CX296856

Overview
NameCX296856
Unique NameCX296856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.239e-50
Identity = 99/218 (45.41%), Postives = 147/218 (67.43%), Query Frame = 3
Query:    3 REQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDF--EKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGE 647
            RE T+NQL  EMDGF   SGV+VLA TNRPD+LD ALLRPGRFDRQ+++D+PD+ GR +I +++ +   L K+  F  ++++  TPGF GAD+ N+ NEAA++AAR +   I+      A++R+I G EKKN V+S  +++ VAYHE+GHA+ G  +   +P+ K++I+PRG A  G   + P++      L ++  L +   + LGGR AEEV+ G+
Sbjct:  440 RESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQISIDKPDIKGRDQIFRIYLKKLKLDKEPSFYSQRLAALTPGFAGADIANVCNEAALIAARSEGTLITMQHFESAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNDNL----LMTKEQLFDMTCMTLGGRAAEEVLIGK 653          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.710e-50
Identity = 97/218 (44.50%), Postives = 147/218 (67.43%), Query Frame = 3
Query:    3 REQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDF--EKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGE 647
            RE T+NQL  EMDGF   +GV+VLA TNRPD+LD ALLRPGRFDRQ+T+D+PD+ GR +I +++ +   L  +  +  ++++  TPGF GAD+ N+ NEAA++AAR +   ++      A++R+I G EKKN V+S  +++ VAYHE+GHA+VG  +   +P+ K++I+PRG A  G   + P+E      L ++  L +   + LGGR AE+V+ G+
Sbjct:  441 RESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHFESAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVVGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL----LMTKEQLFDMTCMTLGGRAAEQVLIGK 654          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.151e-50
Identity = 97/217 (44.70%), Postives = 145/217 (66.82%), Query Frame = 3
Query:    3 REQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDF--EKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFG 644
            RE T+NQL  EMDGF   +GV+VLA TNRPD+LD ALLRPGRFDRQ+T+D+PD+ GR +I Q++ +   L  +  +  ++++  TPGF GAD+ N+ NEAA++AAR +   ++      A++R+I G EKKN V+S  +++ VAYHE+GHA+ G  +   +P+ K++I+PRG A  G   + P+E      L ++  L +   + LGGR AE+V+ G
Sbjct:  447 RESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHFDSAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL----LMTKEQLFDMTCMTLGGRAAEQVLIG 659          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.370e-49
Identity = 103/214 (48.13%), Postives = 140/214 (65.42%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGE 647
            + T+NQL  E+DGF  N G+IV+AATN P+ LD AL+RPGRFDR + V  PDV GR +IL+ H      + DVD   I+R TPGF+GADL NL+N AA+ AA    K ++ +++  A +RI+ G E+K+AV+SDE +KL AYHE GHALV        PV K +I+PRG A G+    P ++       SR  +  ++ V +GGRVAEE+IFG+
Sbjct:  347 KMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEYAKDRIMMGSERKSAVISDESRKLTAYHEGGHALVAIHTEGAHPVHKATIVPRGMALGMVAQLPDKDETS---VSRKQMLARLDVCMGGRVAEELIFGD 557          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.790e-49
Identity = 103/214 (48.13%), Postives = 141/214 (65.89%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGE 647
            + T+NQ+  E+DGF  N G+IV+AATN P+ LD AL+RPGRFDR + V  PDV GR +IL+ H      A+DVD   I+R TPGF+GADL NL+N AA+ AA    K+++  ++  A +RI+ G E+K+AV+SDE +KL A+HE GHALV        PV K +I+PRG A G+    P ++       SR  +  ++ V +GGRVAEE+IFGE
Sbjct:  344 KMTLNQMLVELDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGSKDVTMSDLEFAKDRIMMGSERKSAVISDESRKLTAFHEGGHALVAIHTEGALPVHKATIVPRGMALGMVSQLPDKDETS---ISRKQMLARLDVCMGGRVAEELIFGE 554          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 6.801e-49
Identity = 102/216 (47.22%), Postives = 147/216 (68.06%), Query Frame = 3
Query:    3 REQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDV-DFE-KISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQ-AGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIF 641
            RE T+NQ+  EMDGF+    V+VLA TNRPD+LD ALLRPGRFDR + +D+P++ GR  I  VH     LA ++ D + +++  TPGF+GAD+ N+ NEAA++AAR D   +  +    A+ER+I G E+K+ ++S E+KK+VAYHEAGHA+ G  +   DP+ K+SIIPRGQ A G   + P     +  L +   L+++M ++LGGRV+EE+ F
Sbjct:  468 RENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNHFEQAIERVIGGVERKSKLLSPEEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQYLPG----DIFLLTEQQLKDRMTMSLGGRVSEELHF 679          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.801e-49
Identity = 109/220 (49.55%), Postives = 145/220 (65.91%), Query Frame = 3
Query:    3 REQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR----GKALAKDVD--FEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQ-AGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIF 641
