CX296857

Overview
NameCX296857
Unique NameCX296857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3319 contig Ccv1_Contig3319:281..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: MCP62_MOUSE (Putative mitochondrial carrier protein FLJ44862 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 51/176 (28.98%), Postives = 82/176 (46.59%), Query Frame = 2
Query:  224 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRS------QPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGV----AVKYGGPVDVAKRVLRSEGGLRGLF 721
            +D  +G +GG A +I G+P DT+K +LQ+           YA   + ++     E   G +KGM  PLA++A +N+++F V    +  L        + G   +++  ++     GV    L  P ELIK RLQ Q+        G+       Y GPV     +++ E GL GL+
Sbjct:    7 EDFVAGWIGGVASVIVGYPLDTVKTRLQAGVG--------YANTFNCIRMVYKRERVFGFFKGMSFPLASIAIYNSVVFGVFSNTQRFLSKYRCGELEAGPGRSLSDLLLASMLTGVVSVGLGGPVELIKIRLQMQTQPFREASHGLKSRAVAAYQGPVHCIATIVQME-GLTGLY 173          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: HDMCP_MOUSE (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog OS=Mus musculus GN=Hdmcp PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 57/189 (30.16%), Postives = 85/189 (44.97%), Query Frame = 2
Query:  227 DLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLF-TVRGQMEALLRSQPG---APLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQ----------SALAGSGQVGVA----------VKYGGPVDVAKRVLRSEGGLRGLF 721
            D  +G +GG   +  G+P DT+KV++Q++         KYAG    ++ T   E   G Y+G+  P+ TV+  +++ F T    +  + R + G   A  T     + G  +G+   FL  PTE+ K RLQ Q          SA   SG   +            KY GP+     V R E GLRGL+
Sbjct:    2 DFVAGAIGGVCGVAVGYPLDTVKVRIQTE--------AKYAGIWHCIRDTYRQERVWGFYRGLSLPVCTVSLVSSVSFGTYHHCLAHICRFRYGSTDAKPTKADITLSGCASGLVRVFLTSPTEVAKVRLQTQTQAQTQQRRSSASWTSGAPALCPTPTACLEPRPKYSGPLHCLVTVAREE-GLRGLY 181          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: ORT1_YEAST (Mitochondrial ornithine carrier protein OS=Saccharomyces cerevisiae GN=ORT1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 49/166 (29.52%), Postives = 78/166 (46.99%), Query Frame = 2
Query:  227 DLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEG-PRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            D+ +G++ GA   +   PFDT+KV+LQ+Q + +      +      +K T   EG  RG ++G+ +PL      NA LF    Q    L         + Q +I G  AG   S +  P EL+KC+LQ  +    S +     K+   +   K ++ +E GL GL+
Sbjct:   16 DIINGSIAGACGKVIEFPFDTVKVRLQTQASNV------FPTTWSCIKFTYQNEGIARGFFQGIASPLVGACLENATLFVSYNQCSKFLEKHTNV-FPLGQILISGGVAGSCASLVLTPVELVKCKLQVANLQVASAK----TKHTKVLPTIKAII-TERGLAGLW 169          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: TPC_MACFA (Mitochondrial thiamine pyrophosphate carrier OS=Macaca fascicularis GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 51/163 (31.29%), Postives = 76/163 (46.63%), Query Frame = 2
Query:  239 GTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVN---QQIICGAGAGVAVSFLACPTELIKCRLQA---QSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGL 709
            G +      +  HP D ++ +  +Q     G+P  Y     AV     +EGP+  YKG+   L  +  +  L F+    ++ L +    A    N   Q ++CG+GAGV    L  P +L K RLQ    + A A  GQV    +Y G +D AK+VL+ EG L
