CX296816

Overview
NameCX296816
Unique NameCX296816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296816 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 63/196 (32.14%), Postives = 84/196 (42.86%), Query Frame = -1
Query:  145 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 675
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG+VE  R      P  + ++                    YPGG F DPL LA          D +    LKV EIK+ RLAM +M  F+ +A
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLDPI------------------YPGGAF-DPLGLAD---------DPDAFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of CX296816 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.503e-13
Identity = 62/197 (31.47%), Postives = 81/197 (41.12%), Query Frame = -1
Query:  145 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 678
            +P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV  IK+ RLAM +M  F+ +A
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVVDPLYPGGS-FDPLGLA---------EDPEAFAELKVKHIKNGRLAMFSMFGFFVQA 233          
BLAST of CX296816 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 61/196 (31.12%), Postives = 81/196 (41.33%), Query Frame = -1
Query:  145 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 675
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG +E                      R A        +  YPGG  FDPL LA          D E    +KV E+K+ RLAM +M  F+ +A
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEG--------------------YRVAGGPLGEVVDPLYPGGT-FDPLGLA---------DDPEAFADVKVKELKNGRLAMFSMFGFFVQA 231          
BLAST of CX296816 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 61/196 (31.12%), Postives = 80/196 (40.82%), Query Frame = -1
Query:  145 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 675
            P +L G  PGDYG+D  GL  DP      RE E+IH  WAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R                     A        +  YPGG F DPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:    7 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPIYPGGSF-DPLGLAD---------DPEAFAELKVKELKNGRLAMFSMFGFFVQA 172          
BLAST of CX296816 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 63/196 (32.14%), Postives = 82/196 (41.84%), Query Frame = -1
Query:  145 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 675
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G    +  A +G+      W +AG+            +P  +   S  ++   Q+LLMG VE  R                     A        +  YPGG F DPL LA          D E    LKV E K+ RLAM +M  F+ +A
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYR--------------------VAGGPLGVVVDPLYPGGSF-DPLGLA---------EDPEAFAELKVKETKNGRLAMFSMFGFFIQA 233          
BLAST of CX296816 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 62/196 (31.63%), Postives = 83/196 (42.35%), Query Frame = -1
Query:  145 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF-------VGQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 675
            P +L G  PGDYG+D  GL   P      RE E+IH R AM+A +G         +GQ +    WF+AGA            +P  +   S  ++  T+++LMG VE  R                     A        +  YPG   FD L LA          DTE    LKV E+K+ RLAM +M  F+ +A
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYR--------------------IARGPLGEVTDPLYPGS--FDSLGLA---------EDTEAFAELKVKELKNGRLAMFSMFGFFVQA 234          
BLAST of CX296816 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 62/196 (31.63%), Postives = 80/196 (40.82%), Query Frame = -1
Query:  145 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 675
            P +L G  PGDYG+D   L  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVVDPLYPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
BLAST of CX296816 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 61/196 (31.12%), Postives = 81/196 (41.33%), Query Frame = -1
Query:  145 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 675
            P +L G  PGDYG+D  GL  DPA     R+ E+IH RW M   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    L+V EIK+ RLAM +M  F+ +A
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVIDPLYPGGS-FDPLGLA---------DDPEAFAELEVKEIKNGRLAMFSMFGFFVQA 232          
BLAST of CX296816 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 62/196 (31.63%), Postives = 82/196 (41.84%), Query Frame = -1
Query:  145 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 675
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R      P  + V                  +  YPGG  FDPL LA            +    LKV EIK+ RLAM +M  F+ +A
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAG--GPLGEIV------------------DPLYPGGS-FDPLGLA---------ERPQAFAELKVKEIKNGRLAMFSMFGFFVQA 232          
BLAST of CX296816 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 63/199 (31.66%), Postives = 84/199 (42.21%), Query Frame = -1
Query:  145 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS---GIP------WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 678
            +P    G  PGDYG+D  GL  DP   K YRE ELIH R  +   +G+   +  +   GI       WF+AGA            +P  I   +  + L  Q++LMG VE  R      P  + ++   P                   G+ FDPL LA          D +    LKV EIK+ RLAM A L F+ +A
Sbjct:   72 HPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNG--GPAGEGLDPLYP-------------------GEAFDPLGLA---------DDPDTFAELKVKEIKNGRLAMFACLGFFVQA 240          
The following BLAST results are available for this feature:
BLAST of CX296816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB21_GOSHI1.916e-1332.14Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB25_TOBAC2.503e-1331.47Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB29_MAIZE3.269e-1331.12Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_CUCSA3.269e-1331.12Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB22_PETSP4.269e-1332.14Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB2_MALDO5.576e-1331.63Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB25_PETSP7.282e-1331.63Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_PETSP7.282e-1331.12Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_WHEAT1.622e-1231.63Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_DUNSA2.767e-1231.66Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC05803B07SK FerrChloL1 Citrus clementina cDNA clone C05803B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296816 ID=CX296816; Name=CX296816; organism=Citrus clementina; type=EST; length=723bp
GAGGTTTTTTTACCCCATCAAATTGAACTCTCATTGAGGGAACTCATATA
CATCCGATTGATTACGCTTTAACACCAATCAGTGAGTTATCTACATAAGC
ATGTTTTACAAACCAAGAGCCCCAAGTGGCGTCTTGCCTTGGCCAGCTTC
AAAGTAGAAAATCAACATGGCCACCATAGCAAGCCTAGCATGTTTAATCT
CAGCAACTTTGAGCCTGTCAAGCTTCTCAGTGTCAGGAATGTAGACACCA
TCCTTAATTGTTCCAGCCAAACATAAGGGATCAAAAAACTTTCCACCAGG
GTAGCCTTGTTCACCAGTCGCATTGGCAAAGTTTTCAGCAGTTCTTGACC
AAGGTGTTGCCCATTCAACTGATTGAGATTCAGGATTGAAAAAATCAACC
CACCGCTTGCTCTCAACCCAACCCATAAGGAGAAGCTGGGTTCCCAGGAG
TGAGCCGAAGGAGAAGGGTGCTATGGCTCCAGGATCTGCTCCAGCCTCGA
ACCATGGAATCCCACTCCACGCCTGTCCGACGAATATCCCAACAACTGCA
GCCATTGCCCATCGTCCGTGGATCAGTTCTGCTTCTCTGTACCATTTCAG
GAATGCTGGGTCCTTTCCAAGCCCAAGTGGGTCGAATCCGTAGTCACCTG
GGAGAGAGCCATCGAGCCATTCGGGATTAAATGAGGTGCCACCACCTTTA
ACAGCAGGAATCCAAGATTTTTT
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