CX296866

Overview
NameCX296866
Unique NameCX296866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RASM_RAT (Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 52/156 (33.33%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 656
            K V VGDG VGK+ L I +    F  DY PT+ D++  +  ++     L + DTAGQE+++ +R    R  D F++ +S+  KAS+E+V +  + I  +K      P+ILV  K+DL   ++          ++  QG+E+      P YIE S+K
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNIP-YIETSAK 158          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 52/156 (33.33%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 656
            K V VGDG VGK+ L I +    F  DY PT+ D++  +  ++     L + DTAGQE+++ +R    R  D F++ +S+  KAS+E+V +  + I  +K      P+ILV  K+DL   ++          ++  QG+E+      P YIE S+K
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNIP-YIETSAK 158          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RASM_HUMAN (Ras-related protein M-Ras OS=Homo sapiens GN=MRAS PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 53/156 (33.97%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 656
            K V VGDG VGK+ L I +    F  DY PT+ D++  +  ++     L + DTAGQE+++ +R    R  D F++ +S+  KAS+E+V +  + I  +K      P+ILV  K+DL   ++          I+  QG+E+      P YIE S+K
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRK----------ITREQGKEMATKHNIP-YIETSAK 158          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RASEF_XENTR (RAS and EF-hand domain-containing protein OS=Xenopus tropicalis GN=rasef PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 55/166 (33.13%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  180 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH-YAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 671
            A +  K V  GD AVGK+  L+    N F  +   T+  +F    +VV+G    L LWDTAGQE +  +    +R AD  +L + +  + S+ NV ++WI  ++   +  +PI++VG K DLR      +   G + +ST  GE+L +  GA  + E S+K   N+
Sbjct:  519 AEKAYKIVLAGDAAVGKSSFLMRLCKNEFRGNTSATLGVDFQMKTLVVDGEPTILQLWDTAGQERFRSIAKSYFRRADGVLLLYDVTCEKSFLNV-REWIDMIEDATSEAIPIMMVGNKADLRQ----LMAEQGHICVSTNYGEKLSRTYGA-LFCETSAKEGSNI 678          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAP1B_RAT (Ras-related protein Rap-1b OS=Rattus norvegicus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D++           +   QG+ L +     A++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWSNCAFLESSAKSKINVNEIF 158          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAP1B_PONAB (Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D++           +   QG+ L +     A++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAP1B_PANTR (Ras-related protein Rap-1b OS=Pan troglodytes GN=RAP1B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D++           +   QG+ L +     A++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAP1B_MOUSE (Ras-related protein Rap-1b OS=Mus musculus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D++           +   QG+ L +     A++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAP1B_MACFA (Ras-related protein Rap-1b OS=Macaca fascicularis GN=RAP1B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D++           +   QG+ L +     A++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAP1B_HUMAN (Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1B PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D++           +   QG+ L +     A++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
The following BLAST results are available for this feature:
BLAST of CX296866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASM_RAT1.228e-1433.33Ras-related protein M-Ras OS=Rattus norvegicus GN=... [more]
RASM_MOUSE1.228e-1433.33Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
RASM_HUMAN1.228e-1433.97Ras-related protein M-Ras OS=Homo sapiens GN=MRAS ... [more]
RASEF_XENTR1.228e-1433.13RAS and EF-hand domain-containing protein OS=Xenop... [more]
RAP1B_RAT1.228e-1429.17Ras-related protein Rap-1b OS=Rattus norvegicus GN... [more]
RAP1B_PONAB1.228e-1429.17Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1... [more]
RAP1B_PANTR1.228e-1429.17Ras-related protein Rap-1b OS=Pan troglodytes GN=R... [more]
RAP1B_MOUSE1.228e-1429.17Ras-related protein Rap-1b OS=Mus musculus GN=Rap1... [more]
RAP1B_MACFA1.228e-1429.17Ras-related protein Rap-1b OS=Macaca fascicularis ... [more]
RAP1B_HUMAN1.228e-1429.17Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1... [more]

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Properties
Property NameValue
Genbank descriptionC05803F11SK FerrChloL1 Citrus clementina cDNA clone C05803F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296866 ID=CX296866; Name=CX296866; organism=Citrus clementina; type=EST; length=693bp
TCACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGATGGCT
AATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGATCTGA
GGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGC
CACTGTCTTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGC
GTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTA
CACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATT
TCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGG
GATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCG
TGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTT
ATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCT
GGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAA
GCAGTTCTTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGG
GGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGT
TCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCA
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