CX296862

Overview
NameCX296862
Unique NameCX296862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length761
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296862_ssr134 microsatellite CX296862_ssr134:134..145. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX296862 vs. ExPASy Swiss-Prot
Match: CP133_DROME (Probable cytochrome P450 313a3 OS=Drosophila melanogaster GN=Cyp313a3 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11
Identity = 42/121 (34.71%), Postives = 72/121 (59.50%), Query Frame = -3
Query:  307 VTEADIDQLQYLKMVIKETLRLHPPAPLLIARDTLYRFKVNGYDIYPKTL-IQVNAWAIGRDSKYWES-PEEFIPERFIDKPVDVKGQD-FEYLPFGSGRRICPGINLGLIMSELALANLL 660
            VT  D+ ++ +L+ V+ ETLRL P  P    R+T+  F+++   + PK + I ++ +A  R+  +W + P  F P+ F+  P +V+ +  + Y+PF  GRR C G   GL+ S+LAL+ +L
Sbjct:  339 VTYDDLQRMVFLERVVNETLRLIPSVPFT-PRETIRDFRLSSGVVIPKGVGIGIDIFATHRNRDHWGTDPSSFNPDHFL--PDNVRDRHPYAYIPFSKGRRNCIGWKYGLMSSKLALSKIL 456          
BLAST of CX296862 vs. ExPASy Swiss-Prot
Match: C513F_DICDI (Probable cytochrome P450 513F1 OS=Dictyostelium discoideum GN=cyp513f1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11
Identity = 53/169 (31.36%), Postives = 77/169 (45.56%), Query Frame = -3
Query:  250 NPRLMKKAQAEIRNHIGNKGRVTEADIDQLQYLKMVIKETLRLHPPAPLLIARDTLYRFKVNGYDIYPKTLIQVNAWAIGRDSKYWESPEEFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLL--YCFDWKLPN---------GREEDCVNMN 723
            NP + +K   EI  ++ N   ++  D  +  Y   VIKET RL+  APL          ++ G+ I   T I  N ++  R  +YW+ P  FIPERFID   ++K ++   + FG G R C G +    M  L +  L+  Y F    PN         G   +C N N
Sbjct:  331 NPEIQEKVYNEIITNLKND-EISINDRFKCPYTCAVIKETHRLYSIAPLSEPHYCSNDVEIKGFKIAKGTQIIQNIYSSSRSEQYWDKPLSFIPERFIDN-ANIKEKNKNIVSFGLGLRGCIGKSFAEYMIFLTVVRLIKNYKFSNPSPNQPLKEIGEYGLVMNCANYN 497          
BLAST of CX296862 vs. ExPASy Swiss-Prot
Match: C4D21_DROME (Probable cytochrome P450 4d21 OS=Drosophila melanogaster GN=Cyp4d21 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11
Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = -3
Query:  205 VTEADIDQLQYLKMVIKETLRLHPPAPLLIARDTLYRFKVNGYDIYPKTLIQVNAWAIGRDSKYWESPEEFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWKLPNGRE-EDCVNMNMEEATGVSLTLSKKT 660
            VT+  + +L+YL  VIKET+RLHPP P+L  R      K+    I   T I +  + + RD +Y+  P  F PER++D           Y+PF SG + C G     +  +  ++ ++  ++  LP G + +      +  +TG ++ L  +T
Sbjct:  358 VTQTKLLELKYLDCVIKETMRLHPPVPIL-GRYIPEDLKIGEITIPGNTSILLMPYYVYRDPEYFPDPLVFKPERWMDMKTTSNTPPLAYIPFSSGPKNCIGQKFANLQMKALISKVIRHYE-LLPLGADLKATYTFILSSSTGNNVGLKPRT 508          
BLAST of CX296862 vs. ExPASy Swiss-Prot
Match: CP6D2_DROME (Probable cytochrome P450 6d2 OS=Drosophila melanogaster GN=Cyp6d2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 45/149 (30.20%), Postives = 78/149 (52.35%), Query Frame = -3
Query:  295 PRLMKKAQAEI-----RNHIGNKGRVTEADIDQLQYLKMVIKETLRLHPPAPLLIARDTLYRFKVNGYD--IYPKTLIQVNAWAIGRDSKYWESPEEFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFD 720
            P L+K+AQ E+     ++++  K R T   +  L++L + I ET+R +P  P L  R+    + V G +  I   T I ++ + + RD  Y+ +P  + P RF    ++       Y+PFG G R C  + +G + S++A+A +L  FD
