CX296866

Overview
NameCX296866
Unique NameCX296866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10434 contig Ccv1_Contig10434:5..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RACB_ENTHI (Rho-related protein racB (Fragment) OS=Entamoeba histolytica GN=RACB PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.619e-49
Identity = 93/163 (57.06%), Postives = 121/163 (74.23%), Query Frame = 3
Query:  210 GDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            G G VGKTCLL+SYT+N FPT+YVPTVFDN+SA V+V+   +NLGLWDTAGQEDY+R+RPLSY   DVF+L FS++S  S+EN+S KW PE+ H+ P  P +L+GTK+D+RD++            PI++ QGE   K IGA  YIECS+ TQ+N++ VFD A
Sbjct:    1 GAGGVGKTCLLVSYTTNAFPTEYVPTVFDNYSATVMVDSRPINLGLWDTAGQEDYDRIRPLSYPQTDVFLLCFSVVSPPSFENISSKWKPEVSHHCPNAPCLLIGTKIDIRDEQTQTNKTCDKKIEPITSEQGEAKCKDIGALKYIECSALTQKNLRYVFDEA 163          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHOJ_HUMAN (Rho-related GTP-binding protein RhoJ OS=Homo sapiens GN=RHOJ PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.420e-49
Identity = 92/171 (53.80%), Postives = 125/171 (73.10%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            + +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++  V V G    LGL+DTAGQEDYN+LRPLSY   DVF++ FS+++ ASY NV ++W+PELK   P VP +L+GT++DLRDD +    + +    P++   G +L K IGA  Y+ECS+ TQ+ +KAVFD A
Sbjct:   20 KMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEA 190          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: CDC42_MACFA (Cell division control protein 42 homolog OS=Macaca fascicularis GN=CDC42 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.420e-49
Identity = 92/169 (54.44%), Postives = 124/169 (73.37%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLLISYT+N FP++YVPTVF+N++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFNNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RACF2_DICDI (Rho-related protein racF2 OS=Dictyostelium discoideum GN=racF2 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.619e-49
Identity = 95/167 (56.89%), Postives = 125/167 (74.85%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 686
            IKCV VGDGAVGKTC+LISYT+N FP++Y+PTVFDN+ AN++++G   +LGLWDTAGQE+Y+RLRPLSY   DVF++ FS+IS++S+ENVS KW  E+ H+APGVPI+LVGTK D+R+D      +       +   +G E  K I A  Y+E S+ TQ+ VK VFD
Sbjct:    4 IKCVVVGDGAVGKTCMLISYTTNGFPSEYLPTVFDNYCANLMLDGKPYSLGLWDTAGQEEYDRLRPLSYPQTDVFLICFSIISQSSFENVSTKWFKEVNHHAPGVPIVLVGTKQDIRNDNDSIKKLKERNIELVPYEKGLEKAKEINA-IYLEASALTQRGVKNVFD 169          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RACA_DICDI (Rho-related protein racA OS=Dictyostelium discoideum GN=racA PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.300e-48
Identity = 92/167 (55.09%), Postives = 122/167 (73.05%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IK V VGDGAVGK+CLLI+YT+N FP +YVPTVFDN+SANV+++G   NLGLWDTAGQEDY+RLRPLSY   DVF++ FS++S+AS+EN+  KW PE+ H+AP +PI+LVGTK DLR      +  P    +S A+   L + +G   Y+E S+  Q N++ +F  A
Sbjct:    4 IKLVVVGDGAVGKSCLLIAYTTNAFPGEYVPTVFDNYSANVMIDGKPFNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSRASFENIRAKWYPEILHHAPNIPIVLVGTKNDLRGHHD--LKRP---EVSAAEANNLVRELGFSGYVETSALLQTNLRELFSLA 165          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RACD_ENTHI (Rho-related protein racD (Fragment) OS=Entamoeba histolytica GN=RACD PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.217e-48
Identity = 91/172 (52.91%), Postives = 122/172 (70.93%), Query Frame = 3
Query:  183 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            ++ +K V VGDG+VGKTCLLI YT+N FP DYVPTVFDN+ A + V+G  +NLGLWDTAGQED  +LRPLSY   D+F+L FS+IS+ S+ N+S KW+PE+KHY P   +++VGT  D R+D+     +      PI+T +GE+L K I A  Y+ECS+ T+  +  VFD A
Sbjct:    6 AKSVKLVVVGDGSVGKTCLLICYTTNEFPKDYVPTVFDNYMAPMTVDGEPINLGLWDTAGQEDSEQLRPLSYPNTDLFLLCFSVISRTSFNNISSKWLPEIKHYEPKCKMMVVGTNTDCRNDEAMIRKLADENQKPITTEEGEKLAKDIKAICYMECSALTRSGLNQVFDEA 177          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RAC2_CAEEL (Ras-related protein rac-2 OS=Caenorhabditis elegans GN=rac-2 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.451e-47
Identity = 92/169 (54.44%), Postives = 119/169 (70.41%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IKCV VGDGAVGKTCLL+SYT+N FP +Y+ TVFD +S NV+V+G  +NL LWDTAGQ+DY++ R LS+   DVF++ F+L + AS+ENV  KW PE+ H+ P  PIILVGTK DLR+D+     +      P+S  QG  + K I A  Y+ECS+ TQ  +K VFD A
