CX296856

Overview
NameCX296856
Unique NameCX296856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.757e-48
Identity = 113/220 (51.36%), Postives = 140/220 (63.64%), Query Frame = 3
Query:    3 REQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK--ALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVG----ALMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIF 641
            REQT+NQL TEMDGF  +S VIVL ATNR DVLD AL RPGRFDR VTV+ PD  GR  IL+VH   K   L  DV+   I+  T GFTGADL NL+NEAA+LA R+    + K +   A+ER IAG EKK A +   +K +VA HEAGHA+VG    +L+     V K+SI+PR G A G T+  P+ E  +  L     L  ++   LGGR AEEV++
Sbjct:  449 REQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGFTGADLANLVNEAALLAGRKSKMTVDKIDFIHAVERSIAGIEKKTARLKGSEKAVVARHEAGHAVVGTAVASLLSGQSRVEKLSILPRSGGALGFTYIPPTHE--DRYLLFIDELHGRLVTLLGGRAAEEVVY 666          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.519e-48
Identity = 115/219 (52.51%), Postives = 140/219 (63.93%), Query Frame = 3
Query:    3 REQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGK--ALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGA----LMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVI 638
            REQT+NQL TEMDGF  NS VIVL ATNR DVLD AL RPGRFDR V V+ PD  GR  IL+VH   K   L KDVD   I+  T GFTGADL NL+NEAA+LA R + + + K +   A+ER IAG EKK+A +   +K +VA HE GHA+VG     L+P    V K+SI+PR G A G T+  P+ E  +  L     L  ++   LGGR AEEV+
Sbjct:  466 REQTLNQLLTEMDGFDTNSAVIVLGATNRADVLDPALRRPGRFDRVVMVEAPDRFGRESILKVHVSRKELPLGKDVDLSDIAAMTTGFTGADLANLVNEAALLAGRSNKEIVEKIDFICAVERSIAGIEKKHAKLKGNEKAVVARHEVGHAVVGTAVANLLPGQPRVEKLSILPRSGGALGFTYTPPTTE--DRYLLFVDELRGRLVTLLGGRAAEEVV 682          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.188e-47
Identity = 98/214 (45.79%), Postives = 140/214 (65.42%), Query Frame = 3
Query:    9 QTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEE 650
            QTINQL  EMDGF    G+IVL ATN+ +VLD ALLRPGRFD Q+ V  P   GR+ +L ++ +      ++D EK++  T G+TGAD+QNL+N+AAI AA R+   +    + DA +R+I GP K+   + D+  ++ A+HEAGHALV  L  +  P+ K++IIPRG+AGGLT F    +  +    +R+ L  Q+ V +GGRV EE++FG +
Sbjct:  285 QTINQLLAEMDGFQSKEGIIVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLKKVKTGSNIDIEKLAHGTVGYTGADIQNLVNQAAIAAALRNDPFVEMHHLWDARDRLIMGPAKRRP-LDDQTNRVSAFHEAGHALVALLTADSIPLHKVTIIPRGEAGGLTSFL---QEKDISFMTRAQLLAQLDVLMGGRVGEELVFGAD 494          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.313e-47
Identity = 97/214 (45.33%), Postives = 141/214 (65.89%), Query Frame = 3
Query:    9 QTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEE 650
            QTINQL  EMDGF  N GVI++ ATN P+ LD+AL+RPGRFD QVTV RPDV GR +IL+ +       K VD E I+R T GF+GA+L+NL+N+AA+ AA    + ++  E+  + ++I+ GPE+++  + ++ K + AYHE+GHA++     +  P+ K +I+PRG   G     P  +R      +R+ L  QM V++GGRVAEE+IFG +
Sbjct:  400 QTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNE---TRAQLLAQMDVSMGGRVAEELIFGTD 610          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.419e-46
Identity = 96/214 (44.86%), Postives = 141/214 (65.89%), Query Frame = 3
Query:    9 QTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEE 650
            QTINQL  EMDGF  N GVI++ ATN P+ LD+AL+RPGRFD QVTV RPDV GR +IL+ +       + VD E I+R T GF+GA+L+NL+N+AA+ AA    + ++  E+  + ++I+ GPE+++  + ++ K + AYHE+GHA++     +  P+ K +I+PRG   G     P  +R      +R+ L  QM V++GGRVAEE+IFG +
Sbjct:  458 QTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNE---TRAQLLAQMDVSMGGRVAEELIFGTD 668          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.568e-45
Identity = 90/215 (41.86%), Postives = 142/215 (66.05%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEE 650
            +QT+NQL  E+DGFS  SG+I++ ATN P+ LD AL RPGRFD+ V VD PDV GR  IL+ H +   LA +VD   I+R TPG +GA+L NL+N+AA+ A +++   +       A ++I+ G E+K  V++D  +K  A+HEAGHA++        P+ K +I+PRG+A G+TF  P  ++++    ++   + ++ V +GG++AEE+I+G++
Sbjct:  398 KQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQKNAVSVDMSHFEWAKDKILMGAERKTMVLTDAARKATAFHEAGHAIMAKYTNGATPLYKATILPRGRALGITFQLPEMDKVD---ITKRECQARLDVCMGGKIAEELIYGKD 609          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.048e-45
Identity = 96/214 (44.86%), Postives = 139/214 (64.95%), Query Frame = 3
Query:    9 QTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEE 650
