CX296869

Overview
NameCX296869
Unique NameCX296869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: CCR12_ARATH (Serine/threonine-protein kinase-like protein At1g28390 OS=Arabidopsis thaliana GN=At1g28390 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 52/167 (31.14%), Postives = 93/167 (55.69%), Query Frame = 3
Query:   51 IVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLT-------SCLPNGVLLKVESAIKNGSFADILDKSITDWP-LAETEELACIALKCSNLRCRDRPDLDTEVMPVLRKLKDVADACVKL 527
            ++HRD+K  N+L+D +  +++ D GLA LI + + D   +Y  T  AGTL Y+DP Y     +  KSD+++FG+++L++++       +  P+ ++      IK G +  I D  I + P  A   +LA +A +C     + RPD+  EV+  L+ ++ ++ A  KL
Sbjct:  182 VIHRDIKSCNVLIDGDGNARLADFGLA-LIGN-VDDERLKY--TPPAGTLGYLDPSYLAPADLTAKSDVFSFGILLLEIISGREAIDLNYSPSCIVDWAVPLIKRGDYDAICDLKIKNRPYYAVIRKLAVMAARCVRSTAKKRPDM-LEVVECLKTVRQLSPAWNKL 343          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 49/153 (32.03%), Postives = 78/153 (50.98%), Query Frame = 3
Query:   30 HNS*PEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQ------LLTSCLPNGVLLKVESA---IKNGSFADILDKSIT-DWPLAETEELACIALKCSNLRCRDRP 458
            H      I+HRD+K  NILLD N+++K+ D GL+K      PD    +  T + G+  Y+DPEY     +  KSD+Y+FGV++L+      ++   LP   +  +E A   +K G   DI+D  +     L E ++   +  KC +    +RP
Sbjct:  601 HTGSTRAIIHRDVKSANILLDDNFMAKVADFGLSK----TGPDLDQTHVSTAVKGSFGYLDPEYLTRQQLTEKSDVYSFGVVMLEVVCGRPVIDPSLPREKVNLIEWAMKLVKKGKLEDIIDPFLVGKVKLEEVKKYCEVTEKCLSQNGIERP 749          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: CRK5_ARATH (Cysteine-rich receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=CRK5 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 53/155 (34.19%), Postives = 78/155 (50.32%), Query Frame = 3
Query:   51 IVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTSCLPNGVLLKVESAIKN-----------GSFADILDKSITDWPLAETEELAC--IALKCSNLRCRDRPDLDTEV 476
            I+HRDLK GNILLD +   K+ D G+A++       + TE     + GT  YM PEY   G    KSD+Y+FGV++L+++ S   N  L +++++  N           GS  D++D S  D      E + C  IAL C      +RP +   V
Sbjct:  461 IIHRDLKAGNILLDADMNPKVADFGMARIFEI----DQTEAHTRRVVGTYGYMSPEYAMYGQFSMKSDVYSFGVLVLEII-SGRKNSSLYQMDASFGNLVTYTWRLWSDGSPLDLVDSSFRD-SYQRNEIIRCIHIALLCVQEDTENRPTMSAIV 609          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 51/168 (30.36%), Postives = 90/168 (53.57%), Query Frame = 3
Query:   33 NS*PEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTS--CLPNGVLLKVESAI---------KNGSFADILDKSITDWPLAETEELACIALKCSNLRCRDRPDLDTEVMPVLRKLKD 503
            +S P  +++RD+K  NILLD +Y +K+ D GLA+   D  P     Y  T + GT  Y  PEY  +G +  +SD+Y+FGV++L++L+    L +    K E+ +         K      + ++  T +   E   +A +A++C +   + RP +D +V+  L++L+D
Sbjct:  192 HSDPVKVIYRDIKASNILLDADYNAKLSDFGLAR---DG-PMGDLSYVSTRVMGTYGYAAPEYMSSGHLNARSDVYSFGVLLLEILSGKRALDHNRPAKEENLVDWARPYLTSKRKVLLIVDNRLDTQYLPEEAVRMASVAVQCLSFEPKSRPTMD-QVVRALQQLQD 354          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: WAKLF_ARATH (Wall-associated receptor kinase-like 6 OS=Arabidopsis thaliana GN=WAKL6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 3
