CX296856
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13 Identity = 42/129 (32.56%), Postives = 69/129 (53.49%), Query Frame = 3 Query: 6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKN 392 ++ + +L +MDGF N V V+ ATNR D LD ALLRPGR DR++ PD + I + L+++VD E R +GAD+ ++ E+ +LA R + + + A + +I E+++ Sbjct: 286 QRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PEX6_GLOLA (Peroxisomal biogenesis factor 6 OS=Glomerella lagenarium GN=PEX6 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13 Identity = 57/187 (30.48%), Postives = 92/187 (49.20%), Query Frame = 3 Query: 6 EQTINQLFTEMDGFSG----NSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR-VKILQVHSRGKALAKDVDFEKISRRTP-GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAY---HEAGHALVGALMPEYD-PVAKISIIPRGQAGGLTFF 536 ++ ++QL E+DG SG + GV V+ ATNRPD+LD ALLRPGRFD+ + + D + +KIL+ +R L V ++++ P +TGAD L ++A + A R + + + A P + +S AY H A + ++ E D A ++P AG L+ + Sbjct: 1113 DRIVSQLLAELDGMSGGDDTSGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQLKILEALTRKFTLHPSVSLHSVAQQLPFTYTGADFYALCSDAMLKAVTRQAASVDA-----KIRELEAQPRSRTGPIS------TAYFFDHHATPEDIAVMVTEEDFLAANRELVPSVSAGELSHY 1288
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PEX6_DICDI (Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13 Identity = 50/157 (31.85%), Postives = 78/157 (49.68%), Query Frame = 3 Query: 6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVD-RPDVAGRVKILQVHSRGKALAKDVDFEKISRRTP-GFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMP 470 ++ ++QL E+DG +S V ++ ATNRPD+LDS+L+RPGR DR + + + + KILQ +R LA DVD K+ P TGAD L ++A A + EI++ ++ +KL+ Y V +L+P Sbjct: 1038 DRVVSQLLAELDGMQKSSDVFIIGATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENCPMNLTGADFYALASDAMSNAFHERITASINGEINE----------------EEQNQKLIVYQNHFIKAVNSLVP 1178
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13 Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 3 Query: 6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR----GKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR--DLKEISKDEI 347 + +NQL +DG + ++V+ TNR D++D ALLRPGR + V + PD GR +I ++H+ AL KDV+ + T ++GA+++ ++ AA A R D K I EI Sbjct: 352 DSVVNQLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQIFKIHTAKMRDQNALDKDVNLANYAHTTRNYSGAEIEGVVKSAASYAFSRQVDTKNIKNVEI 471
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: SPA5L_XENTR (Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus tropicalis GN=spata5l1 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13 Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = 3 Query: 9 QTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILA 308 + + QL T MDG ++ ++ +AAT+RPD +D AL RPGRFDR+V + P R IL++ +DVD ++ T G+ GADL L +AA+ A Sbjct: 313 RVVAQLLTLMDGIDSDNKMVTVAATSRPDAIDPALRRPGRFDREVIIGTPTHKQRQAILEMMISNMPTDRDVDAAALADVTVGYVGADLTALCRDAAMQA 412
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PEX6_CANGA (Peroxisomal biogenesis factor 6 OS=Candida glabrata GN=PEX6 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13 Identity = 42/114 (36.84%), Postives = 70/114 (61.40%), Query Frame = 3 Query: 6 EQTINQLFTEMDGFSGNS-GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGR-VKILQVHSRGKALAKDVDFEKISRRTP-GFTGADLQNLMNEAAILAARRDLKEISK 338 ++ ++QL E+DG S + GV ++ ATNRPD+LD ALLRPGRFD+ + + D + I++ +R ++ D++F+++ P +TGAD L ++A + A R KEI + Sbjct: 837 DRIVSQLLAELDGMSSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIYLGIADTREKQANIMRALTRKFKVSSDINFDELVSDFPFSYTGADFYALCSDAMLKAMTRISKEIDE 950
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13 Identity = 41/115 (35.65%), Postives = 72/115 (62.61%), Query Frame = 3 Query: 21 QLFTEMDGFSGNSG------VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 347 +L +MDG G S V+VLAATN P +D AL R R ++++ + P GRV +L+++ + LA DV+ +KI+ + G++GAD+ N+ +A+++A RR ++ ++ +EI Sbjct: 327 ELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDASLMAMRRRIEGLTPEEI 439
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PEX6_YEAST (Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisiae GN=PEX6 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13 Identity = 44/114 (38.60%), Postives = 70/114 (61.40%), Query Frame = 3 Query: 6 EQTINQLFTEMDGFSGNS-GVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV-AGRVKILQVHSRGKALAKDVDFEKISRRTP-GFTGADLQNLMNEAAILAARRDLKEISK 338 ++ ++QL E+DG S ++ GV V+ ATNRPD+LD ALLRPGRFD+ + + PD ++ IL+ +R L DV ++++ P +TGAD L ++A + A R + + K Sbjct: 851 DRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKLLYLGIPDTDTKQLNILEALTRKFVLDNDVKLIELAKLCPFNYTGADFYALCSDAMLNAMSRIARMVEK 964
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13 Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 3 Query: 6 EQTINQLFTEMDGFSG---NSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDV-AGRVKILQVHSRGKALAKDVDFEKISRRTP-GFTGADLQNLMNEAAILAARRDLKEISK 338 ++ ++QL E+DG SG GV V+ ATNRPD+LD ALLRPGRFD+ + + D + KI+Q +R L VD +I+ P +TGAD L ++A + A R + K Sbjct: 932 DRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEKQAKIIQALTRKFQLDPSVDLGRIAETCPFTYTGADFYALCSDAMLNAMTRTAGAVEK 1047
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13 Identity = 40/117 (34.19%), Postives = 74/117 (63.25%), Query Frame = 3 Query: 18 NQLFTEMDGFSGNSG-------VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 347 ++L +MDG SG S V+VLAATN P +D AL R R ++++ + P++ GR ++L+++ + LA D+D + I+ + G++GAD+ N+ +A+++A RR ++ + +EI Sbjct: 356 SELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDASMMAMRRRIQGLRPEEI 470 The following BLAST results are available for this feature:
BLAST of CX296856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 308
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296856 ID=CX296856; Name=CX296856; organism=Citrus clementina; type=EST; length=651bpback to top |