CX296856

Overview
NameCX296856
Unique NameCX296856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.060e-41
Identity = 91/218 (41.74%), Postives = 132/218 (60.55%), Query Frame = 3
Query:    9 QTINQLFTEMDGFSGNSG----VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEE 650
            QT+NQL  ++DGFS N      V+ + ATN P+ LD AL RPGRFDR + V  PDV GR+ IL  H+R   L KDVD   I+R T GF GADL NL+N+AA+ A++     +S  ++  + +RI+ G E+K+A ++ E K + AYHE GHALV           K +I+PRG + G+T   P    ++   ++R      + V +GGR AEE+++G++
Sbjct:  385 QTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAAVYASKNLSTAVSMRDLEWSKDRILMGAERKSAFITPENKLMTAYHEGGHALVALFTKNAMRPYKATIMPRGSSLGMTISLPD---MDKDSWTREEYLAMLDVTMGGRAAEELLYGKD 599          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.383e-40
Identity = 91/216 (42.13%), Postives = 133/216 (61.57%), Query Frame = 3
Query:   30 TEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALER-IIAG---------PEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGE 647
            T +D FS    VI + ATNRPD LD   +R GR DR++ +  PD   RV+I  VHS GK LA+D+DF K+  RT GF+GAD++NL+NEAAI++ R+    I + +I D L++ ++ G          +K    VS EKK+L+A HEAGH ++  L P +D  A   ++P G+   ++ F P E+ ++ G  +  Y++ QM VA GGR AE V+FG+
Sbjct:  625 TGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLAEDIDFGKLVFRTVGFSGADIRNLVNEAAIMSVRKGRSYIYQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSYEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAVSVFYPREDMVDQGYTTFGYMKMQMVVAHGGRCAERVVFGD 840          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.583e-29
Identity = 79/215 (36.74%), Postives = 115/215 (53.49%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDF--EKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIF 641
            EQT+NQL  EMDG      VIVLA+TNR DVLD+AL+RPGR DR V +D P +  R +I + H +G  L +   F  ++++  TPGF+G                                       KK+ ++S E++++VA+HE+GHALVG L+   + V K+SI PR  A  G +   P ++     L+++  L  +M +ALGGR AE + F
Sbjct:  430 EQTLNQLLVEMDGMGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGT-------------------------------------AKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQY----LFTKEQLFERMCMALGGRAAEAISF 603          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.290e-27
Identity = 57/134 (42.54%), Postives = 88/134 (65.67%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSD 407
            ++T+ QL  EMDGF     + ++AATNRPDVLD A+LRPGRFDR V V  P +  R KIL++H     LA+D+DF+K+++ T G +GADL+ +  EA + A RRD + +  +E  +A+E++    + +  + S+
Sbjct:  280 QRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCEKMTLAEDIDFKKLAKATEGMSGADLKAIATEAGMFAVRRDKELVEMEEFLEAVEKVSMAADTQKMMPSN 413          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.194e-26
Identity = 60/143 (41.96%), Postives = 93/143 (65.03%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYH 434
            ++T+ QL  EMDGF     + V+AATNR D+LD ALLRPGRFDR + +  PD  GR +I ++H+R   LA+DVD +K+++ T G +GAD++ +  EA ++A R D   ++ D+   A++R++   E++    S E K+  AYH
Sbjct:  300 QRTLTQLLAEMDGFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLAKITEGASGADIKAICTEAGMMAIREDRDIVTMDDFLKAVDRVMGKKEEE----SGEFKR--AYH 436          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.090e-26
Identity = 59/128 (46.09%), Postives = 89/128 (69.53%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKK 389
            ++T+ QL  E+DGF     V ++AATNRPD+LD ALLRPGRFDR + V  P+  GR +IL++H+ G ALA++VD E ++R T G +GADL+ +  EA + A R +  E++  +  DA+++I+ G EK+
Sbjct:  272 QRTLMQLLAELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGMFAIRDERDEVTMADFMDAVDKIM-GVEKE 398          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.074e-25
Identity = 54/121 (44.63%), Postives = 81/121 (66.94%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERI 368
            ++T+ QL  EMDGF     + ++AATNRPDVLD A+LRPGRFDR V V  P +  R KIL++H     LA D+DF+K+++ T G +GADL+ +  EA + A R+D   +  ++  +A+E++
Sbjct:  280 QRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKDKALVEMEDFLEAVEKV 400          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.848e-25
Identity = 67/191 (35.08%), Postives = 110/191 (57.59%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLK-----EISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLES 563
            ++ +NQL TE+DG      V+V+AATNRPD++D ALLRPGR DR + V  PD   R+ I ++H+R   LA+DV+ E+++++T G+TGAD++ L  EAA+LA R  +      E+   E+ + L+  I+G  +  AV  +   K     E+  A  G      + + KI          ++  +P++E++E+
Sbjct:  571 DKVVNQLLTELDGMEEPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTEGYTGADIEALCREAAMLAVRESIGKPWDIEVKLRELINYLQS-ISGTFRAAAVELNSVIKATKERESAEA--GEFSELKNAIGKI----------ISVLSPAKEKIEA 748          

