CX296857

Overview
NameCX296857
Unique NameCX296857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3319 contig Ccv1_Contig3319:281..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: ORNT1_MOUSE (Mitochondrial ornithine transporter 1 OS=Mus musculus GN=Slc25a15 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.247e-17
Identity = 58/167 (34.73%), Postives = 81/167 (48.50%), Query Frame = 2
Query:  221 AKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPG----APLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGL 709
            A DL +G  GG A ++ G PFDT+KVK+Q+        P  Y G  D   +T +  G RG YKG    L    A N++LF   G  + ++R   G    A L+  Q    G+ A    + + CPTEL+KCRLQ    +  SG+  +A        V K + R +G L
Sbjct:   10 AIDLTAGAAGGTACVLTGQPFDTMKVKMQT-------FPDLYRGLTDCCLKTYSQVGFRGFYKGTSPALIANIAENSVLFMCYGFCQQVVRKVVGLDQQAKLSDLQNAAAGSFASAFAALVLCPTELVKCRLQTMYEMETSGK--IAASQNTVWSVVKEIFRKDGPL 167          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: S2545_MOUSE (Solute carrier family 25 member 45 OS=Mus musculus GN=Slc25a45 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.077e-16
Identity = 59/172 (34.30%), Postives = 88/172 (51.16%), Query Frame = 2
Query:  224 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALL-----RSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAV-KYGGPVDVAKRVLRSEGGLRGLF 721
            ++  +G + GA  L+ GHPFDT+KV+LQ+Q          Y G +D V +T   E   G +KGM  P+A+VA  N++LF V       L     + +   P +     I G   G+  ++   P +LIK RLQ Q+      Q+  ++ +Y GPV  A  +LR EG  +GLF
Sbjct:    4 EEFVAGWISGAVGLVLGHPFDTVKVRLQTQST--------YQGIVDCVVKTYRHESVLGFFKGMSFPIASVALVNSVLFGVYSNTLLALTATSHQERRAQPPSYTNIFIAGCTGGLLQAYCLAPFDLIKVRLQNQT--EPRMQISSSMPRYRGPVHCAASILREEGP-QGLF 164          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: HDCPB_DANRE (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog B OS=Danio rerio GN=hdmcpb PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 57/169 (33.73%), Postives = 87/169 (51.48%), Query Frame = 2
Query:  227 DLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLF-TVRGQMEALLRSQ---PGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            D  +G+VGGA  +  G+P DT+KV+LQ+Q          Y+G    V++T   EG +G Y+GM  P++TV+  ++L+F T R  ++ L + Q    G P       + G   GV    +  P +++K RLQ Q+          + KY GPV    R+ R E GL GL+
Sbjct:    5 DFLAGSVGGAFGVAVGYPLDTVKVRLQTQTG--------YSGFWQCVRKTCRNEGLQGFYRGMSMPISTVSISSSLVFGTYRNILQFLHQLQHRSAGEPHHKAHIFLAGFTGGVTQVLVMAPADIVKVRLQCQTEPVQHISQESSSKYRGPVQCLLRIARDE-GLLGLY 164          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: YMC2_YEAST (Carrier protein YMC2, mitochondrial OS=Saccharomyces cerevisiae GN=YMC2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 59/185 (31.89%), Postives = 90/185 (48.65%), Query Frame = 2
Query:  218 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGA----------------PLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGL-RGLF 721
            + KD+F+GT+GG AQ++ G PFDT KV+LQ+               ++ ++  +  EG    YKG   PL  V    ++ F V   M+   ++   +                 L ++Q  +CG   GV  SFLA P E I+ RLQ Q++  G  +      + GP D  K+ L+++GGL RGLF
Sbjct:   34 VLKDIFAGTIGGIAQVLVGQPFDTTKVRLQTATT--------RTTTLEVLRNLVKNEGVFAFYKGALTPLLGVGICVSVQFGVNEAMKRFFQNYNASKNPNMSSQDVDLSRSNTLPLSQYYVCGLTGGVVNSFLASPIEQIRIRLQTQTSNGGDRE------FKGPWDCIKK-LKAQGGLMRGLF 203          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: MCP62_BOVIN (Putative mitochondrial carrier protein FLJ44862 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 53/181 (29.28%), Postives = 86/181 (47.51%), Query Frame = 2