Query:   30 HNS*PEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTSCLP 305
            H++   PI HRD+K  NILLD  Y +K+ D G ++ I+ A       +  T++AGT  YMDPEY  +     KSD+Y+FGV++++L+T   P
Sbjct:  548 HSAASIPIYHRDIKTTNILLDEKYRAKVSDFGTSRSITIA-----QTHLTTLVAGTFGYMDPEYFLSSQYTDKSDVYSFGVVLVELITGEKP 634          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: PSKR1_ARATH (Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 50/139 (35.97%), Postives = 70/139 (50.36%), Query Frame = 3
Query:   51 IVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTS------CLPNG--------VLLKVESAIKNGSFADILDKSITDWPLAETEELACIAL 425
            I+HRD+K  NILLD N+ S + D GLA+L+S         +  T L GTL Y+ PEY +      K D+Y+FGV++L+LLT       C P G        V +K ES      F  ++     D  +    E+AC+ L
Sbjct:  856 ILHRDIKSSNILLDENFNSHLADFGLARLMSP-----YETHVSTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTDKRPVDMCKPKGCRDLISWVVKMKHESRASE-VFDPLIYSKENDKEMFRVLEIACLCL 988          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.363e-13
Identity = 50/163 (30.67%), Postives = 79/163 (48.47%), Query Frame = 3
Query:   30 HNS*PEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTSCLPNGVLLKVESAIKNGSFADILDKSITDWPLAETEELACIALKCSNLRCRDRPDLDTEVMPVLRKLKDVADAC 518
            H+    PIVHRD+K  NILLD +Y +K+ D G+AK+    +  + T    + +AG+  Y+ PEY  T  +  KSD+Y+FGV++L+L+T               K  + +++ DK +  W         C AL    L     P LD +    + K+  +   C
Sbjct:  808 HHDCVPPIVHRDVKSSNILLDSDYGAKVADFGIAKV--GQMSGSKTPEAMSGIAGSCGYIAPEYVYTLRVNEKSDIYSFGVVLLELVTG--------------KQPTDSELGDKDMAKW--------VCTALDKCGLEPVIDPKLDLKFKEEISKVIHIGLLC 946          

HSP 2 Score: 21.557 bits (44), Expect = 6.363e-13
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = 2
Query:  542 LCTKPLLLSNPSGEK 586
            LCT PL L+ PS  K
Sbjct:  945 LCTSPLPLNRPSMRK 959          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 50/164 (30.49%), Postives = 86/164 (52.44%), Query Frame = 3
Query:   30 HNS*PEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLT---------SCLPNGVLLK-VESAIKNGSFADILDKSI-TDWPLAETEELACIALKCSNLRCRDRPDLDTEVMPVL 488
            H      I+HRD+K  NILLD  + + +GD GLAKL+     ++   +  T + GT+ ++ PEY  TG    K+D++ FG+++L+L+T         S    G +L+ V    K     +++D+ + T +   E  E+  +AL C+      RP + +EV+ +L
Sbjct:  411 HEQCDPKIIHRDVKAANILLDEYFEAVVGDFGLAKLL-----NHEDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSVSQKGAMLEWVRKLHKEMKVEELVDRELGTTYDRIEVGEMLQVALLCTQFLPAHRPKM-SEVVQML 568          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 54/159 (33.96%), Postives = 77/159 (48.43%), Query Frame = 3
Query:   51 IVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTS---------CLPNGVLLKVESAIKNGSFADILDKSITDWPLAE------TEELAC--IALKCSNLRCRDRPDLDTEV 476
            I+HRDLK  NILLD+N + KI D G+A++       + TE     + GT  YM PEY   G    KSD+++FGVI+L++++             N +L  V S  K G   +I+D  I D   ++       E L C  I L C       RP + + V
