CX296875

Overview
NameCX296875
Unique NameCX296875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13299 contig Ccv1_Contig13299:531..1275. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.062e-46
Identity = 102/210 (48.57%), Postives = 142/210 (67.62%), Query Frame = -2
Query:   61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 687
            Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  ILR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F  H    K+ G LYGL
Sbjct:   62 YQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.812e-46
Identity = 101/210 (48.10%), Postives = 142/210 (67.62%), Query Frame = -2
Query:   61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 687
            Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG++++ FAEL+M+SG+V  E V W++FHS YDFGYL+KIL+   LP    +F  ILR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F  H    K+ G LYGL
Sbjct:   62 YQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFF-PIIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.036e-46
Identity = 98/210 (46.67%), Postives = 146/210 (69.52%), Query Frame = -2
Query:   61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHD-GPEKHAGVLYGL 687
            Y++L+ NVD L +IQ+GLT ++  G  P   SG N    W+FNF+ F++  D ++ DSI+LL   G+ F+++ +EG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  IL +FF  +IYDVK++M+ C++L GGL  VA  LD+ R +G+ HQAGSDSLLT  AF ++++++F       K+ G LYGL
Sbjct:   62 YQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.036e-46
Identity = 98/210 (46.67%), Postives = 146/210 (69.52%), Query Frame = -2
Query:   61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHD-GPEKHAGVLYGL 687
            Y++L+ NVD L +IQ+GLT ++  G  P   SG N    W+FNF+ F++  D ++ DSI+LL   G+ F+++ +EG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  IL +FF  +IYDVK++M+ C++L GGL  VA  LD+ R +G+ HQAGSDSLLT  AF ++++++F       K+ G LYGL
Sbjct:   62 YQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.036e-46
Identity = 102/210 (48.57%), Postives = 141/210 (67.14%), Query Frame = -2
Query:   61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFV-HDGPEKHAGVLYGL 687
            Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ +EG+++  FAEL M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  ILR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F  H    K+ G LYGL
Sbjct:   62 YQLLRCNVDLLKIIQLGLTFVNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELKR-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.455e-43
Identity = 97/216 (44.91%), Postives = 136/216 (62.96%), Query Frame = -2
Query:   61 KPSD--HYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGL 702
            K SD  HY+ L++NVD+L +IQ+GL LSD  GN P           W+FNF  F++  D +AP+SIELL   GIDF+++++ G++   FAEL++ SGLV  E V+W+TFHS YDF YL+K +T+  LP+  +EF  IL ++F  N YD+K+IM+   +   GL  +A  L + R +G  HQAGSD+LLT   F +IR  YF      +    LYGL
Sbjct:   65 KSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPV------EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKN-YDIKYIMKSVLNNSKGLQDIADDLQIHR-IGPQHQAGSDALLTARIFFEIRSRYFDGSIDSRMLNQLYGL 271          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.377e-30
Identity = 81/203 (39.90%), Postives = 115/203 (56.65%), Query Frame = -2
Query:  106 KPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRF--CQS--LYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYF 702
            K   +Y+ +  NV+ L LIQVG  + +  G LP  G       +W+FNF +F  A D  + +S+E+LR  GIDF   +  G+ +  F EL+ +SGL+ +  ++W+TF S YDFGYL+K +T   LP     F    +  F  + +D+K ++R   C S  L GGL  VA  LDV R  G  HQAGSD+LLT   F KI+  +F
Sbjct:   68 KEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGD------VWQFNF-NFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTS-FDIKILLRTPNCASAKLKGGLQEVADQLDVKRQ-GVRHQAGSDALLTAATFFKIKKQFF 261          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28
