CX296871

Overview
NameCX296871
Unique NameCX296871
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3029 contig Ccv1_Contig3029:823..1568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296871 vs. ExPASy Swiss-Prot
Match: C71D9_SOYBN (Cytochrome P450 71D9 OS=Glycine max GN=CYP71D9 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 56/231 (24.24%), Postives = 107/231 (46.32%), Query Frame = 3
Query:   60 RKVCVLKMLSNTTLDSVYALRRRQLRETVGYIYTRAGSTVGVGEQLFLTILNVITNMLWGGAVQGDDRASIGAEFRQVVSEMTELLGTPNVSDFFPGLARFD-LQGLVKKSRALKNKFDKMFDLMIDQ-RLKMDRECGKESKDFLQFLLQLKDEADSKTPLTMIHVKALLMDMVVGGSDTTSNSTEFAMAEMMNKPEGIKRAQQELDEVVGRDNIVEESHIYKLPYLFAVM 746
            RK+  L++LS+  + S   +R   L   +  + T  GS V V +++  T+  +      G   +   +         VV+E  ++ G  ++ D +P +     + GL  K   L  + D++   +I++ R       G + ++ +   + LK E      L+   +KA++ D+  GGSDT+S +  +AMAEM+  P  +++ Q E+  V  ++     S    L YL +V+
Sbjct:  133 RKIFALELLSSKRVQSFQPIREEVLTSFIKRMATIEGSQVNVTKEVISTVFTITARTALGSKSRHHQKLI------SVVTEAAKISGGFDLGDLYPSVKFLQHMSGLKPKLEKLHQQADQIMQNIINEHREAKSSATGDQGEEEVLLDVLLKKEFG----LSDESIKAVIWDIFGGGSDTSSATITWAMAEMIKNPRTMEKVQTEVRRVFDKEGRPNGSGTENLKYLKSVV 353          
BLAST of CX296871 vs. ExPASy Swiss-Prot
Match: C71BO_ARATH (Cytochrome P450 71B24 OS=Arabidopsis thaliana GN=CYP71B24 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 65/239 (27.20%), Postives = 114/239 (47.70%), Query Frame = 3
Query:   60 RKVCVLKMLSNTTLDSVYALRRRQLRETVGYIYTRA--GSTVGVGEQLFLTILNVITNMLWGGAVQGDDRASIGAEFRQVVSEMTELLGTPNVSDFFPG-LARFD--LQGLVKKSRALKNKFDKMFDLMIDQRLKMD-RECGKESKDFLQFLLQL--KDEADSKTPLTMIHVKALLMDMVVGGSDTTSNSTEFAMAEMMNKPEGIKRAQQELDEVVG--RDNIVEESHIYKLPYLFAVM 746
            RK+  LK  S T + S   +R  +    V  +   A   S+V + + LF  + ++I    +G     D+   + AE  + +    + LG  + SD FPG L  F   + G  KK   +  + D + + +ID  LK    E   +  D +  LL +  K E      LT+ ++K ++ D+ + G DT++ +  +AMAE++  P  +K+ Q E+   +G  ++  +EE  + KL YL  V+
Sbjct:  122 RKLSFLKFFSTTKVRSFRYIREEENDLMVKKLKEAALKKSSVDLSQTLFGLVGSIIFRSAFGQRF--DEGNHVNAEKIEDLMFEVQKLGALSNSDLFPGGLGWFVDFVSGHNKKLHKVFVEVDTLLNHIIDDHLKNSIEEITHDRPDIIDSLLDMIRKQEQGDSFKLTIDNLKGIIQDIYLAGVDTSAITMIWAMAELVKNPRVMKKVQDEIRTCIGIKQNEKIEEDDVDKLQYLKLVV 358          
The following BLAST results are available for this feature:
BLAST of CX296871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
C71D9_SOYBN9.392e-1124.24Cytochrome P450 71D9 OS=Glycine max GN=CYP71D9 PE=... [more]
C71BO_ARATH9.392e-1127.20Cytochrome P450 71B24 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC05803G04SK FerrChloL1 Citrus clementina cDNA clone C05803G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296871 ID=CX296871; Name=CX296871; organism=Citrus clementina; type=EST; length=746bp
GAAGCCTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACCA
GGCGGCACGAGGAAAGTCTGTGTGCTCAAGATGCTCAGTAATACCACGTT
AGACTCCGTCTACGCGCTCCGTCGCCGTCAGCTCCGTGAGACTGTAGGTT
ATATTTACACTCGGGCCGGGTCAACCGTTGGCGTCGGTGAGCAACTGTTT
TTAACGATATTGAATGTGATAACGAACATGTTGTGGGGAGGCGCAGTGCA
AGGCGATGACAGGGCCAGCATTGGTGCGGAGTTTAGGCAAGTGGTGTCGG
AAATGACGGAGCTGTTGGGTACGCCCAATGTATCGGATTTCTTTCCCGGG
TTGGCCCGGTTCGACTTGCAAGGTTTGGTGAAGAAGTCGCGTGCGTTGAA
AAACAAGTTTGATAAGATGTTTGACCTGATGATTGATCAACGTCTGAAGA
TGGATAGAGAATGTGGGAAAGAGAGTAAAGATTTTCTGCAATTTCTGTTA
CAATTGAAGGATGAAGCTGATTCCAAGACACCTTTGACCATGATTCATGT
CAAAGCTCTGCTTATGGATATGGTGGTTGGTGGGTCAGATACAACCTCCA
ACTCAACTGAATTCGCCATGGCTGAAATGATGAACAAACCAGAAGGTATC
AAAAGAGCCCAGCAAGAATTGGACGAAGTTGTTGGCAGAGACAACATAGT
AGAAGAGTCCCACATTTACAAACTGCCATATCTATTTGCTGTAATG
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