CX296806

Overview
NameCX296806
Unique NameCX296806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296806 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.896e-30
Identity = 77/151 (50.99%), Postives = 92/151 (60.93%), Query Frame = -2
Query:  221 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 664
            R  NV DP+S+D W   D F +       S A       N R+DWKETP AHVF ADLPG+R         +G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT           KAI ISG
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA-----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CX296806 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = -2
Query:  275 GGRRTNVFDPVSLDVWDPF-DGFLSSALTNAPSSARETSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 670
            GG      +PVS+D+ +PF D    +A   APS+A   +   + A +DWKET  AHVF AD+PG+R         E ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of CX296806 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.250e-25
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = -2
Query:  275 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 544
            AR+DWKETP+ HV   D+PGL+         E R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT+T
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of CX296806 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.250e-25
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = -2
Query:  275 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 550
            ++AR+DWKETP+ HV   D+PGL+         E R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENGVLT+T
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of CX296806 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = -2
Query:  278 RETS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 568
            R+TS   + AR+DWKET + H    D+PGL+         E  +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT+
Sbjct:   62 RDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of CX296806 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = -2
Query:  221 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 442
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT           KAIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CX296806 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.447e-22
Identity = 57/127 (44.88%), Postives = 82/127 (64.57%), Query Frame = -2
Query:  275 VFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 652
            +FD ++ D W+PF  F ++   +A   A +TS FAN  I+ +ET +A+VF+ADLP G++         EG +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVT
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of CX296806 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 62/154 (40.26%), Postives = 86/154 (55.84%), Query Frame = -2
Query:  278 LASQFAIMSLIPSIFGG--RRTNVFDPVSLDVWDPFDGFLSSALTNAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 715
            LAS  A  +L+P   GG  R   V +   L   DPF       L + P      + +  + AR+DW+ET  AH    D+PG+R         + R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:   20 LASTAADGALLPWFGGGGARDEAVPELGLLAAADPF-----RILEHVPFGFDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of CX296806 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 51/111 (45.95%), Postives = 73/111 (65.77%), Query Frame = -2
Query:  275 APSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEG-RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 583
            A ++A E +  A AR DWKETP+AHV   D+PG+R         E  R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A V +V A +++GVLTVT
Sbjct:   59 AAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          
BLAST of CX296806 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  275 NAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 586
            NAPS    R+    A    D KE P ++VF  D+PGL+         E  +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   30 NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of CX296806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS166_ORYSJ2.896e-3050.9916.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ5.653e-2645.5218.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN6.250e-2557.7822.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA6.250e-2555.4322.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH4.479e-2352.0422.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN1.702e-2274.32Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17B_ORYSJ8.447e-2244.8817.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS232_ORYSJ1.142e-1840.2623.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ2.543e-1845.9521.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE6.926e-1642.4517.3 kDa class II heat shock protein OS=Solanum pe... [more]

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Properties
Property NameValue
Genbank descriptionC05803A08SK FerrChloL1 Citrus clementina cDNA clone C05803A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296806 ID=CX296806; Name=CX296806; organism=Citrus clementina; type=EST; length=719bp
GCATCACACTTTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTG
GCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACA
GGGNGGAAGGGAAGAAAACAAACACACACACACATACAAACACACAAGGG
CTTTGCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAA
ACATTTACAGTTATCACTTAGCCAGAGATCTCAATAGCCTTAACTTCAGG
TTTCTTCTCCTCCTGTTTAGGAACGGTGACTGTGAGCACACCATTCTCCA
TGCTGGCCTTAACCTGTTCCACCTTAGCATTGTCGGGCAACCTGAACCTC
CTCAGGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTT
CTCTTCCTGCTCCTTGCTCCTCTCTCCGCTTATCTGCAGAATCCTGCCCT
CTTCAACCTCAACTTTTACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCT
TTGAATACGTGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGC
GAATTGGGATGTTTCCCTAGCCGAAGACGGCGCGTTGGTAAGGGCAGAGG
ACAAGAACCCGTCGAAAGGATCCCATACATCTAATGAAACTGGATCGAAC
ACGTTGGTTCTTCGGCCACCGAAGATGCTTGGAATGAGTGACATTATGGC
AAACTGGGACGCTAATTAA
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