            RE T+NQL  EMDGF+ +  V+VLA TNRPDVLD+AL+RPGRFDR + +D PDV GR +I  VH +       L  D++    K++  TPGFTGAD+ N  NEAA++AAR +   I+      A+ER+IAG EKK  V+S E+K+ VAYHEAGHA+ G  +   DP+ K+SIIPRGQ A G   + P ++     L S     ++M +ALGGRV+EE+ F
Sbjct:  409 REATLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSPDVNGRQQIYLVHLKRLNLDPLLTDDMNNLSGKLATLTPGFTGADIANACNEAALIAARHNDPYITIHHFEQAIERVIAGLEKKTRVLSKEEKRSVAYHEAGHAVCGWFLKYADPLLKVSIIPRGQGALGYAQYLPPDQY----LISEEQFRHRMIMALGGRVSEELHF 624          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.584e-48
Identity = 104/230 (45.22%), Postives = 144/230 (62.61%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKK---------------LVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEE 650
            ++T++QL  EMDGF  N G+IV+AATN PD+LD AL RPGRFDR + V  PDV GR +IL+++ + K ++ DVD   I+R TPGF GADL NL+N AAI AA     +++  ++  A +RII G E+K+  +SDE KK               L AYHE+GHA+V        P+ K +I+PRG A G+    PS++       S+  L  ++ V +GGRVAEE+IFGE+
Sbjct:  444 KKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPVSSDVDVNAIARSTPGFNGADLANLVNIAAIKAAVEGADKLAAAQLEFAKDRIIMGTERKSMFISDESKKACLFKLLYFILRELILTAYHESGHAIVALNTQGAHPIHKATILPRGSALGMVTQLPSQDETS---ISKKQLLARLDVCMGGRVAEELIFGED 670          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.375e-48
Identity = 114/220 (51.82%), Postives = 141/220 (64.09%), Query Frame = 3
Query:    3 REQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK--ALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGA----LMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIF 641
            REQT+NQL TEMDGF  NS VIVL ATNR DVLD AL RPGRFDR VTV+ PD  GR  IL+VH   K   L  DV+   I+  T GFTGADL NL+NEAA+LA R++   + K +   A+ER IAG EKK+A +   +K +VA HEAGHA+VG     L+     V K+SI+PR G A G T+  P+ E  +  L     L  ++   LGGR AEEV++
Sbjct:  445 REQTLNQLLTEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGFTGADLANLVNEAALLAGRKNKTNVEKIDFIQAVERSIAGIEKKSARLKGNEKAVVARHEAGHAVVGTAVANLLTGQPRVEKLSILPRTGGALGFTYIPPTSE--DRYLLFIDELLGRLVTLLGGRAAEEVVY 662          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.375e-48
Identity = 101/212 (47.64%), Postives = 138/212 (65.09%), Query Frame = 3
Query:   12 TINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGE 647
            T+NQL  E+DGF  N G+IV+AATN P  LD AL+RPGRFDR + V  PDV GR +IL+ H      + DVD   I+R TPGF+GADL NL+N AA+ AA    K ++ +++  A +RI+ G E+K+AV+SDE +KL AYHE GHALV        PV K +I+PRG+  G+    P ++      +SR  +   + V++ GRVAEE+IFG+
Sbjct:  342 TLNQLLVELDGFKQNEGIIVIAATNFPQSLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMLKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEYAKDRIMMGSERKSAVISDESRKLTAYHEGGHALVAIHTEGARPVHKATIVPRGRTLGMVSQLPEKDETS---FSRKQMLAWLDVSMAGRVAEELIFGD 550          
The following BLAST results are available for this feature:
BLAST of CX296856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
FTSH3_ORYSJ1.239e-5045.41Cell division protease ftsH homolog 3, mitochondri... [more]
FTSH3_ARATH4.710e-5044.50Cell division protease ftsH homolog 3, mitochondri... [more]
FTSHA_ARATH6.151e-5044.70Cell division protease ftsH homolog 10, mitochondr... [more]
FTSH5_ORYSJ1.370e-4948.13Cell division protease ftsH homolog 5, mitochondri... [more]
FTSH4_ARATH1.790e-4948.13Cell division protease ftsH homolog 4, mitochondri... [more]
RCA1_YEAST6.801e-4947.22Mitochondrial respiratory chain complexes assembly... [more]
AFG3_YEAST6.801e-4949.55Mitochondrial respiratory chain complexes assembly... [more]
FTSH9_ORYSJ2.584e-4845.22Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH7_ARATH3.375e-4851.82Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH4_ORYSJ3.375e-4847.64Cell division protease ftsH homolog 4, mitochondri... [more]

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Properties
Property NameValue
Genbank descriptionC05803E12SK FerrChloL1 Citrus clementina cDNA clone C05803E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296856 ID=CX296856; Name=CX296856; organism=Citrus clementina; type=EST; length=651bp
AAAGAGAGCAGACTATTAATCAGCTTTTCACTGAAATGGATGGCTTTTCT
GGTAATTCTGGTGTTATTGTATTGGCTGCTACTAATAGGCCGGATGTTCT
TGATTCTGCTTTGTTGAGGCCTGGGAGATTTGACAGGCAGGTTACAGTGG
ATAGGCCTGATGTTGCTGGTAGGGTTAAAATTCTTCAGGTGCACTCCAGA
GGAAAGGCACTTGCTAAGGATGTGGACTTTGAAAAAATTTCTAGAAGAAC
ACCAGGTTTTACTGGAGCTGATCTGCAGAACCTGATGAATGAAGCAGCCA
TTCTTGCAGCCAGGCGTGACCTCAAGGAGATAAGCAAAGATGAGATATCC
GATGCTCTAGAGAGGATCATTGCTGGACCAGAGAAGAAAAATGCAGTTGT
CTCTGATGAGAAGAAGAAATTAGTAGCCTACCACGAGGCTGGCCATGCTT
TAGTTGGGGCTCTCATGCCTGAATATGATCCTGTAGCCAAGATTTCCATC
ATTCCTCGTGGCCAAGCTGGTGGGCTTACCTTTTTCGCTCCAAGTGAAGA
GAGGCTTGAGTCTGGACTTTACAGCAGGAGCTACCTGGAGAATCAGATGG
CTGTCGCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGGAA
A
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