Sbjct:  334 PELLKEAQEEVDAVLMKHNLKPKDRFTYEAVQDLKFLDICIMETIRKYPGLPFL-NRECTEDYPVPGTNHIIAKGTPILISLFGMQRDPVYFPNPNGYDPHRFDSNNMNY--DQAAYMPFGEGPRHCIALRMGKVNSKVAVAKILANFD 479          
BLAST of CX296862 vs. ExPASy Swiss-Prot
Match: CP6A9_DROME (Cytochrome P450 6a9 OS=Drosophila melanogaster GN=Cyp6a9 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 58/181 (32.04%), Postives = 88/181 (48.62%), Query Frame = -3
Query:  196 LMKKAQAEIRNHIGN-KGRVTEADIDQLQYLKMVIKETLRLHPPAPLLIARDTLYRFKVNGYDIYPKTLIQ------VNAWAIGRDSKYWESPEEFIPERFIDKPVDVKGQD-FEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWKLPNGREEDCVNMNMEEATGVSLTLSKKTPLI 714
            +  + + E +  IG   G +T   +  + YL  VI ETLRL+   P+L  R+ L  ++V G+   PK +I+      +   A+ RD K + +P  F P+ F   P  VK +D  E+LPFG G R C G+  G + +   LA L+  F + +       C      E T + +  SKKT LI
Sbjct:  330 IQDRVRKECQEVIGKYNGEITYESMKDMVYLDQVISETLRLYTVLPVL-NRECLEDYEVPGH---PKYVIKKGMPVLIPCGAMHRDEKLYANPNTFNPDNF--SPERVKERDSVEWLPFGDGPRNCIGMRFGQMQARSGLALLINRFKFSV-------C------EQTTIPIVYSKKTFLI 491          
BLAST of CX296862 vs. ExPASy Swiss-Prot
Match: CP2R1_HUMAN (Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 47/147 (31.97%), Postives = 67/147 (45.58%), Query Frame = -3
Query:  280 PRLMKKAQAEIRNHIGNKGRVTEADIDQLQYLKMVIKETLRLHPPAPLLIARDTLYRFKVNGYDIYPKTLIQVNAWAIGRDSKYWESPEEFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWKLPN 720
            P +  + Q EI   +G  G+ +  D  ++ Y + V+ E LR     PL I   T     V GY I   T +  N +++  D KYW  PE F PERF+D       ++   +PF  GRR C G +L  +   L    LL  F    P+
Sbjct:  330 PNIQGQVQKEIDLIMGPNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKE-ALVPFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPH 475          
BLAST of CX296862 vs. ExPASy Swiss-Prot
Match: CP21A_MOUSE (Steroid 21-hydroxylase OS=Mus musculus GN=Cyp21 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 47/165 (28.48%), Postives = 73/165 (44.24%), Query Frame = -3
Query:  247 NPRLMKKAQAEIRNHIGNKGRVTEADIDQLQYLKMVIKETLRLHPPAPLLIARDTLYRFKVNGYDIYPKTLIQVNAWAIGRDSKYWESPEEFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCF------DWKLPNGREEDCVNMNM 723
            +P + K+ Q E+   +G   ++   +  QL  L   I E LRL P  PL +         ++GYDI    +I  N      D   WE P +F P+RF++      G++     FG G R+C G  L  +   + LA LL  F      D  LP+ + +    +N+
Sbjct:  305 HPEIQKRLQEELDLKLGPGSQLLYRNRMQLPLLMATIAEVLRLRPVVPLALPHRATRASSISGYDIPKDMVIIPNIQGANLDEMVWELPSKFWPDRFLE-----PGKNPRTPSFGCGARVCLGEPLARLELFVVLARLLQAFTLLPPPDGTLPSLQPQPYAGINL 464          
BLAST of CX296862 vs. ExPASy Swiss-Prot
Match: CP134_DROME (Probable cytochrome P450 313a4 OS=Drosophila melanogaster GN=Cyp313a4 PE=2 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 45/148 (30.41%), Postives = 77/148 (52.03%), Query Frame = -3
Query:  289 PRLMKKAQAEIRNHIGNKGR--VTEADIDQLQYLKMVIKETLRLHPPAPLLIARDTLYRFKVNGYDIYPKTL-IQVNAWAIGRDSKYW-ESPEEFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWK 720
            P   ++A  EI+    N G   V+ AD  Q+ YL +++ E++R+ PP P+ ++R T    K++   + PK + I ++ + + R  K W    E F P+ F+   +  K   + Y+PF  G R C G    LI +++ LA LL  + +K