Sbjct:  649 IIHRDLKVSNILLDKNMIPKISDFGMARIFE----RDETEANTMKVVGTYGYMSPEYAMYGIFSEKSDVFSFGVIVLEIVSGKKNRGFYNLDYENDLLSYVWSRWKEGRALEIVDPVIVDSLSSQPSIFQPQEVLKCIQIGLLCVQELAEHRPAMSSVV 803          
BLAST of CX296869 vs. ExPASy Swiss-Prot
Match: PTI1_SOLLC (Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 52/152 (34.21%), Postives = 73/152 (48.03%), Query Frame = 3
Query:   51 IVHRDLKPGNILLDRNYVSKIGDVGLAKLISDAIPDNITEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTS------CLPNGVLLKVESA---IKNGSFADILDKSI-TDWPLAETEELACIALKCSNLRCRDRPDLDTEV 476
            I+HRD+K  NILL  + V+KI D  L    S+  PD       T + GT  Y  PEY  TG +  KSD+Y+FGV++L+LLT        LP G    V  A   +        +D  + TD+P     ++A +A  C       RP++   V
Sbjct:  194 IIHRDIKSSNILLFDDDVAKIADFDL----SNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVKQCVDARLNTDYPPKAIAKMAAVAALCVQYEADFRPNMSIVV 341          
The following BLAST results are available for this feature:
BLAST of CX296869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
CCR12_ARATH3.526e-1331.14Serine/threonine-protein kinase-like protein At1g2... [more]
Y2393_ARATH4.605e-1332.03Probable receptor-like protein kinase At2g39360 OS... [more]
CRK5_ARATH4.605e-1334.19Cysteine-rich receptor-like protein kinase 5 OS=Ar... [more]
BIK1_ARATH4.605e-1330.36Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
WAKLF_ARATH6.015e-1341.30Wall-associated receptor kinase-like 6 OS=Arabidop... [more]
PSKR1_ARATH6.015e-1335.97Phytosulfokine receptor 1 OS=Arabidopsis thaliana ... [more]
RLK5_ARATH6.363e-1330.67Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]
Y2239_ARATH7.855e-1330.49Probable LRR receptor-like serine/threonine-protei... [more]
SRK6_BRAOE7.855e-1333.96Putative serine/threonine-protein kinase receptor ... [more]
PTI1_SOLLC7.855e-1334.21Pto-interacting protein 1 OS=Solanum lycopersicum ... [more]

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Properties
Property NameValue
Genbank descriptionC05803G02SK FerrChloL1 Citrus clementina cDNA clone C05803G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296869 ID=CX296869; Name=CX296869; organism=Citrus clementina; type=EST; length=755bp
CGAGGCCTCCTGCCGAATTCGGCACGAGGCACAACTCATAGCCAGAGCCT
ATTGTGCATCGAGACTTGAAACCGGGAAACATCTTGTTAGACAGAAATTA
TGTGAGCAAAATTGGGGATGTTGGGCTGGCTAAACTCATTTCAGATGCCA
TACCTGACAACATCACAGAGTACAGAGAGACCATTCTTGCTGGTACTCTT
CATTACATGGACCCAGAATATCACAGAACCGGCACTATTCGTCCCAAATC
TGATCTATATGCATTTGGAGTTATTATACTCCAGTTATTGACATCTTGCC
TTCCGAATGGAGTTCTACTGAAAGTTGAAAGTGCCATTAAGAATGGTTCC
TTTGCTGACATTTTAGACAAGTCAATAACAGATTGGCCGCTTGCTGAAAC
AGAGGAATTAGCTTGCATTGCATTAAAGTGTTCAAATCTTAGATGCAGAG
ATAGACCTGATCTTGATACCGAAGTCATGCCGGTTCTCAGGAAACTCAAG
GATGTTGCAGATGCTTGTGTAAAGTTGGAAAGCAGCAATGTTTATGCACC
AAGCCACTTCTTCTGTCCAATCCTTCAGGTGAAAAGTCACAGTCAATTAC
AGAAACGTGATTTACAAGTTACATTTTCCATATTAGCTTGCATCTCATAT
AGATTTTTCTATTTGCTTCATCTTGGATAAATATAGGAAGTCATGGAAGA
TCCATACATTGCTGCTGATGGATTTACTTATGAGCATAGAGCAATCAAGG
CATGG
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