CX296856

Overview
NameCX296856
Unique NameCX296856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.598e-58
Identity = 115/213 (53.99%), Postives = 152/213 (71.36%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFG 644
            EQT+NQL  EMDGF+  +GV+V+AATNR DVLD ALLRPGRFDR + ++ PD+  R  ILQVH++ K L+  +    +++RTPGF+GA L+N++NEA +LA R +   I+ ++I +A++R+IAGP KK+ VVSD  +KLVAYHEAGHALVG  +   D V KI+IIPRGQAGG T   P    L   L  +S L   +A A+GGR AEE I+G
Sbjct:  348 EQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILQVHAKNKNLSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTINMNDIDEAIDRVIAGPAKKSRVVSDADRKLVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDL--NLKRKSDLLAMIATAMGGRAAEEEIYG 558          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.137e-58
Identity = 120/216 (55.56%), Postives = 151/216 (69.91%), Query Frame = 3
Query:    3 REQTINQLFTEMDGFSG-NSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGE 647
            REQT+NQL TEMDGF G + GV+V+AATNRP++LD+ALLRPGRFDR+V+V  PDV GR +IL VH   K L   V    ++ RTPGF+GADL NLMNEAAILA RR    I+  EI D+++RI+AG E   ++   + K LVAYHE GHA+   L   +D V K+++IPRGQA GLT+F P EE  +  L SR  +   +   LGGR AEEV+FGE
Sbjct:  340 REQTLNQLLTEMDGFGGGDGGVVVIAATNRPEILDAALLRPGRFDRRVSVGLPDVRGREEILLVHGANKRLDPGVSLAVVAMRTPGFSGADLANLMNEAAILAGRRGKDRITVSEIDDSIDRIVAGLE-GTSMTDGKSKMLVAYHEIGHAVCATLTAGHDEVQKVTLIPRGQARGLTWFLPGEE--DPALVSRQQIFAGIVGGLGGRAAEEVVFGE 552          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.015e-58
Identity = 108/216 (50.00%), Postives = 157/216 (72.69%), Query Frame = 3
Query:    3 REQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEE 650
            REQT+NQ+  EMDG + N+G++++ ATNR DVLD ALLRPGRFDR +TV  PD+  R +IL++HS+GK L+K++ F+KI++RTPG++GA L+N++NEA++L+ R     I   +I +A++R++AGP KK+ V+S E+ K VAYHEAGHA+VG  +   + V KI+IIPRG AGG     P EE+  +   S+  L   +A  +GGR AE +I+G+E
Sbjct:  331 REQTLNQILVEMDGINENAGILIMGATNRTDVLDPALLRPGRFDRIITVGLPDIKEREEILKLHSKGKRLSKEIKFDKIAKRTPGYSGAQLENVINEASLLSVREKTDVIISTQIDEAIDRVMAGPAKKSRVISQEELKAVAYHEAGHAVVGLKVKGGNKVQKITIIPRGNAGGYNLMTPEEEKYNA---SKKELLATIASYMGGRAAEMIIYGKE 543          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.015e-58
Identity = 114/213 (53.52%), Postives = 152/213 (71.36%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFG 644
            EQT+NQL  EMDGF+  +GV+V+AATNR DVLD ALLRPGRFDR + ++ PD+  R  IL+VH+  K L+  +    +++RTPGF+GA L+N++NEA +LA R +   I+ ++I +A++R+IAGP KK+ V+SDE +KLVAYHEAGHALVG  +   D V KI+IIPRGQAGG T   P    L   L  +S L   +A A+GGR AEE I+G
Sbjct:  351 EQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILKVHAENKNLSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTININDIDEAIDRVIAGPAKKSRVISDEDRKLVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDL--NLKRKSDLLAMIATAMGGRAAEEEIYG 561          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.015e-58
Identity = 110/216 (50.93%), Postives = 159/216 (73.61%), Query Frame = 3
