CX296856

Overview
NameCX296856
Unique NameCX296856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 42/129 (32.56%), Postives = 69/129 (53.49%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKN 392
            ++ + +L  +MDGF  N  V V+ ATNR D LD ALLRPGR DR++    PD   +  I    +    L+++VD E    R    +GAD+ ++  E+ +LA R +   +   +   A + +I   E+++
Sbjct:  286 QRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PEX6_GLOLA (Peroxisomal biogenesis factor 6 OS=Glomerella lagenarium GN=PEX6 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 57/187 (30.48%), Postives = 92/187 (49.20%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSG----NSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR-VKILQVHSRGKALAKDVDFEKISRRTP-GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAY---HEAGHALVGALMPEYD-PVAKISIIPRGQAGGLTFF 536
            ++ ++QL  E+DG SG    + GV V+ ATNRPD+LD ALLRPGRFD+ + +   D   + +KIL+  +R   L   V    ++++ P  +TGAD   L ++A + A  R    +        +  + A P  +   +S       AY   H A    +  ++ E D   A   ++P   AG L+ +
Sbjct: 1113 DRIVSQLLAELDGMSGGDDTSGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQLKILEALTRKFTLHPSVSLHSVAQQLPFTYTGADFYALCSDAMLKAVTRQAASVDA-----KIRELEAQPRSRTGPIS------TAYFFDHHATPEDIAVMVTEEDFLAANRELVPSVSAGELSHY 1288          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PEX6_DICDI (Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 50/157 (31.85%), Postives = 78/157 (49.68%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVD-RPDVAGRVKILQVHSRGKALAKDVDFEKISRRTP-GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMP 470
            ++ ++QL  E+DG   +S V ++ ATNRPD+LDS+L+RPGR DR + +    +   + KILQ  +R   LA DVD  K+    P   TGAD   L ++A   A    +      EI++                 ++ +KL+ Y       V +L+P
Sbjct: 1038 DRVVSQLLAELDGMQKSSDVFIIGATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENCPMNLTGADFYALASDAMSNAFHERITASINGEINE----------------EEQNQKLIVYQNHFIKAVNSLVP 1178          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR----GKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR--DLKEISKDEI 347
            +  +NQL   +DG    + ++V+  TNR D++D ALLRPGR +  V +  PD  GR +I ++H+       AL KDV+    +  T  ++GA+++ ++  AA  A  R  D K I   EI
Sbjct:  352 DSVVNQLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQIFKIHTAKMRDQNALDKDVNLANYAHTTRNYSGAEIEGVVKSAASYAFSRQVDTKNIKNVEI 471          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: SPA5L_XENTR (Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus tropicalis GN=spata5l1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:    9 QTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILA 308
            + + QL T MDG   ++ ++ +AAT+RPD +D AL RPGRFDR+V +  P    R  IL++        +DVD   ++  T G+ GADL  L  +AA+ A
Sbjct:  313 RVVAQLLTLMDGIDSDNKMVTVAATSRPDAIDPALRRPGRFDREVIIGTPTHKQRQAILEMMISNMPTDRDVDAAALADVTVGYVGADLTALCRDAAMQA 412          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PEX6_CANGA (Peroxisomal biogenesis factor 6 OS=Candida glabrata GN=PEX6 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13
Identity = 42/114 (36.84%), Postives = 70/114 (61.40%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNS-GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR-VKILQVHSRGKALAKDVDFEKISRRTP-GFTGADLQNLMNEAAILAARRDLKEISK 338
            ++ ++QL  E+DG S +  GV ++ ATNRPD+LD ALLRPGRFD+ + +   D   +   I++  +R   ++ D++F+++    P  +TGAD   L ++A + A  R  KEI +
Sbjct:  837 DRIVSQLLAELDGMSSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIYLGIADTREKQANIMRALTRKFKVSSDINFDELVSDFPFSYTGADFYALCSDAMLKAMTRISKEIDE 950          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13
Identity = 41/115 (35.65%), Postives = 72/115 (62.61%), Query Frame = 3
Query:   21 QLFTEMDGFSGNSG------VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 347