Sbjct:  125 GGLAACTATLTVHPVDVLRTRFAAQ-----GEPKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAMPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVR---RYKGLMDCAKQVLQKEGAL 279          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: TPC_PONAB (Mitochondrial thiamine pyrophosphate carrier OS=Pongo abelii GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 50/151 (33.11%), Postives = 73/151 (48.34%), Query Frame = 2
Query:  275 HPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVN---QQIICGAGAGVAVSFLACPTELIKCRLQA---QSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGL 709
            HP D ++ +  +Q     G+P  Y     AV     +EGP+  YKG+   L  +  +  L F+    ++ L +    A    N   Q ++CG+GAGV    L  P +L K RLQ    + A A  GQV    +Y G +D AK+VL+ EG L
Sbjct:  137 HPVDVLRTRFAAQ-----GEPKVYNTLCHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVR---RYKGLMDCAKQVLQKEGAL 279          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: TPC_HUMAN (Mitochondrial thiamine pyrophosphate carrier OS=Homo sapiens GN=SLC25A19 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 50/151 (33.11%), Postives = 73/151 (48.34%), Query Frame = 2
Query:  275 HPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVN---QQIICGAGAGVAVSFLACPTELIKCRLQA---QSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGL 709
            HP D ++ +  +Q     G+P  Y     AV     +EGP+  YKG+   L  +  +  L F+    ++ L +    A    N   Q ++CG+GAGV    L  P +L K RLQ    + A A  GQV    +Y G +D AK+VL+ EG L
Sbjct:  137 HPVDVLRTRFAAQ-----GEPKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVR---RYKGLMDCAKQVLQKEGAL 279          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: ODC2_YEAST (Mitochondrial 2-oxodicarboxylate carrier 2 OS=Saccharomyces cerevisiae GN=ODC2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 48/168 (28.57%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  236 SGTVGGAAQLICGHPFDTIKVKLQSQ-----PAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQ-QIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            SG V G ++L   +P D +K + Q +      A +  Q  +Y G +D +K+ +  EG   LY+G+ +P+   A   A  F    Q + + ++      T  +  I  GA AG+  + +  P ELIK R+Q            V   Y GP+D  K+ +++E G+ GL+
Sbjct:   18 SGAVAGISELTVMYPLDVVKTRFQLEVTTPTAAAVGKQVERYNGVIDCLKKIVKKEGFSRLYRGISSPMLMEAPKRATKFACNDQYQKIFKNLFNTNETTQKISIAAGASAGMTEAAVIVPFELIKIRMQ-----------DVKSSYLGPMDCLKKTIKNE-GIMGLY 173          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: UCP1_CANFA (Mitochondrial brown fat uncoupling protein 1 OS=Canis familiaris GN=UCP1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 58/178 (32.58%), Postives = 79/178 (44.38%), Query Frame = 2
Query:  212 GDIAKDLFSGTVGGAAQLIC-----GHPFDTIKVKLQSQPAPLPGQPPK---YAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLF 721
            G  A    S  +  AA   C       P DT KV+LQ Q     GQPP+   Y G +  V      EG + LY G+ A L     F +L   +   +   L    GA  ++  +I  G   G A  F+  PTE++K RLQAQS L G        +Y G  + A R++ +  GL GL+
Sbjct:    6 GSDAPPTLSVRIAAAAGAACLADMITFPLDTAKVRLQIQGEG-QGQPPRAPRYRGVLGTVATLARTEGLQKLYSGLPAGLQRQVGFASLRIGLYDSVREWLSPGQGAAASLGSRISAGVMTGGAAVFIGQPTEVVKVRLQAQSHLHGR-----KPRYTGTYN-AYRIIATTEGLTGLW 176          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: AGC1_ASHGO (Mitochondrial aspartate-glutamate transporter AGC1 OS=Ashbya gossypii GN=AGC1 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 43/126 (34.13%), Postives = 65/126 (51.59%), Query Frame = 2