Query:    3 REQTINQLFTEMDGFS--GNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFG 644
            REQT+NQL  EMDGF   GNS VIV+AATNR DVLD ALLRPGRFDR+V V  PDV GR  +L+VH++ K LA DVD   ++ +TPG+ GADL+N++NEAA++AAR++ KEI+  +I + ++R +AGP KK+ + S  ++++VAYHEAGHA+VG ++     V K++++PRG+ GG     P EE ++    +  +L++Q+A  +GGR+ EE++FG
Sbjct:  312 REQTLNQLLVEMDGFQDDGNS-VIVIAATNRSDVLDPALLRPGRFDRKVLVGAPDVKGREAVLKVHAKNKPLASDVDLHNVATQTPGYVGADLENVLNEAALVAARQNKKEINAADIDEGMDRAMAGPAKKDRIQSMREREIVAYHEAGHAIVGLVLENGSTVRKVTVVPRGRIGGYMLALPDEEIMQP---TNFHLQDQLASLMGGRLGEEIVFG 523          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: RCA1_SCHPO (Mitochondrial respiratory chain complexes assembly protein rca1 OS=Schizosaccharomyces pombe GN=SPBC543.09 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.351e-55
Identity = 108/218 (49.54%), Postives = 148/218 (67.89%), Query Frame = 3
Query:    3 REQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDF--EKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEE 650
            RE T+NQL  EMDGF+ +  ++V A TNRPDVLD ALLRPGRFDRQ+T+DRPD+ GR +I +VH +    A ++D   ++++  T GFTGAD+ N+ NE A++AAR +  E+       A+ER+ AG EKK+ V+S E+K  VA+HEAGHA+ G  M   DP+ K+SIIPR QA G   + P ++     L SR  + +QM +AL GRV+EE+ FG E
Sbjct:  416 RESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAARSNSNEVQMVHFEQAIERVTAGLEKKSRVLSPEEKNTVAHHEAGHAVAGWFMEYVDPLLKVSIIPRAQALGYASYLPKDQY----LMSRGQILDQMGMALAGRVSEEIFFGPE 629          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.413e-54
Identity = 114/217 (52.53%), Postives = 152/217 (70.05%), Query Frame = 3
Query:    3 REQTINQLFTEMDGF-SGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGE 647
            REQT+NQL  EMDGF S N+ VIVLAATNRP++LD AL+RPGRFDRQV VD+PD  GRV+IL+VH +G  LA DV+ +++++ T G  GADL N++NEAA+LA R + KE+ +  + +A+ER IAG EKK+  +S ++KK+VAYHE+GHA++  +      V K+SIIPRG A  G T   P E +    L  +  L  ++ V LGGR AEEV   E
Sbjct:  290 REQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSTRVNKVSIIPRGMAALGYTLNTPEENKY---LMQKHELIAEIDVLLGGRAAEEVFLEE 503          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.376e-54
Identity = 108/216 (50.00%), Postives = 151/216 (69.91%), Query Frame = 3
Query:    3 REQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRG-QAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGE 647
            REQT+NQL  EMDGF   +G+I+LAATNRPDVLD ALLRPGRFDRQV VDRPD+ GR  IL++H++   LA +VD + ++R T G++GADL N++NEAA+LA R    ++ + ++ +A+E+ + G +KK+ V+ +E+++++AYHE GHAL G      D V KI+IIPRG  A G TF  P ++R    + +   L  ++ V L GR AE V FGE
Sbjct:  259 REQTLNQLLVEMDGFDNTTGLILLAATNRPDVLDPALLRPGRFDRQVCVDRPDLKGREAILRIHAQNVKLAPEVDLKAVARITGGYSGADLANVVNEAALLAVRSGRAQVIETDLDEAVEKTMIGLQKKSRVIREEERRIIAYHETGHALAGTFTKGADKVHKITIIPRGTSALGYTFHIPEDDR---HIVTEQQLLAEVDVLLSGRAAEFVAFGE 471          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.376e-54
Identity = 115/217 (53.00%), Postives = 151/217 (69.59%), Query Frame = 3
Query:    3 REQTINQLFTEMDGF-SGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGE 647