Query:  224 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALL------RSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVK---------YGGPVDVAKRVLRSEGGLRGLF 721
            +D  +G +GGAA +I GHP DT+K +LQ+           Y   +  ++     E   G +KGM  PLA++A +N+++F V    +  L        + G P  ++  ++    AGV    L  P +LI+ RLQ Q+       +G+  +         Y GPV     ++R+E GL GL+
Sbjct:    7 EDFVAGWIGGAASVIVGHPLDTVKARLQAGSG--------YGSTLSCIRTVYRRESVFGFFKGMSFPLASIAVYNSVVFGVFSNTQRFLSHHRCQEPEAGPPHVLSDLLLASMVAGVVSVGLGAPVDLIEIRLQMQTQPFQEANLGLKPRVAALGEQPAYQGPVHCFATIVRTE-GLAGLY 178          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: MCP62_HUMAN (Putative mitochondrial carrier protein FLJ44862 OS=Homo sapiens PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15
Identity = 54/181 (29.83%), Postives = 86/181 (47.51%), Query Frame = 2
Query:  224 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALL------RSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVK---------YGGPVDVAKRVLRSEGGLRGLF 721
            +D  +G +GGAA +I GHP DT+K +LQ+           Y   +  ++     E   G +KGM  PLA++A +N+++F V    +  L        +   P T++  ++    AGV    L  P +LIK RLQ Q+       +G+  +         Y GPV     ++R+E GL GL+
Sbjct:    7 EDFAAGWIGGAASVIVGHPLDTVKTRLQAGVG--------YGNTLSCIRVVYRRESMFGFFKGMSFPLASIAVYNSVVFGVFSNTQRFLSQHRCGEPEASPPRTLSDLLLASMVAGVVSVGLGGPVDLIKIRLQMQTQPFRDANLGLKSRAVAPAEQPAYQGPVHCITTIVRNE-GLAGLY 178          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: S2545_HUMAN (Solute carrier family 25 member 45 OS=Homo sapiens GN=SLC25A45 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15
Identity = 59/177 (33.33%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  224 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALL--------RSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQS---ALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            ++  +G + GA  L+ GHPFDT+KV+LQ+Q          Y G +D + +    E   G +KGM  P+A++A  N++LF V      +L        R+QP + + +    + G   G   ++   P +LIK RLQ Q+   A  GS       +Y GPV  A  + R EG  RGLF
Sbjct:    4 EEFVAGWISGALGLVLGHPFDTVKVRLQTQTT--------YRGIVDCMVKIYRHESLLGFFKGMSFPIASIAVVNSVLFGVYSNTLLVLTATSHQERRAQPPSYMHI---FLAGCTGGFLQAYCLAPFDLIKVRLQNQTEPRAQPGS----PPPRYQGPVHCAASIFREEGP-RGLF 164          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: HDCPA_DANRE (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog A OS=Danio rerio GN=hdmcpa PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.831e-14
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = 2
Query:  227 DLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLF-TVRGQMEAL--LRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQ--SALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            D  +G+ GGA  +  G+P DT+KV++Q+Q         ++ G    +  TI  EG  G +KGM  P+ T++  ++++F T R  ++AL  +R      L V    + G   GVA   +  P +++K RLQ Q  S  + + +  V  KY GP+     + R E GL GL+
Sbjct:    5 DFLAGSFGGACGVAVGYPLDTVKVRIQTQ--------KQFTGIWQCIVLTIRKEGVHGFFKGMFLPITTISMTSSVVFGTYRNCLQALSYIRKAENTKLDV---FMSGLAGGVAQVSVMSPGDIVKVRLQCQTESRHSVNPKYSVKPKYSGPIHCLLSICR-EQGLSGLY 162          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: HDMCP_HUMAN (Hepatocellular carcinoma down-regulated mitochondrial carrier protein OS=Homo sapiens GN=HDMCP PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 58/187 (31.02%), Postives = 86/187 (45.99%), Query Frame = 2
