CX296866

Overview
NameCX296866
Unique NameCX296866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10434 contig Ccv1_Contig10434:5..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC2_HUMAN (Ras-related C3 botulinum toxin substrate 2 OS=Homo sapiens GN=RAC2 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.613e-57
Identity = 108/169 (63.91%), Postives = 128/169 (75.74%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  L K I +  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC2_BOVIN (Ras-related C3 botulinum toxin substrate 2 OS=Bos taurus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.613e-57
Identity = 108/169 (63.91%), Postives = 128/169 (75.74%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  L K I +  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC2_MOUSE (Ras-related C3 botulinum toxin substrate 2 OS=Mus musculus GN=Rac2 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.412e-57
Identity = 108/169 (63.91%), Postives = 128/169 (75.74%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  L K I +  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSALTQRGLKTVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC3_MOUSE (Ras-related C3 botulinum toxin substrate 3 OS=Mus musculus GN=Rac3 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.820e-57
Identity = 106/169 (62.72%), Postives = 130/169 (76.92%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PI+LVGTKLDLRDDK     +      PI+  QG  + + IG+  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC3_HUMAN (Ras-related C3 botulinum toxin substrate 3 OS=Homo sapiens GN=RAC3 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.820e-57
Identity = 106/169 (62.72%), Postives = 130/169 (76.92%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PI+LVGTKLDLRDDK     +      PI+  QG  + + IG+  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC1_DROME (Ras-related protein Rac1 OS=Drosophila melanogaster GN=Rac1 PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 5.820e-57
Identity = 106/169 (62.72%), Postives = 129/169 (76.33%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   +NLGLWDTAGQEDY+RLRPLSY   DVF++ FSL++ AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC1A_DICDI (Rho-related protein rac1A OS=Dictyostelium discoideum GN=rac1A PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.297e-56
Identity = 108/169 (63.91%), Postives = 131/169 (77.51%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS+IS +S+ENV+ KW PE+ H+AP VPIILVGTKLD+R+DK  Q  +      PIS  QG    K I A  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSFENVNGKWHPEICHHAPNVPIILVGTKLDMREDKETQDRLKEKKLYPISYEQGLAKMKEINAVKYLECSALTQKGLKTVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC1B_DICDI (Rho-related protein rac1B OS=Dictyostelium discoideum GN=rac1B PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.693e-56
Identity = 106/169 (62.72%), Postives = 131/169 (77.51%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS++S AS+ENV+ KW PE+ H+AP VPIILVGTKLD+R+D+  Q  +      P+S  QG    K I A  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPASFENVNGKWHPEICHHAPNVPIILVGTKLDMREDRDTQDRLKEKKLYPVSYEQGLSKMKEINAVKYLECSALTQKGLKTVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC1C_DICDI (Rho-related protein rac1C OS=Dictyostelium discoideum GN=rac1C PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.212e-56
Identity = 108/169 (63.91%), Postives = 131/169 (77.51%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS+IS +SYENVS KW PE+ H+AP VPIILVGTK+D+R+DK  Q  +      P+S  QG    K I A  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSYENVSGKWGPEVFHHAPNVPIILVGTKMDMREDKETQDRLKEKKLYPVSYEQGLLKMKEINAFKYLECSALTQKGLKTVFDEA 172
[Close]
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC2_CAVPO (Ras-related C3 botulinum toxin substrate 2 OS=Cavia porcellus GN=RAC2 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 4.927e-56
Identity = 105/169 (62.13%), Postives = 128/169 (75.74%), Query Frame = 3 
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV   W P+++H+ P  PIIL+GTKLDLRDDK+    +      PI+  QG  L K I +  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVHANWYPKVRHHCPSTPIILLGTKLDLRDDKETIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 172
The following BLAST results are available for this feature:
BLAST of CX296866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC2_HUMAN2.613e-5763.91Ras-related C3 botulinum toxin substrate 2 OS=Homo... [more]
RAC2_BOVIN2.613e-5763.91Ras-related C3 botulinum toxin substrate 2 OS=Bos ... [more]
RAC2_MOUSE3.412e-5763.91Ras-related C3 botulinum toxin substrate 2 OS=Mus ... [more]
RAC3_MOUSE5.820e-5762.72Ras-related C3 botulinum toxin substrate 3 OS=Mus ... [more]
RAC3_HUMAN5.820e-5762.72Ras-related C3 botulinum toxin substrate 3 OS=Homo... [more]
RAC1_DROME5.820e-5762.72Ras-related protein Rac1 OS=Drosophila melanogaste... [more]
RAC1A_DICDI1.297e-5663.91Rho-related protein rac1A OS=Dictyostelium discoid... [more]
RAC1B_DICDI1.693e-5662.72Rho-related protein rac1B OS=Dictyostelium discoid... [more]
RAC1C_DICDI2.212e-5663.91Rho-related protein rac1C OS=Dictyostelium discoid... [more]
RAC2_CAVPO4.927e-5662.13Ras-related C3 botulinum toxin substrate 2 OS=Cavi... [more]

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Properties
Property NameValue
Genbank descriptionC05803F11SK FerrChloL1 Citrus clementina cDNA clone C05803F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296866 ID=CX296866; Name=CX296866; organism=Citrus clementina; type=EST; length=693bp
TCACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGATGGCT
AATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGATCTGA
GGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGC
CACTGTCTTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGC
GTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTA
CACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATT
TCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGG
GATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCG
TGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTT
ATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCT
GGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAA
GCAGTTCTTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGG
GGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGT
TCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCA
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