SDNEGRKNLRMPEGDEVFAVVTNMLGANRVKVRCMDGTERTARIPGRMQKRIWIREDDVVLVEPWDWQDEKADVVWRYEKQEADQLREEGHITDS 96          
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_METKA (Translation initiation factor 1A OS=Methanopyrus kandleri GN=eIF1A PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 36/97 (37.11%), Postives = 58/97 (59.79%), Query Frame = -1
Query:  384 GKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 674
            GK   D+  +++   ++G+ +  V +MLGN R +  C+DG  R+  I GKM K+VWI  GD++LV   ++Q ++ADV  +Y   +   LK  G+L E
Sbjct:    2 GKRIDDETLKKIRLPKEGEIFGVVEKMLGNDRVQVRCVDGKTRVARIPGKMRKRVWIREGDVVLVKPWEFQPERADVTWRYTRVQVDWLKRKGKLDE 98          
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_HALMA (Translation initiation factor 1A OS=Haloarcula marismortui GN=eif1a PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 34/92 (36.96%), Postives = 55/92 (59.78%), Query Frame = -1
Query:  384 DDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 659
            +D ++ L   E+ + +A V+ MLG  R +  C+DG +R   I GKM K++WI   D++LV   D+QD+KAD+  +Y   +A  L+  G + E
Sbjct:    4 NDSRKNLRMPEEDEVFAVVMDMLGANRVKVRCMDGVERTARIPGKMQKRIWIREDDVVLVEPWDWQDEKADITWRYEKQDADQLREEGHIQE 95          
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_SULIY (Translation initiation factor 1A OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  408 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 647
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_SULIN (Translation initiation factor 1A OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  408 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 647
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_SULIM (Translation initiation factor 1A OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  408 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 647
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_SULIL (Translation initiation factor 1A OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  408 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 647
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
The following BLAST results are available for this feature:
BLAST of CX296802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
IF1A_DICDI4.947e-3772.12Eukaryotic translation initiation factor 1A OS=Dic... [more]
IF1A_YEAST2.079e-3564.42Eukaryotic translation initiation factor 1A OS=Sac... [more]
IF1A_SCHPO1.347e-3466.35Eukaryotic translation initiation factor 1A OS=Sch... [more]
IF1A_NATPD2.236e-1340.00Translation initiation factor 1A OS=Natronomonas p... [more]
IF1A_METKA3.814e-1337.11Translation initiation factor 1A OS=Methanopyrus k... [more]
IF1A_HALMA6.507e-1336.96Translation initiation factor 1A OS=Haloarcula mar... [more]
IF1A_SULIY1.893e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIN1.893e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIM1.893e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIL1.893e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]

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Properties
Property NameValue
Genbank descriptionC05803A02SK FerrChloL1 Citrus clementina cDNA clone C05803A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296802 ID=CX296802; Name=CX296802; organism=Citrus clementina; type=EST; length=680bp
CCTAATTGCCACAACAAATTATTATTGACATTAAAGATCTGCACCATACC
AGTATAAGATTCCATTCTAGAAATACCACTTCAAAAAAAGTGCAGAACTA
AACAAAATTAATAAGCAAGTAATAGGCGTTACACAAAATATGACAGGCTC
ACCATTAAAAATTCCAAATATATAAGCTGCAAACACATATTTTCAGCTTT
TAAGTAACCAATACATTGGCATACTCCATTTTTGCTAAATATTGAACATA
AACCCCAGACAGAGTCGATTCTCGGAGCCTAGATCTTATCAATATCTTCG
TCTTCAAACTCGATGTAATCATTATCAGCGCCATCATCCTCTTCATCAAG
ACCACCAGCAATGCCCTCATTGAGACGGGTACTCTCTGGAAGTTCACCAT
AAGCCTTCAGAAGCCTTGCCTCGTCGGGCATATACTTGAGGATGACATCA
GCCTTGTCATCCTGATAATCACGTAGGCCAACAAGTATTATATCACCAGC
TGCAATCCAAACCTTTTTGTGCATCTTCCCACGGATGTGGCAAAGACGCT
TGGTTCCATCGATGCACATAGCTTCACACCGACCATTGCCGAGCATACGA
AGGACTTGGGCATATTCCTGTCCGTCTTCCTTGAAGACAAGCTCACGCTT
CTCGTCGTCAGCTTCATTCTTTCCCCTCTT
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