CX296816

Overview
NameCX296816
Unique NameCX296816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX296816 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 61/187 (32.62%), Postives = 83/187 (44.39%), Query Frame = -1 
Query:  145 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGAD---PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 675
            P +L G  PGDYG+D  GL  DP      RE E+IH RWA+A  +G    +  A +G+      WF+AG+     G ++     SL+  Q +L  W              Q V          E +  A G  G    +  DPL L G+        D E+   LKV EIK+ RLAM +M  F+ +A
Sbjct:   65 PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWA------------CQVVLMGA-----VEGYHVAGGRLG----EVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQA 230
The following BLAST results are available for this feature:
BLAST of CX296816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB48_MAIZE4.720e-1232.62Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC05803B07SK FerrChloL1 Citrus clementina cDNA clone C05803B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296816 ID=CX296816; Name=CX296816; organism=Citrus clementina; type=EST; length=723bp
GAGGTTTTTTTACCCCATCAAATTGAACTCTCATTGAGGGAACTCATATA
CATCCGATTGATTACGCTTTAACACCAATCAGTGAGTTATCTACATAAGC
ATGTTTTACAAACCAAGAGCCCCAAGTGGCGTCTTGCCTTGGCCAGCTTC
AAAGTAGAAAATCAACATGGCCACCATAGCAAGCCTAGCATGTTTAATCT
CAGCAACTTTGAGCCTGTCAAGCTTCTCAGTGTCAGGAATGTAGACACCA
TCCTTAATTGTTCCAGCCAAACATAAGGGATCAAAAAACTTTCCACCAGG
GTAGCCTTGTTCACCAGTCGCATTGGCAAAGTTTTCAGCAGTTCTTGACC
AAGGTGTTGCCCATTCAACTGATTGAGATTCAGGATTGAAAAAATCAACC
CACCGCTTGCTCTCAACCCAACCCATAAGGAGAAGCTGGGTTCCCAGGAG
TGAGCCGAAGGAGAAGGGTGCTATGGCTCCAGGATCTGCTCCAGCCTCGA
ACCATGGAATCCCACTCCACGCCTGTCCGACGAATATCCCAACAACTGCA
GCCATTGCCCATCGTCCGTGGATCAGTTCTGCTTCTCTGTACCATTTCAG
GAATGCTGGGTCCTTTCCAAGCCCAAGTGGGTCGAATCCGTAGTCACCTG
GGAGAGAGCCATCGAGCCATTCGGGATTAAATGAGGTGCCACCACCTTTA
ACAGCAGGAATCCAAGATTTTTT
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