CX296866

Overview
NameCX296866
Unique NameCX296866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10434 contig Ccv1_Contig10434:5..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 55/168 (32.74%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 689
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE Y+ L P+ YRGA   I+ + + +  ++   +K W+ EL+  A P + I L G K DL   +        AV    AQ   E   L+    ++E S+KT  NV  +F A
Sbjct:   23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASKR--------AVEFQEAQAYAEDNSLL----FMETSAKTAMNVNEIFMA 177          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 48/165 (29.09%), Postives = 85/165 (51.52%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            K + +GD  VGKTC++  + S  +      T+  +F+   + ++G  V + +WDTAGQE +  +    YR A   I+A+ L  ++++E++   WI E++ Y A  V I+L+G K DL + +    +              L +  G  A +E S+K  +N++ VF
Sbjct:   19 KIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESI-PHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFE----------DACTLAEKYGLLAVLETSAKESKNIEEVF 172          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 50/165 (30.30%), Postives = 82/165 (49.70%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            K + +GD  VGK+CLL  +T N F  D   T+   F   +V VN   + L +WDTAGQE +  +    YRGA   +L + +  + +Y +++  W+ + ++   P   I+L+G K DL           G   ++  +     K  G   ++E S+KT +NV+  F
Sbjct:   10 KYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLT-TWLTDARNLTNPNTVIMLIGNKKDLE----------GQRDVTYEEASAFAKQNGL-IFVESSAKTGENVEEAF 162          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLR 542
            K V +GD  VGK+ LL  +T N F  +   T+   F+     V G  V   +WDTAGQE Y  +    YRGA   +L + +   A++EN + +W+ EL+ H  P + ++L+G K DLR
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAA-RWLRELRGHTDPNIVVMLIGNKCDLR 131          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 50/166 (30.12%), Postives = 86/166 (51.81%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 686
            K V +GD  VGK+ LL  Y  N F    + T+   FS   + ++   + L LWDTAGQE YN +    Y+GA   ++ +++  + S+ N+ +KW+ + +  A     I+LVG K DL++ ++          +ST +G++  +      +IE S+    NV+  F+
Sbjct:   13 KIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNL-EKWLKKFRENAHQDYGIMLVGNKSDLKEYRE----------VSTLEGKQFAEK-HYMQFIETSALDSNNVETAFN 166          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAPA_DISOM (Ras-related protein O-Krev OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D++           +   QG+ L +     A++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQPCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 48/172 (27.91%), Postives = 88/172 (51.16%), Query Frame = 3
Query:  174 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 683
            M+ +   K + +GD  VGK+CLL+ +T   F   +  T+   F A +V ++G  + L +WDTAGQE +  +    YRGA   +L + +  + ++ +++  W+ + + H +  + I+L+G K DL   +           +   +GE   +  G   ++E S+KT  NV+  F
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAKTACNVEEAF 160          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 51/183 (27.87%), Postives = 92/183 (50.27%), Query Frame = 3
Query:  144 KKPLS*KKIKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 686
            +KP    +   S     K + VGD AVGK+ LL+ +    F  +   T+   F S ++ +N   + L +WDTAGQE +  +    YRGA   ++ + +  + S+E+++  W+ + + ++   V  +L+G K DL  ++Q          +ST++ +E  +  G   + E S+KT  NV   F+
Sbjct:    9 EKPTFNDRKSTSYEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLN-SWLTDCRKFSSCDVTTVLIGNKADLEANRQ----------VSTSEAKEFAEKNGL-MFFETSAKTALNVDEAFE 179          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 44/127 (34.65%), Postives = 67/127 (52.76%), Query Frame = 3
Query:  174 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 551
            M+    IK V VGDG VGKT  +  + +  F   Y+PT+  +    +   N   ++  +WDTAGQE +  LR   Y   +  I+ F + S+ SY+NV   W  +L      +PI+L G K+D++D K
Sbjct:    1 MAEKEQIKLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIHFNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNV-PNWHSDLTRVCENIPIVLCGNKVDVKDRK 126          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RABN1_DICDI (Ras-related protein RabN1 OS=Dictyostelium discoideum GN=rabN1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 53/183 (28.96%), Postives = 89/183 (48.63%), Query Frame = 3
Query:  168 IKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL--KHYAPGV-------PIILVGTKLDL-RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 686
            ++  A++ +K + +GD   GKT +   +    F     P+ FD F   ++++   V    WDTAGQE +  L    YR A+  +L F + ++ S++N+  KWI EL  K    G+       P +L+GTK D+ R DK    +          +  E +++I    Y E S+K  +N+K  F+
Sbjct:    1 MEYKANKKLKIIMIGDYNSGKTAIFNEFAGRKFGIYTCPSTFDLFYKEIMIDDELVGYHFWDTAGQERFTSLNRHFYRNANCCVLCFDIHNEESFKNLD-KWITELHSKCLENGLESEKLSPPFVLIGTKSDIPRTDKSISNERIE----QWCKNIEDQRIIDKVHYFETSAKNSKNIKEPFN 178          
The following BLAST results are available for this feature:
BLAST of CX296866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5C_BOVIN2.094e-1432.74Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB19_HUMAN2.094e-1429.09Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RAB14_DICDI2.094e-1430.30Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
RAA1A_ARATH2.094e-1437.29Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11B_DICDI2.735e-1430.12Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RAPA_DISOM2.735e-1429.17Ras-related protein O-Krev OS=Discopyge ommata PE=... [more]
RAB2B_HUMAN2.735e-1427.91Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2B_DICDI2.735e-1427.87Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAN_DICDI3.572e-1434.65GTP-binding nuclear protein Ran OS=Dictyostelium d... [more]
RABN1_DICDI3.572e-1428.96Ras-related protein RabN1 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC05803F11SK FerrChloL1 Citrus clementina cDNA clone C05803F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296866 ID=CX296866; Name=CX296866; organism=Citrus clementina; type=EST; length=693bp
TCACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGATGGCT
AATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGATCTGA
GGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGC
CACTGTCTTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGC
GTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTA
CACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATT
TCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGG
GATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCG
TGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTT
ATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCT
GGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAA
GCAGTTCTTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGG
GGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGT
TCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCA
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