CX296875
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 1.062e-46 Identity = 102/210 (48.57%), Postives = 142/210 (67.62%), Query Frame = -2 Query: 61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 687 Y++L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGYL+KILT +LP +F ILR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT AF K+R+++F H K+ G LYGL Sbjct: 62 YQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.812e-46 Identity = 101/210 (48.10%), Postives = 142/210 (67.62%), Query Frame = -2 Query: 61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 687 Y++L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL GI F+++ +EG++++ FAEL+M+SG+V E V W++FHS YDFGYL+KIL+ LP +F ILR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT AF K+R+++F H K+ G LYGL Sbjct: 62 YQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFF-PIIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 4.036e-46 Identity = 98/210 (46.67%), Postives = 146/210 (69.52%), Query Frame = -2 Query: 61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHD-GPEKHAGVLYGL 687 Y++L+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DSI+LL G+ F+++ +EG+D++ FAEL+M+SG+V ++V W++FHS YDFGY+VK+LT LP EF IL +FF +IYDVK++M+ C++L GGL VA LD+ R +G+ HQAGSDSLLT AF ++++++F K+ G LYGL Sbjct: 62 YQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 4.036e-46 Identity = 98/210 (46.67%), Postives = 146/210 (69.52%), Query Frame = -2 Query: 61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHD-GPEKHAGVLYGL 687 Y++L+ NVD L +IQ+GLT ++ G P SG N W+FNF+ F++ D ++ DSI+LL G+ F+++ +EG+D++ FAEL+M+SG+V ++V W++FHS YDFGY+VK+LT LP EF IL +FF +IYDVK++M+ C++L GGL VA LD+ R +G+ HQAGSDSLLT AF ++++++F K+ G LYGL Sbjct: 62 YQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 4.036e-46 Identity = 102/210 (48.57%), Postives = 141/210 (67.14%), Query Frame = -2 Query: 61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 687 Y++L+ NVD L +IQ+GLT + G P S W+FNF+ F++ D +A DSIELL GI F+++ +EG+++ FAEL M+SG+V E V W++FHS YDFGYL+KILT +LP +F ILR+FF IYDVK++M+ C++L GGL VA L++ R +G HQAGSDSLLT AF K+R+++F H K+ G LYGL Sbjct: 62 YQLLRCNVDLLKIIQLGLTFVNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELKR-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 5.455e-43 Identity = 97/216 (44.91%), Postives = 136/216 (62.96%), Query Frame = -2 Query: 61 KPSD--HYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGL 702 K SD HY+ L++NVD+L +IQ+GL LSD GN P W+FNF F++ D +AP+SIELL GIDF+++++ G++ FAEL++ SGLV E V+W+TFHS YDF YL+K +T+ LP+ +EF IL ++F N YD+K+IM+ + GL +A L + R +G HQAGSD+LLT F +IR YF + LYGL Sbjct: 65 KSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPV------EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKN-YDIKYIMKSVLNNSKGLQDIADDLQIHR-IGPQHQAGSDALLTARIFFEIRSRYFDGSIDSRMLNQLYGL 271
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.377e-30 Identity = 81/203 (39.90%), Postives = 115/203 (56.65%), Query Frame = -2 Query: 106 KPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRF--CQS--LYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYF 702 K +Y+ + NV+ L LIQVG + + G LP G +W+FNF +F A D + +S+E+LR GIDF + G+ + F EL+ +SGL+ + ++W+TF S YDFGYL+K +T LP F + F + +D+K ++R C S L GGL VA LDV R G HQAGSD+LLT F KI+ +F Sbjct: 68 KEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGD------VWQFNF-NFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTS-FDIKILLRTPNCASAKLKGGLQEVADQLDVKRQ-GVRHQAGSDALLTAATFFKIKKQFF 261
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28 Identity = 61/151 (40.40%), Postives = 100/151 (66.23%), Query Frame = -2 Query: 238 HYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQ 690 HY+ +++NVD LN IQ+GL+LSD++GN PD N W+FNF +FD + + +S+ELLR GI+FE++ G+D F++L+M SGL+ ++SV+W+T+H+AYD G+L+ IL S+P+ ++F + + N YD+ + + Q Sbjct: 209 HYQTMRANVDFLNPIQLGLSLSDANGNKPD-----NGPSTWQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYM-PNFYDLNLVYKIIQ 352
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.640e-26 Identity = 77/212 (36.32%), Postives = 113/212 (53.30%), Query Frame = -2 Query: 61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAEL-MMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSL--YGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGL 687 Y+ +K NV+ LIQ G TL ++ G + GG +WE NF +F +D SIE LR G+D ++ R EGVD + + + + V +VTF AYDF Y + IL LP EF T + FG +YD K + FC+ L + GL ++A+ L ++R VG+ H AGSDSL+T F K++ VY + G++YG+ Sbjct: 57 YRAMKGNVENTKLIQCGFTLFNAKGEI-----GG----VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFG-QVYDTKVMAGFCEGLGEHLGLSKLAQLLQITR-VGRAHHAGSDSLMTALVFIKLKHVY---EDSRFARGLIYGI 254
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.801e-23 Identity = 73/194 (37.63%), Postives = 97/194 (50.00%), Query Frame = -2 Query: 121 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNES---VSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 687 Y+ +K NVD +LIQ+GLTL G G WE N DF+ + SI L+ G+D ++ R+EG+ E M + NE + WVTF +YD YL+K LTR+ LP EF ++ G +YDVK + C L GL R+A L + R VGK H AGSDS LT F K+ Sbjct: 50 YRDMKFNVDNTHLIQLGLTL---------FGKGITKT--WEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQM-RRVGKAHHAGSDSELTARVFTKL 228 The following BLAST results are available for this feature:
BLAST of CX296875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296875 ID=CX296875; Name=CX296875; organism=Citrus clementina; type=EST; length=745bpback to top |