Sbjct:  319 PEYQERAFEEIKTIFPNTGDFDVSYADTQQMVYLDLILNESMRVIPPVPV-VSRQTSQDLKLSNGIVVPKGVQIAIDIYHMHRSKKIWGPDAETFNPDHFLPHNIQDK-HPYAYIPFTKGIRNCIGWRYALISAKVTLAKLLRNYRFK 464          
BLAST of CX296862 vs. ExPASy Swiss-Prot
Match: C6A19_DROME (Probable cytochrome P450 6a19 OS=Drosophila melanogaster GN=Cyp6a19 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 53/177 (29.94%), Postives = 87/177 (49.15%), Query Frame = -3
Query:  211 NPRLMKKAQAEIRNHIGN-KGRVTEADIDQLQYLKMVIKETLRLHPPAPLLIARDTL-YRFKVNGYDIYPKTLIQVNAWAIGRDSKYWESPEEFIPERFIDKPVDVKGQDFEYLPFGSGRRICPGINLGLIMSELALANLLYCFDWKL----PNGREEDCVNMNMEEATGVSLTLSK 723
            N  +  K +AEI + +    G++    +  L Y++ VI E+LR HP    L    T  Y+     Y I   T + V+   I  D +++  PE+FIPERF ++ V  K     +LPFG+G R C G+  G +   + LA L++ F ++L    P   +    N+ +    G+ L ++K
Sbjct:  324 NQDVQDKLRAEIDSVLERYNGKLEYDSMQDLFYMEKVINESLRKHPVVAHLARIATKPYQHSNPKYFIEAGTGVLVSTLGIHHDPEFYPEPEKFIPERFDEEQVK-KRPTCAFLPFGAGPRNCIGLRFGRMQVIIGLALLIHNFRFELHPKTPVPMKYTINNLLLGSEGGIHLNITK 499          
The following BLAST results are available for this feature:
BLAST of CX296862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 329
Match NameE-valueIdentityDescription
CP133_DROME7.460e-1134.71Probable cytochrome P450 313a3 OS=Drosophila melan... [more]
C513F_DICDI7.460e-1131.36Probable cytochrome P450 513F1 OS=Dictyostelium di... [more]
C4D21_DROME7.460e-1129.41Probable cytochrome P450 4d21 OS=Drosophila melano... [more]
CP6D2_DROME9.743e-1130.20Probable cytochrome P450 6d2 OS=Drosophila melanog... [more]
CP6A9_DROME9.743e-1132.04Cytochrome P450 6a9 OS=Drosophila melanogaster GN=... [more]
CP2R1_HUMAN9.743e-1131.97Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1... [more]
CP21A_MOUSE9.743e-1128.48Steroid 21-hydroxylase OS=Mus musculus GN=Cyp21 PE... [more]
CP134_DROME9.743e-1130.41Probable cytochrome P450 313a4 OS=Drosophila melan... [more]
C6A19_DROME9.743e-1129.94Probable cytochrome P450 6a19 OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionC05803F07SK FerrChloL1 Citrus clementina cDNA clone C05803F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296862 ID=CX296862; Name=CX296862; organism=Citrus clementina; type=EST; length=761bp
TTTTTTTTTTACGGCGAATCCATACATAATTTAGGTGATGATAATACATT
ATCCTCAAATACATGATTACAAGTGATTACATTACAATCAACCACAACTT
GTACAGGAAGTTGAGGAAGTTACAACAGAGCAATGTTGTTGTTGTCTTTC
ATTTTTCTGATGGCTATGCTACTGGAGGTAATTGACTGGCACAAGGATAA
GAGGCGTCTTTTTAGAGAGAGTGAGAGACACACCAGTTGCCTCCTCCATG
TTCATGTTAACACAATCCTCCTCCCTTCCATTCGGCAATTTCCAATCAAA
ACAATACAAGAGATTTGCAAGCGCAAGCTCCGACATTATTAATCCCAAAT
TAATCCCAGGACAAATTCTTCGGCCGGATCCAAATGGTAAATATTCGAAA
TCTTGTCCTTTAACATCAACCGGCTTATCAATAAACCTTTCTGGGATGAA
TTCTTCAGGACTCTCCCAGTACTTTGAATCTCTTCCAATTGCCCAGGCAT
TCACTTGGATCAACGTTTTGGGATAAATGTCATAACCATTAACTTTGAAA
CGATACAGGGTATCTCTCGCAATTAATAGTGGGGCAGGAGGGTGCAGTCT
CAGAGTTTCCTTGATCACCATCTTCAGGTACTGAAGTTGATCAATATCGG
CTTCGGTAACTCTTCCTTTGTTTCCGATATGATTTCTGATTTCAGCTTGT
GCTTTTTTCATCAATCTTGGATTCTACAGAGCTCTGCCATTGCCCAATCA
CCGTAATGCGC
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