CX296856

Overview
NameCX296856
Unique NameCX296856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 42/123 (34.15%), Postives = 71/123 (57.72%), Query Frame = 3
Query:   18 NQLFTEMDGFSG---NSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR-DLKEISKDEISDALERIIA 374
            ++   +MDG      +  V VLAATN P  LD AL R  RF++++ +  PD+  R K+++    G   + +++++ ++ RT GF+GAD+ +L   AAI   RR D K +   E++ A+E + A
Sbjct:  315 SEFLVQMDGSQNKFDSRRVFVLAATNIPWELDEALRR--RFEKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAINVLRRYDTKSLRGGELTAAMESLKA 435          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 39/117 (33.33%), Postives = 68/117 (58.12%), Query Frame = 3
Query:   18 NQLFTEMDGFSG-------NSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 347
            ++L  +MDG  G       +  V+VLAATN P  +D AL R  R ++++ +  P   GR ++L++  R   L  D+  E I+ +  G++GAD+ N+  +A+++A RR +  +S +EI
Sbjct:  330 SELLVQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKISLREVELDPDIRLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEI 444          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.934e-11
Identity = 42/128 (32.81%), Postives = 73/128 (57.03%), Query Frame = 3
Query:   18 NQLFTEMDGFSGNSG--------VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR--------DLKEISKDEISD 353
            ++L  ++DG S  +         V+VLAATN P  +D AL R  R ++++ +  PD   R  ++ ++ R   +A DV+ E ++RRT G++G DL N+  +A++   RR        ++K +SKD+IS+
Sbjct:  361 SELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISN 486          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.934e-11
Identity = 38/117 (32.48%), Postives = 68/117 (58.12%), Query Frame = 3
Query:   18 NQLFTEMDGFSG-------NSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEI 347
            ++L  +MDG  G       +  V+VLAATN P  +D AL R  R ++++ +  P   GR ++L+++ R   L  D+  E I+ +  G++GAD+ N+  +A+++A RR +  +  +EI
Sbjct:  330 SELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLGPEEI 444          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.309e-11
Identity = 40/118 (33.90%), Postives = 65/118 (55.08%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVD-RPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDA 356
            ++ + +L T+MDGF  ++ V V+ ATNR D LD ALLRPGR DR++      D   R  I    +   +LA + D + +  R    +GA +  +M EA + A R++   I + ++ +A
Sbjct:  293 QRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPYLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEA 410          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.309e-11
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD 320
            ++ + +L  +MDGF     V V+ ATNR D LD ALLRPGR DR++    PD   +  + QV +    L+ +VD E    R    + A++  +  EA + A R++
Sbjct:  276 QRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN 380          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.628e-11
Identity = 37/105 (35.24%), Postives = 56/105 (53.33%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRD 320
            ++ + +L  +MDGF     V V+ ATNR D LD ALLRPGR DR++    PD   +  + QV +    L  +VD E    R    + A++  +  EA + A R++
Sbjct:  281 QRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKN 385          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 42/129 (32.56%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   54 NSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEA 440
            N  VI++ ATNRP  LDSA+LR  R   +  +++P+V  R  IL++    + +   V+  +I+++T GF+G+DL+ +  +AA+L  R  + + S +E      R I   + + A+   +K K    HEA
Sbjct:  232 NCQVIIMGATNRPQDLDSAILR--RMPTRFHINQPNVRQRKDILKLILENENVESAVELSEIAKQTDGFSGSDLREMCRDAALLCVRDFVHQESPEE---DFIRPIRQEDLQRAIEKMKKSKSAGVHEA 355          
The following BLAST results are available for this feature:
BLAST of CX296856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
MEI1_CAEEL1.481e-1134.15Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
KATL1_RABIT1.481e-1133.33Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KTNA1_ARATH1.934e-1132.81Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
KATL1_PAPAN1.934e-1132.48Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
PRS6B_YEAST4.309e-1133.9026S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS6B_ARATH4.309e-1135.2426S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS6B_SOLTU5.628e-1135.2426S protease regulatory subunit 6B homolog OS=Sola... [more]
ATD1B_DANRE9.601e-1132.56ATPase family AAA domain-containing protein 1-B OS... [more]

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Properties
Property NameValue
Genbank descriptionC05803E12SK FerrChloL1 Citrus clementina cDNA clone C05803E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296856 ID=CX296856; Name=CX296856; organism=Citrus clementina; type=EST; length=651bp
AAAGAGAGCAGACTATTAATCAGCTTTTCACTGAAATGGATGGCTTTTCT
GGTAATTCTGGTGTTATTGTATTGGCTGCTACTAATAGGCCGGATGTTCT
TGATTCTGCTTTGTTGAGGCCTGGGAGATTTGACAGGCAGGTTACAGTGG
ATAGGCCTGATGTTGCTGGTAGGGTTAAAATTCTTCAGGTGCACTCCAGA
GGAAAGGCACTTGCTAAGGATGTGGACTTTGAAAAAATTTCTAGAAGAAC
ACCAGGTTTTACTGGAGCTGATCTGCAGAACCTGATGAATGAAGCAGCCA
TTCTTGCAGCCAGGCGTGACCTCAAGGAGATAAGCAAAGATGAGATATCC
GATGCTCTAGAGAGGATCATTGCTGGACCAGAGAAGAAAAATGCAGTTGT
CTCTGATGAGAAGAAGAAATTAGTAGCCTACCACGAGGCTGGCCATGCTT
TAGTTGGGGCTCTCATGCCTGAATATGATCCTGTAGCCAAGATTTCCATC
ATTCCTCGTGGCCAAGCTGGTGGGCTTACCTTTTTCGCTCCAAGTGAAGA
GAGGCTTGAGTCTGGACTTTACAGCAGGAGCTACCTGGAGAATCAGATGG
CTGTCGCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGGAA
A
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