Query:  239 GTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQS 616
            G+V G    +  +P D +K ++Q+Q         KY  ++D + + ++ EG RGLY G+G  L  VA   A+  TV   M A L  + G  L++  +II GA AG        P E++K RLQ +S
Sbjct:  530 GSVAGCIGAMVVYPIDMVKTRMQAQR-----DFSKYKNSIDCLLKILSKEGVRGLYSGLGPQLIGVAPEKAIKLTVNDHMRATLAGRDG-KLSLPCEIISGATAGACQVVFTNPLEIVKIRLQVKS 649          
BLAST of CX296857 vs. ExPASy Swiss-Prot
Match: MCP62_DANRE (Putative mitochondrial carrier protein FLJ44862 homolog OS=Danio rerio GN=zgc:92090 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 52/184 (28.26%), Postives = 86/184 (46.74%), Query Frame = 2
Query:  227 DLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALL---RSQPGA-PLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSA--------LAGSGQV-----GVAVK--YGGPVDVAKRVLRSEGGLRGLF 721
            D  +G +GGA+ +I GHP DT+K +LQ+           Y      V      E   G +KG+  PLA++  +N+++F      + L+   R   G  P ++    +     G+    +  P +L+K RLQ Q+         LAG+G V     G+  +  Y GP+     VL++E G++GL+
Sbjct:    8 DFLAGWIGGASSVIVGHPLDTVKTRLQAGKG--------YKNTFHCVVTIYKKENVIGFFKGLSFPLASITLYNSMVFGFFSNTQRLISKYRYGDGRHPCSMLDLTVASMLTGLVSVGVGAPVDLVKIRLQMQTQPVLAENFNLAGNGSVPLRSMGIQSQSFYRGPLHCISTVLQNE-GIQGLY 182          
The following BLAST results are available for this feature:
BLAST of CX296857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
MCP62_MOUSE5.532e-1328.98Putative mitochondrial carrier protein FLJ44862 ho... [more]
HDMCP_MOUSE6.116e-1230.16Hepatocellular carcinoma down-regulated mitochondr... [more]
ORT1_YEAST7.988e-1229.52Mitochondrial ornithine carrier protein OS=Sacchar... [more]
TPC_MACFA1.043e-1131.29Mitochondrial thiamine pyrophosphate carrier OS=Ma... [more]
TPC_PONAB1.780e-1133.11Mitochondrial thiamine pyrophosphate carrier OS=Po... [more]
TPC_HUMAN1.780e-1133.11Mitochondrial thiamine pyrophosphate carrier OS=Ho... [more]
ODC2_YEAST1.780e-1128.57Mitochondrial 2-oxodicarboxylate carrier 2 OS=Sacc... [more]
UCP1_CANFA3.035e-1132.58Mitochondrial brown fat uncoupling protein 1 OS=Ca... [more]
AGC1_ASHGO3.035e-1134.13Mitochondrial aspartate-glutamate transporter AGC1... [more]
MCP62_DANRE3.964e-1128.26Putative mitochondrial carrier protein FLJ44862 ho... [more]

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Properties
Property NameValue
Genbank descriptionC05803F01SK FerrChloL1 Citrus clementina cDNA clone C05803F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296857 ID=CX296857; Name=CX296857; organism=Citrus clementina; type=EST; length=721bp
CATTAAAAAGTAAACCCGAAGAAAAAATCAGAAAAATAAAACCCAGTTCC
TTTTTCCTGGCGTTTTTTTAATTTGTATACCCTCCTTTTAATCTAATACT
TTGTGTTTTCTCAAATTGAATCATTTGAGGGAAACAACTTTTCTCCACTA
GATTCGGTTGCCGTTCTCGGGGCTCTGCTTACTCCGGTGTCAGTGAGAAT
CGGCTCTGATGGGAGACATAGCCAAGGATCTATTTTCTGGGACTGTTGGA
GGGGCAGCACAATTAATATGTGGGCACCCATTTGATACCATCAAGGTCAA
GCTTCAAAGCCAGCCTGCTCCACTCCCTGGCCAACCTCCCAAGTATGCTG
GTGCCATGGATGCTGTCAAGCAAACCATAGCTGCCGAAGGGCCAAGGGGC
TTGTACAAAGGTATGGGAGCTCCACTAGCTACTGTTGCCGCTTTTAATGC
CCTCCTATTTACAGTGAGAGGACAAATGGAGGCACTGCTCAGATCTCAAC
CTGGTGCCCCACTAACCGTCAACCAGCAGATTATTTGCGGGGCTGGGGCT
GGTGTTGCTGTTTCTTTTCTTGCTTGCCCCACAGAATTGATCAAATGCAG
GTTGCAAGCCCAAAGTGCATTAGCAGGTTCTGGCCAAGTTGGTGTGGCAG
TGAAGTATGGTGGACCAGTGGATGTGGCTAAGCGTGTTCTTAGATCAGAA
GGCGGTCTTAGGGGTCTCTTC
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