Sbjct:    4 IKCVVVGDGAVGKTCLLLSYTTNAFPGEYILTVFDTYSTNVMVDGRPINLSLWDTAGQDDYDQFRHLSFPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLREDRDTIERLRERRLQPVSHTQGYVMAKEIKAVKYLECSALTQIGLKQVFDEA 172          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHOU_HUMAN (Rho-related GTP-binding protein RhoU OS=Homo sapiens GN=RHOU PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.539e-46
Identity = 90/171 (52.63%), Postives = 125/171 (73.10%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            R +KCV VGDGAVGKT L++SYT+N +PT+Y+PT FDNFSA V V+G  V L L DTAGQ+++++LRPL Y   D+F+L FS++S +S++NVS+KW+PE++ + P  PIILVGT+ DLR+D +  I  D     P+     +   + I A +YIECS+ TQ+N+K VFDAA
Sbjct:   48 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAA 218          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RACH_DICDI (Rho-related protein racH OS=Dictyostelium discoideum GN=racH PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.622e-46
Identity = 95/168 (56.55%), Postives = 118/168 (70.24%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV-PIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            IK + VGD +VGKTCLLISYT+N+FP +YVPTVFDN++AN +VN + +NLGLWDTAG E+YN  RPLSY G DVFI+ FSLIS+ S+ENV KKW PE+      V PIILVGTKLDLR   +          ++   GE++R  IGA  Y ECS+ TQ  +  VF+ A
Sbjct:    5 IKVMVVGDMSVGKTCLLISYTTNSFPGEYVPTVFDNYNANAIVNNTPINLGLWDTAGSEEYNSFRPLSYPGTDVFIICFSLISQTSFENVIKKWHPEIIQNMEQVPPIILVGTKLDLRGKGK-----SEEKEVTPEMGEQMRAAIGAYKYSECSALTQDGLTTVFEEA 167          
BLAST of CX296866 vs. ExPASy Swiss-Prot
Match: RHOU_BOVIN (Rho-related GTP-binding protein RhoU OS=Bos taurus GN=RHOU PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.885e-46
Identity = 89/169 (52.66%), Postives = 123/169 (72.78%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 692
            +KCV VGDGAVGKT L++SYT+N +PT+Y+PT FDNFSA V V+G  V L L DTAGQ+++++LRPL Y  AD+F+L FS++  +S++NVS+KW+PE++ + P  PIILVGT+ DLR+D +  I  D     P+         + I A +YIECS+ TQ+N+K VFDAA
Sbjct:   47 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVKLQLCDTAGQDEFDKLRPLCYTNADIFLLCFSVVGPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAARLCAEEIKATSYIECSALTQKNLKEVFDAA 215          
The following BLAST results are available for this feature:
BLAST of CX296866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RACB_ENTHI2.619e-4957.06Rho-related protein racB (Fragment) OS=Entamoeba h... [more]
RHOJ_HUMAN3.420e-4953.80Rho-related GTP-binding protein RhoJ OS=Homo sapie... [more]
CDC42_MACFA3.420e-4954.44Cell division control protein 42 homolog OS=Macaca... [more]
RACF2_DICDI7.619e-4956.89Rho-related protein racF2 OS=Dictyostelium discoid... [more]
RACA_DICDI1.300e-4855.09Rho-related protein racA OS=Dictyostelium discoide... [more]
RACD_ENTHI2.217e-4852.91Rho-related protein racD (Fragment) OS=Entamoeba h... [more]
RAC2_CAEEL2.451e-4754.44Ras-related protein rac-2 OS=Caenorhabditis elegan... [more]
RHOU_HUMAN3.539e-4652.63Rho-related GTP-binding protein RhoU OS=Homo sapie... [more]
RACH_DICDI4.622e-4656.55Rho-related protein racH OS=Dictyostelium discoide... [more]
RHOU_BOVIN7.885e-4652.66Rho-related GTP-binding protein RhoU OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionC05803F11SK FerrChloL1 Citrus clementina cDNA clone C05803F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296866 ID=CX296866; Name=CX296866; organism=Citrus clementina; type=EST; length=693bp
TCACGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGATGGCT
AATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGATCTGA
GGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAGC
CACTGTCTTAAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGC
GTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTA
CACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATT
TCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGG
GATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCG
TGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTT
ATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCT
GGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAA
GCAGTTCTTCATTGACCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGG
GGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGT
TCAAAAACACAGCAGAATGTGAAGGCAGTATTTGATGCAGCCA
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