HSP 2 Score: 107.457 bits (267), Expect = 6.410e-23
Identity = 55/106 (51.89%), Postives = 70/106 (66.04%), Query Frame = 3
Query:   15 INQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEI 332
            + QL T MDG  G   V+V+ ATNRP+ LD AL RPGRFDR++ +  PD  GR +ILQ+H+R   LA+DVD + ++  T GF GADL  L  EAA+ A RR L  I
Sbjct:  300 VAQLLTLMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDYLADVTHGFVGADLAALCKEAAMRALRRVLPSI 405          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.848e-25
Identity = 60/142 (42.25%), Postives = 89/142 (62.68%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAY 431
            ++T+ QL  EMDGF     V ++ ATNRPD+LD A+LRPGRFDR + V  PD  GR++IL++H+R   LA+DV+ E+I++ T G  GA+L+ +  EA + A R     ++ D+   A+E+I+   EKK   V +     V Y
Sbjct:  291 QRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM---EKKKVKVKEPAHLDVLY 429          
BLAST of CX296856 vs. ExPASy Swiss-Prot
Match: VAT_THEAC (VCP-like ATPase OS=Thermoplasma acidophilum GN=vat PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.944e-25
Identity = 57/123 (46.34%), Postives = 80/123 (65.04%), Query Frame = 3
Query:    6 EQTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKISRRTPGFTGADLQNLMNEAAILAARR--DLKEISKDEISDALERI 368
            E+ +NQL T +DG    +GV+V+ ATNRPD++D ALLR GRFD+ + +  PD   R+ IL+VH++   LA DVD   I++RT G+ GADL+NL  EA + A R   D   +S+    DAL+ I
Sbjct:  586 ERIVNQLLTSLDGIEVMNGVVVIGATNRPDIMDPALLRAGRFDKLIYIPPPDKEARLSILKVHTKNMPLAPDVDLNDIAQRTEGYVGADLENLCREAGMNAYRENPDATSVSQKNFLDALKTI 708          

HSP 2 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 60/146 (41.10%), Postives = 85/146 (58.22%), Query Frame = 3
Query:    9 QTINQLFTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALA-----KDVDFEKISRRTPGFTGADLQNLMNEAAILAARRDLKEISKDE--ISDALER-IIAGPEKKNAVVSDEKKKL 422
            + + QL T MDG      VIV+ ATNR D +D AL RPGRFDR++ +  PD  GR +IL +H+R   L      K+   E+++  T GF GADL  L+ E+A+ A RR L EI  D+   ++ LE+ ++   + KNA+ S E   L
Sbjct:  309 RVVAQLLTLMDGMKERGHVIVIGATNRIDAIDPALRRPGRFDREIEIGVPDRNGRKEILMIHTRNMPLGMSEEEKNKFLEEMADYTYGFVGADLAALVRESAMNALRRYLPEIDLDKPIPTEILEKMVVTEDDFKNALKSIEPSSL 454          
The following BLAST results are available for this feature:
BLAST of CX296856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
YME1_SCHPO3.060e-4141.74Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
FTSHC_ARATH3.383e-4042.13Cell division protease ftsH homolog 12, chloroplas... [more]
SPG7_RAT4.583e-2936.74Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
PSMR_METMA4.290e-2742.54Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METKA6.194e-2641.96Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PSMR_METTH8.090e-2646.09Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_METAC3.074e-2544.63Proteasome-activating nucleotidase OS=Methanosarci... [more]
Y1156_METJA6.848e-2535.08Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
PSMR_METJA6.848e-2542.25Proteasome-activating nucleotidase OS=Methanocaldo... [more]
VAT_THEAC8.944e-2546.34VCP-like ATPase OS=Thermoplasma acidophilum GN=vat... [more]

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Properties
Property NameValue
Genbank descriptionC05803E12SK FerrChloL1 Citrus clementina cDNA clone C05803E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296856 ID=CX296856; Name=CX296856; organism=Citrus clementina; type=EST; length=651bp
AAAGAGAGCAGACTATTAATCAGCTTTTCACTGAAATGGATGGCTTTTCT
GGTAATTCTGGTGTTATTGTATTGGCTGCTACTAATAGGCCGGATGTTCT
TGATTCTGCTTTGTTGAGGCCTGGGAGATTTGACAGGCAGGTTACAGTGG
ATAGGCCTGATGTTGCTGGTAGGGTTAAAATTCTTCAGGTGCACTCCAGA
GGAAAGGCACTTGCTAAGGATGTGGACTTTGAAAAAATTTCTAGAAGAAC
ACCAGGTTTTACTGGAGCTGATCTGCAGAACCTGATGAATGAAGCAGCCA
TTCTTGCAGCCAGGCGTGACCTCAAGGAGATAAGCAAAGATGAGATATCC
GATGCTCTAGAGAGGATCATTGCTGGACCAGAGAAGAAAAATGCAGTTGT
CTCTGATGAGAAGAAGAAATTAGTAGCCTACCACGAGGCTGGCCATGCTT
TAGTTGGGGCTCTCATGCCTGAATATGATCCTGTAGCCAAGATTTCCATC
ATTCCTCGTGGCCAAGCTGGTGGGCTTACCTTTTTCGCTCCAAGTGAAGA
GAGGCTTGAGTCTGGACTTTACAGCAGGAGCTACCTGGAGAATCAGATGG
CTGTCGCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGGAA
A
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