Query:  227 DLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLF-TVRGQMEALLR---SQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQS-------ALAGSGQVGV-----------AVKYGGPVDVAKRVLRSEGGLRGLF 721
            D  +G +GG   +  G+P DT+KV++Q++        PKY G    V+ T   E   G Y+G+  P+ TV+  +++ F T R  +  + R     P A  T     + G  +G+   FL  PTE+ K RLQ Q+        L+ SG + V             KY GP+     V R E GL GL+
Sbjct:    2 DFVAGAIGGVCGVAVGYPLDTVKVRIQTE--------PKYTGIWHCVRDTYHRERVWGFYRGLSLPVCTVSLVSSVSFGTYRHCLAHICRLRYGNPDAKPTKADITLSGCASGLVRVFLTSPTEVAKVRLQTQTQAQKQQRRLSASGPLAVPPMCPVPPACPEPKYRGPLHCLATVAREE-GLCGLY 179          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 56/166 (33.73%), Postives = 78/166 (46.99%), Query Frame = 2
Query:  224 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            ++LF G   G   L+C +P D I+ +L  Q         KY G  D  K  I  EG  GLYKG+ A    VA + A+ FT    ++     +   P TV Q +  GA +G     L  P +LI+ RLQ Q      G  G  + Y G  D  ++++R EG L GL+
Sbjct:  243 ENLFVGGAAGVTSLLCTYPLDLIRSRLTVQVFG-----NKYNGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPKDTTP-TVVQSLTFGAISGATAQTLTYPIDLIRRRLQVQ------GIGGKDILYNGTFDAFRKIIRDEGVL-GLY 395          
The following BLAST results are available for this feature:
BLAST of CX296857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ORNT1_MOUSE8.247e-1734.73Mitochondrial ornithine transporter 1 OS=Mus muscu... [more]
S2545_MOUSE1.077e-1634.30Solute carrier family 25 member 45 OS=Mus musculus... [more]
HDCPB_DANRE1.837e-1633.73Hepatocellular carcinoma down-regulated mitochondr... [more]
YMC2_YEAST5.346e-1631.89Carrier protein YMC2, mitochondrial OS=Saccharomyc... [more]
MCP62_BOVIN1.555e-1529.28Putative mitochondrial carrier protein FLJ44862 ho... [more]
MCP62_HUMAN2.031e-1529.83Putative mitochondrial carrier protein FLJ44862 OS... [more]
S2545_HUMAN2.653e-1533.33Solute carrier family 25 member 45 OS=Homo sapiens... [more]
HDCPA_DANRE3.831e-1431.76Hepatocellular carcinoma down-regulated mitochondr... [more]
HDMCP_HUMAN1.115e-1331.02Hepatocellular carcinoma down-regulated mitochondr... [more]
MCFB_DICDI1.901e-1333.73Mitochondrial substrate carrier family protein B O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803F01SK FerrChloL1 Citrus clementina cDNA clone C05803F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296857 ID=CX296857; Name=CX296857; organism=Citrus clementina; type=EST; length=721bp
CATTAAAAAGTAAACCCGAAGAAAAAATCAGAAAAATAAAACCCAGTTCC
TTTTTCCTGGCGTTTTTTTAATTTGTATACCCTCCTTTTAATCTAATACT
TTGTGTTTTCTCAAATTGAATCATTTGAGGGAAACAACTTTTCTCCACTA
GATTCGGTTGCCGTTCTCGGGGCTCTGCTTACTCCGGTGTCAGTGAGAAT
CGGCTCTGATGGGAGACATAGCCAAGGATCTATTTTCTGGGACTGTTGGA
GGGGCAGCACAATTAATATGTGGGCACCCATTTGATACCATCAAGGTCAA
GCTTCAAAGCCAGCCTGCTCCACTCCCTGGCCAACCTCCCAAGTATGCTG
GTGCCATGGATGCTGTCAAGCAAACCATAGCTGCCGAAGGGCCAAGGGGC
TTGTACAAAGGTATGGGAGCTCCACTAGCTACTGTTGCCGCTTTTAATGC
CCTCCTATTTACAGTGAGAGGACAAATGGAGGCACTGCTCAGATCTCAAC
CTGGTGCCCCACTAACCGTCAACCAGCAGATTATTTGCGGGGCTGGGGCT
GGTGTTGCTGTTTCTTTTCTTGCTTGCCCCACAGAATTGATCAAATGCAG
GTTGCAAGCCCAAAGTGCATTAGCAGGTTCTGGCCAAGTTGGTGTGGCAG
TGAAGTATGGTGGACCAGTGGATGTGGCTAAGCGTGTTCTTAGATCAGAA
GGCGGTCTTAGGGGTCTCTTC
back to top