            QTI QL  EMDGF  N GVI++ ATN P+ LD+AL+RPGRFD QVTV RPDV GR +IL+ +       K VD E I+R T GF+GA+L+NL+N+AA+ AA    + ++  E+  + ++I+ GPE+++  + ++ K + AYHE+GHA++     +  P+ K +I+PRG   G     P  +R       R+ L  QM V++GGRVAEE+IFG +
Sbjct:  400 QTIIQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNE---IRAQLLAQMDVSMGGRVAEELIFGTD 610          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.264e-44
Identity = 93/215 (43.26%), Postives = 143/215 (66.51%), Query Frame = 3
Query:    9 QTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEK-KKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEE 650
            QTINQL +EMDGF+ N G+IV+AATNR D LD ALLRPGRFD +VTV +PD+AGRV I   +      +  +D + +++ + GFTGAD++N++N+AA+ AA  +  E++   + +A +R++ GP +    + DE+  +  AYHEAGH LV     +  P+ K++IIPRGQ+ G T   P ++  +    +++ +   + V +GGRVAEE+IFG++
Sbjct:  320 QTINQLLSEMDGFTRNEGIIVIAATNRVDDLDKALLRPGRFDVRVTVPKPDLAGRVDIFNFYLSKIVHSGGIDPKVLAKGSTGFTGADIENMVNQAALKAATDNAVEVTMAYLDEARDRVLMGPARTGGRIPDEEANRNTAYHEAGHTLVSLYTKDATPLHKVTIIPRGQSLGHTAMLPEKDSYQ---LTKAQMLATLDVMMGGRVAEELIFGDD 531          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.576e-43
Identity = 95/215 (44.19%), Postives = 137/215 (63.72%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDF--EKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIF 641
            EQT+NQL  EMDG      VIVLA+TNR DVLD+AL+RPGR DR V +D P +  R +I + H +G  L +   F  ++++  TPGF+GAD+ N+ NEAA+ AAR     +       A+ER+IAG  KK+ ++S E++++VA+HE+GHALVG L+   + V K+SI PR  A  G +   P ++     L+++  L  +M +ALGGR AE + F
Sbjct:  430 EQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTFNFEYAVERVIAGTAKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQY----LFTKEQLFERMCMALGGRAAEAISF 640          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.165e-42
Identity = 92/217 (42.40%), Postives = 135/217 (62.21%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDF--EKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGE 647
            EQT+NQL  EMDG      VIVLA+TNR D+LD AL+RPGR DR V +D P +  R +I + H +   L +   F  ++++  TPGF+GAD+ N+ NEAA+ AAR     +       A+ER++AG  KK+ ++S E++K+VA+HE+GHALVG ++   + V K+SI PR  A  G     P ++     L+++  L  +M +ALGGR +E + F E
Sbjct:  430 EQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSKILSKEEQKVVAFHESGHALVGWMLEHTEAVMKVSITPRTNAALGFAQMLPRDQH----LFTKEQLFERMCMALGGRASEALSFNE 642          
The following BLAST results are available for this feature:
BLAST of CX296856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
FTSH9_ARATH5.757e-4851.36Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH7_ORYSJ7.519e-4852.51Cell division protease ftsH homolog 7, chloroplast... [more]
YME1_SCHMA2.188e-4745.79Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
YMEL1_MOUSE8.313e-4745.33ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
YMEL1_HUMAN2.419e-4644.86ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
YME1_YEAST1.568e-4541.86Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
YMEL1_RAT2.048e-4544.86ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
YME1_CAEEL2.264e-4443.26Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]
SPG7_MOUSE5.576e-4344.19Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
SPG7_HUMAN6.165e-4242.40Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC05803E12SK FerrChloL1 Citrus clementina cDNA clone C05803E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296856 ID=CX296856; Name=CX296856; organism=Citrus clementina; type=EST; length=651bp
AAAGAGAGCAGACTATTAATCAGCTTTTCACTGAAATGGATGGCTTTTCT
GGTAATTCTGGTGTTATTGTATTGGCTGCTACTAATAGGCCGGATGTTCT
TGATTCTGCTTTGTTGAGGCCTGGGAGATTTGACAGGCAGGTTACAGTGG
ATAGGCCTGATGTTGCTGGTAGGGTTAAAATTCTTCAGGTGCACTCCAGA
GGAAAGGCACTTGCTAAGGATGTGGACTTTGAAAAAATTTCTAGAAGAAC
ACCAGGTTTTACTGGAGCTGATCTGCAGAACCTGATGAATGAAGCAGCCA
TTCTTGCAGCCAGGCGTGACCTCAAGGAGATAAGCAAAGATGAGATATCC
GATGCTCTAGAGAGGATCATTGCTGGACCAGAGAAGAAAAATGCAGTTGT
CTCTGATGAGAAGAAGAAATTAGTAGCCTACCACGAGGCTGGCCATGCTT
TAGTTGGGGCTCTCATGCCTGAATATGATCCTGTAGCCAAGATTTCCATC
ATTCCTCGTGGCCAAGCTGGTGGGCTTACCTTTTTCGCTCCAAGTGAAGA
GAGGCTTGAGTCTGGACTTTACAGCAGGAGCTACCTGGAGAATCAGATGG
CTGTCGCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGGAA
A
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