            +L  +MDG  G S       V+VLAATN P  +D AL R  R ++++ +  P   GRV +L+++ +   LA DV+ +KI+ +  G++GAD+ N+  +A+++A RR ++ ++ +EI
Sbjct:  327 ELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDASLMAMRRRIEGLTPEEI 439          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PEX6_YEAST (Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisiae GN=PEX6 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13
Identity = 44/114 (38.60%), Postives = 70/114 (61.40%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNS-GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV-AGRVKILQVHSRGKALAKDVDFEKISRRTP-GFTGADLQNLMNEAAILAARRDLKEISK 338
            ++ ++QL  E+DG S ++ GV V+ ATNRPD+LD ALLRPGRFD+ + +  PD    ++ IL+  +R   L  DV   ++++  P  +TGAD   L ++A + A  R  + + K
Sbjct:  851 DRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKLLYLGIPDTDTKQLNILEALTRKFVLDNDVKLIELAKLCPFNYTGADFYALCSDAMLNAMSRIARMVEK 964          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13
Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSG---NSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV-AGRVKILQVHSRGKALAKDVDFEKISRRTP-GFTGADLQNLMNEAAILAARRDLKEISK 338
            ++ ++QL  E+DG SG     GV V+ ATNRPD+LD ALLRPGRFD+ + +   D    + KI+Q  +R   L   VD  +I+   P  +TGAD   L ++A + A  R    + K
Sbjct:  932 DRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEKQAKIIQALTRKFQLDPSVDLGRIAETCPFTYTGADFYALCSDAMLNAMTRTAGAVEK 1047          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13
Identity = 40/117 (34.19%), Postives = 74/117 (63.25%), Query Frame = 3
Query:   18 NQLFTEMDGFSGNSG-------VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 347
            ++L  +MDG SG S        V+VLAATN P  +D AL R  R ++++ +  P++ GR ++L+++ +   LA D+D + I+ +  G++GAD+ N+  +A+++A RR ++ +  +EI
Sbjct:  356 SELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDASMMAMRRRIQGLRPEEI 470          
The following BLAST results are available for this feature:
BLAST of CX296856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
PRS6B_BOVIN1.212e-1332.5626S protease regulatory subunit 6B OS=Bos taurus G... [more]
PEX6_GLOLA1.212e-1330.48Peroxisomal biogenesis factor 6 OS=Glomerella lage... [more]
PEX6_DICDI1.212e-1331.85Peroxisomal biogenesis factor 6 OS=Dictyostelium d... [more]
NSF_DICDI1.212e-1335.00Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]
SPA5L_XENTR1.582e-1340.00Spermatogenesis-associated protein 5-like protein ... [more]
PEX6_CANGA2.067e-1336.84Peroxisomal biogenesis factor 6 OS=Candida glabrat... [more]
KTNA1_DANRE2.067e-1335.65Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
PEX6_YEAST2.699e-1338.60Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisia... [more]
PEX6_PICAN2.699e-1339.66Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]
KTNA1_STRPU2.699e-1334.19Katanin p60 ATPase-containing subunit OS=Strongylo... [more]

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Properties
Property NameValue
Genbank descriptionC05803E12SK FerrChloL1 Citrus clementina cDNA clone C05803E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296856 ID=CX296856; Name=CX296856; organism=Citrus clementina; type=EST; length=651bp
AAAGAGAGCAGACTATTAATCAGCTTTTCACTGAAATGGATGGCTTTTCT
GGTAATTCTGGTGTTATTGTATTGGCTGCTACTAATAGGCCGGATGTTCT
TGATTCTGCTTTGTTGAGGCCTGGGAGATTTGACAGGCAGGTTACAGTGG
ATAGGCCTGATGTTGCTGGTAGGGTTAAAATTCTTCAGGTGCACTCCAGA
GGAAAGGCACTTGCTAAGGATGTGGACTTTGAAAAAATTTCTAGAAGAAC
ACCAGGTTTTACTGGAGCTGATCTGCAGAACCTGATGAATGAAGCAGCCA
TTCTTGCAGCCAGGCGTGACCTCAAGGAGATAAGCAAAGATGAGATATCC
GATGCTCTAGAGAGGATCATTGCTGGACCAGAGAAGAAAAATGCAGTTGT
CTCTGATGAGAAGAAGAAATTAGTAGCCTACCACGAGGCTGGCCATGCTT
TAGTTGGGGCTCTCATGCCTGAATATGATCCTGTAGCCAAGATTTCCATC
ATTCCTCGTGGCCAAGCTGGTGGGCTTACCTTTTTCGCTCCAAGTGAAGA
GAGGCTTGAGTCTGGACTTTACAGCAGGAGCTACCTGGAGAATCAGATGG
CTGTCGCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGGAA
A
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