            REQT+NQL  EMDGF S N+ VIVLAATNRP++LD ALLRPGRFDRQV VD+PD  GRV+IL+VH +   LA DVD ++I++ T G  GADL N++NEAA+LA R + KE+ +  + +A+ER IAG EKK+  +S ++KK+VAYHE+GHA++  +      V K+SIIPRG A  G T   P E +    L  +  L  ++ V LGGR AE+V   E
Sbjct:  296 REQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALLRPGRFDRQVLVDKPDFKGRVEILKVHIKPVKLANDVDLQEIAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKY---LMQKHELIAEIDVLLGGRAAEDVFLQE 509          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.021e-54
Identity = 106/218 (48.62%), Postives = 147/218 (67.43%), Query Frame = 3
Query:    3 REQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRR----TPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFG 644
            +E T+NQL  EMDGF+  + V++LA TNRPD+LD AL+RPGRFDRQ+ +  PD+ GR  I +VH R   L   ++ EK++R+    TPGF+GAD+ N+ NEAA++AAR     I++     A+ER+I G EKK  V+  E+KK VAYHEAGHA+ G  +   DP+ K+SIIPRG+  G   + P E+     LY+R  L ++M + LGGRV+EE+ FG
Sbjct:  428 QENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPREQY----LYTREQLLDRMCMTLGGRVSEEIFFG 641          
The following BLAST results are available for this feature:
BLAST of CX296856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
FTSH_MYCPN3.598e-5853.99Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH6_ORYSJ6.137e-5855.56Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH_MYCPU8.015e-5850.00Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_MYCGE8.015e-5853.52Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_LACLA8.015e-5850.93Cell division protease ftsH homolog OS=Lactococcus... [more]
RCA1_SCHPO6.351e-5549.54Mitochondrial respiratory chain complexes assembly... [more]
FTSH_HELPJ2.413e-5452.53Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_TREPA5.376e-5450.00Cell division protease ftsH homolog OS=Treponema p... [more]
FTSH_HELFE5.376e-5453.00Cell division protease ftsH homolog OS=Helicobacte... [more]
AFG32_BOVIN7.021e-5448.62AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC05803E12SK FerrChloL1 Citrus clementina cDNA clone C05803E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296856 ID=CX296856; Name=CX296856; organism=Citrus clementina; type=EST; length=651bp
AAAGAGAGCAGACTATTAATCAGCTTTTCACTGAAATGGATGGCTTTTCT
GGTAATTCTGGTGTTATTGTATTGGCTGCTACTAATAGGCCGGATGTTCT
TGATTCTGCTTTGTTGAGGCCTGGGAGATTTGACAGGCAGGTTACAGTGG
ATAGGCCTGATGTTGCTGGTAGGGTTAAAATTCTTCAGGTGCACTCCAGA
GGAAAGGCACTTGCTAAGGATGTGGACTTTGAAAAAATTTCTAGAAGAAC
ACCAGGTTTTACTGGAGCTGATCTGCAGAACCTGATGAATGAAGCAGCCA
TTCTTGCAGCCAGGCGTGACCTCAAGGAGATAAGCAAAGATGAGATATCC
GATGCTCTAGAGAGGATCATTGCTGGACCAGAGAAGAAAAATGCAGTTGT
CTCTGATGAGAAGAAGAAATTAGTAGCCTACCACGAGGCTGGCCATGCTT
TAGTTGGGGCTCTCATGCCTGAATATGATCCTGTAGCCAAGATTTCCATC
ATTCCTCGTGGCCAAGCTGGTGGGCTTACCTTTTTCGCTCCAAGTGAAGA
GAGGCTTGAGTCTGGACTTTACAGCAGGAGCTACCTGGAGAATCAGATGG
CTGTCGCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGGAA
A
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