CX296802

Overview
NameCX296802
Unique NameCX296802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296802 vs. ExPASy Swiss-Prot
Match: IF1A_SULAC (Translation initiation factor 1A OS=Sulfolobus acidocaldarius GN=eif1a PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = -1 
Query:  408 KNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 671
            K+  +   RE+V   +G+    V ++ G    + +C DG +RL  I GK+ KKVWI  GD++L    D+Q +K D++ +Y   E R L
Sbjct:    5 KSNTEQPTREVVKPIEGEVICVVKKLFGGEHVQVICTDGKERLGRIPGKLKKKVWIREGDVVLAAPWDFQPNKCDIVYRYTESEVRRL 92
The following BLAST results are available for this feature:
BLAST of CX296802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
IF1A_SULAC7.954e-1135.23Translation initiation factor 1A OS=Sulfolobus aci... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803A02SK FerrChloL1 Citrus clementina cDNA clone C05803A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296802 ID=CX296802; Name=CX296802; organism=Citrus clementina; type=EST; length=680bp
CCTAATTGCCACAACAAATTATTATTGACATTAAAGATCTGCACCATACC
AGTATAAGATTCCATTCTAGAAATACCACTTCAAAAAAAGTGCAGAACTA
AACAAAATTAATAAGCAAGTAATAGGCGTTACACAAAATATGACAGGCTC
ACCATTAAAAATTCCAAATATATAAGCTGCAAACACATATTTTCAGCTTT
TAAGTAACCAATACATTGGCATACTCCATTTTTGCTAAATATTGAACATA
AACCCCAGACAGAGTCGATTCTCGGAGCCTAGATCTTATCAATATCTTCG
TCTTCAAACTCGATGTAATCATTATCAGCGCCATCATCCTCTTCATCAAG
ACCACCAGCAATGCCCTCATTGAGACGGGTACTCTCTGGAAGTTCACCAT
AAGCCTTCAGAAGCCTTGCCTCGTCGGGCATATACTTGAGGATGACATCA
GCCTTGTCATCCTGATAATCACGTAGGCCAACAAGTATTATATCACCAGC
TGCAATCCAAACCTTTTTGTGCATCTTCCCACGGATGTGGCAAAGACGCT
TGGTTCCATCGATGCACATAGCTTCACACCGACCATTGCCGAGCATACGA
AGGACTTGGGCATATTCCTGTCCGTCTTCCTTGAAGACAAGCTCACGCTT
CTCGTCGTCAGCTTCATTCTTTCCCCTCTT
back to top