CX296866

Overview
NameCX296866
Unique NameCX296866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10434 contig Ccv1_Contig10434:5..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC4_ARATH (Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 8.896e-90
Identity = 159/171 (92.98%), Postives = 168/171 (98.25%), Query Frame = 3
Query:  180 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            ASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI+T QGEEL+KLIG+  YIECSSKTQQNVKAVFDAA
Sbjct:    2 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAA 172          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC7_ORYSJ (Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.420e-87
Identity = 152/173 (87.86%), Postives = 167/173 (96.53%), Query Frame = 3
Query:  174 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            MS +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKWIPEL+HYAP VPI+LVGTKLDLR+DKQFF+DHPG  PISTAQGEEL+++IGA AYIECSSKTQQNVK+VFD+A
Sbjct:    1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKLDLREDKQFFLDHPGLAPISTAQGEELKRMIGAAAYIECSSKTQQNVKSVFDSA 173          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC13_GOSHI (Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.423e-87
Identity = 154/173 (89.02%), Postives = 165/173 (95.38%), Query Frame = 3
Query:  174 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            MS +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKWIPEL+HYA  VP++LVGTKLDLRDDKQF IDHPGA PIST+QGEEL+K+IGA  YIECSSKTQQNVKAVFDAA
Sbjct:    1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPELRHYAHNVPVVLVGTKLDLRDDKQFLIDHPGATPISTSQGEELKKMIGAVTYIECSSKTQQNVKAVFDAA 173          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC2_ARATH (Rac-like GTP-binding protein ARAC2 OS=Arabidopsis thaliana GN=ARAC2 PE=1 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.133e-87
Identity = 153/173 (88.44%), Postives = 164/173 (94.80%), Query Frame = 3
Query:  174 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            MS +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKW+PELKHYAPG+PI+LVGTKLDLRDDKQF  DHPGA  I+TAQGEELRK+IGA  Y+ECSSKTQQNVKAVFD A
Sbjct:    1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTA 173          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC2_LOTJA (Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 9.206e-87
Identity = 151/173 (87.28%), Postives = 166/173 (95.95%), Query Frame = 3
Query:  174 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            MS +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+SKKWIPEL+HYAP VPI+LVGTKLDLR+D+Q+ IDHPGA PI+TAQGEEL+K IGA  Y+ECSSKTQQNVKAVFDAA
Sbjct:    1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKLDLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYLECSSKTQQNVKAVFDAA 173          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC9_GOSHI (Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum GN=RAC9 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.736e-85
Identity = 151/173 (87.28%), Postives = 164/173 (94.80%), Query Frame = 3
Query:  174 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            M+ SRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLIS+ASYENV KKWIPEL+HYAP VPI+LVGTKLDLRDDKQF  D+PGA+ I+T+QGEEL+K+IGA  YIECSSKTQQNVKAVFD A
Sbjct:    1 MNTSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVHKKWIPELRHYAPNVPIVLVGTKLDLRDDKQFLSDNPGAISITTSQGEELKKMIGAVTYIECSSKTQQNVKAVFDVA 173          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC4_ORYSJ (Rac-like GTP-binding protein 4 OS=Oryza sativa subsp. japonica GN=RAC4 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.125e-84
Identity = 148/172 (86.05%), Postives = 162/172 (94.19%), Query Frame = 3
Query:  177 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            SASRFIKCVTVGDGAVGKTC+LI YTSN FPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKW+PEL+HYAPGVPI+LVGTKLDLR+DK + +DHP  VP++TAQGEELRK IGA  YIECSSKTQQNVKAVFDAA
Sbjct:    4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYVPTVFDNFSANVVVDGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVMKKWLPELQHYAPGVPIVLVGTKLDLREDKHYLLDHPSLVPVTTAQGEELRKHIGATCYIECSSKTQQNVKAVFDAA 175          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC3_ORYSJ (Rac-like GTP-binding protein 3 OS=Oryza sativa subsp. japonica GN=RAC3 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.585e-84
Identity = 145/172 (84.30%), Postives = 161/172 (93.60%), Query Frame = 3
Query:  177 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            SASRFIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVVV+ +TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HYAPGVPI+LVGTKLDLR+DK + +DHPG +P++TAQGEELRK IGA  YIECSSKTQQNVK VFDAA
Sbjct:    4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVDSTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGTKLDLREDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYIECSSKTQQNVKGVFDAA 175          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC10_ARATH (Rac-like GTP-binding protein ARAC10 OS=Arabidopsis thaliana GN=ARAC10 PE=1 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 4.728e-83
Identity = 144/172 (83.72%), Postives = 161/172 (93.60%), Query Frame = 3
Query:  177 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            SAS+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVVV G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+L+FSL+S+ASYENV KKWIPEL+H+APGVP++LVGTKLDLR+DK +  DHPG  P++TAQGEELRKLIGA  YIECSSKTQQNVKAVFD+A
Sbjct:    4 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGTKLDLREDKHYLADHPGLSPVTTAQGEELRKLIGATYYIECSSKTQQNVKAVFDSA 175          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC8_ARATH (Rac-like GTP-binding protein ARAC8 OS=Arabidopsis thaliana GN=ARAC8 PE=1 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 1.987e-81
Identity = 143/172 (83.14%), Postives = 158/172 (91.86%), Query Frame = 3
Query:  177 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            SAS+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFS NVVV G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLIS+ASYENV KKWIPEL+H+APGVPI+LVGTK+DLR+D+ +  DHPG  P++T+QGEELRK IGA  YIECSSKTQQNVKAVFDAA
Sbjct:    4 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSVNVVVEGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVFKKWIPELQHFAPGVPIVLVGTKMDLREDRHYLSDHPGLSPVTTSQGEELRKHIGATYYIECSSKTQQNVKAVFDAA 175          
The following BLAST results are available for this feature:
BLAST of CX296866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC4_ARATH8.896e-9092.98Rac-like GTP-binding protein ARAC4 OS=Arabidopsis ... [more]
RAC7_ORYSJ1.420e-8787.86Rac-like GTP-binding protein 7 OS=Oryza sativa sub... [more]
RAC13_GOSHI2.423e-8789.02Rac-like GTP-binding protein RAC13 OS=Gossypium hi... [more]
RAC2_ARATH4.133e-8788.44Rac-like GTP-binding protein ARAC2 OS=Arabidopsis ... [more]
RAC2_LOTJA9.206e-8787.28Rac-like GTP-binding protein RAC2 OS=Lotus japonic... [more]
RAC9_GOSHI1.736e-8587.28Rac-like GTP-binding protein RAC9 OS=Gossypium hir... [more]
RAC4_ORYSJ1.125e-8486.05Rac-like GTP-binding protein 4 OS=Oryza sativa sub... [more]
RAC3_ORYSJ5.585e-8484.30Rac-like GTP-binding protein 3 OS=Oryza sativa sub... [more]
RAC10_ARATH4.728e-8383.72Rac-like GTP-binding protein ARAC10 OS=Arabidopsis... [more]
RAC8_ARATH1.987e-8183.14Rac-like GTP-binding protein ARAC8 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC05803F11SK FerrChloL1 Citrus clementina cDNA clone C05803F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296866 ID=CX296866; Name=CX296866; organism=Citrus clementina; type=EST; length=693bp
TCACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGATGGCT
AATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGATCTGA
GGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGC
CACTGTCTTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGC
GTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTA
CACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATT
TCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGG
GATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCG
TGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTT
ATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCT
GGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAA
GCAGTTCTTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGG
GGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGT
TCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCA
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