Identity = 61/151 (40.40%), Postives = 100/151 (66.23%), Query Frame = -2
Query:  238 HYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQ 690
            HY+ +++NVD LN IQ+GL+LSD++GN PD     N    W+FNF +FD   +  + +S+ELLR  GI+FE++   G+D   F++L+M SGL+ ++SV+W+T+H+AYD G+L+ IL   S+P+  ++F   +  +   N YD+  + +  Q
Sbjct:  209 HYQTMRANVDFLNPIQLGLSLSDANGNKPD-----NGPSTWQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYM-PNFYDLNLVYKIIQ 352          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.640e-26
Identity = 77/212 (36.32%), Postives = 113/212 (53.30%), Query Frame = -2
Query:   61 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAEL-MMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSL--YGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYFVHDGPEKHAGVLYGL 687
            Y+ +K NV+   LIQ G TL ++ G +     GG    +WE NF +F   +D     SIE LR  G+D ++ R EGVD   +     + +     + V +VTF  AYDF Y + IL    LP    EF T +   FG  +YD K +  FC+ L  + GL ++A+ L ++R VG+ H AGSDSL+T   F K++ VY   +      G++YG+
Sbjct:   57 YRAMKGNVENTKLIQCGFTLFNAKGEI-----GG----VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFG-QVYDTKVMAGFCEGLGEHLGLSKLAQLLQITR-VGRAHHAGSDSLMTALVFIKLKHVY---EDSRFARGLIYGI 254          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.801e-23
Identity = 73/194 (37.63%), Postives = 97/194 (50.00%), Query Frame = -2
Query:  121 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNES---VSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 687
            Y+ +K NVD  +LIQ+GLTL          G G      WE N  DF+ +       SI  L+  G+D ++ R+EG+      E  M    + NE    + WVTF  +YD  YL+K LTR+ LP    EF   ++   G  +YDVK +   C  L    GL R+A  L + R VGK H AGSDS LT   F K+
Sbjct:   50 YRDMKFNVDNTHLIQLGLTL---------FGKGITKT--WEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQM-RRVGKAHHAGSDSELTARVFTKL 228          
The following BLAST results are available for this feature:
BLAST of CX296875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CNOT7_BOVIN1.062e-4648.57CCR4-NOT transcription complex subunit 7 OS=Bos ta... [more]
CNOT7_DANRE1.812e-4648.10CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]
CNOT8_MOUSE4.036e-4646.67CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN4.036e-4646.67CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
CNOT7_XENTR4.036e-4648.57CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CAF1_SCHPO5.455e-4344.91Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT7_CAEEL2.377e-3039.90CCR4-NOT transcription complex subunit 7 OS=Caenor... [more]
POP2_YEAST2.225e-2840.40Poly(A) ribonuclease POP2 OS=Saccharomyces cerevis... [more]
CAF1A_ARATH4.640e-2636.32Probable CCR4-associated factor 1 homolog 1 OS=Ara... [more]
CAF1E_ARATH4.801e-2337.63Probable CCR4-associated factor 1 homolog 5 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803G08SK FerrChloL1 Citrus clementina cDNA clone C05803G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296875 ID=CX296875; Name=CX296875; organism=Citrus clementina; type=EST; length=745bp
GATTCGGCCGAGGCCTCGTGCCGAATTCGGCACGAGGCAAAATTAAATTT
AGTACACTTCTAGTCCATACAATACGCCGGCATGTTTCTCCGGTCCGTCA
TGGACGAAATACACATCCCTAATTTTTTGAAAGGCATGCCAGGTCAGAAG
GCTATCCGAACCGGCCTGGTGGCACTTCCCGACCGCCCGGCTCACATCCA
ACGTCCGAGCCACTCGGTCCAAACCACCGTACAAGCTCTGACAGAACCGC
ATAATGTGTTTGACGTCATAAATATTGTTACCGAAAAACACCCTGAGGAT
CGTCAAGAACTCGTCTAGGCCACTGGGCAAGCTCCGGCGCGTGAGGATCT
TAACCAGGTACCCGAAATCGTACGCGCTGTGGAACGTGACCCAACTCACC
GATTCGTTACAGACGAGTCCCGACGACATCATCAACTCGGCGAACCGAAC
CGAGTCAACGCCTTCCTTCCTGTTGCGCTCAAAGTCAATCCCCTGCAGTC
TCAGCAGCTCTATCGAATCCGGCGCGTGGGCGTCCGTCGCGATATCGAAG
TCCCGGAAGTTGAACTCCCAGATGAATTTATTGTTGCCCCCGGAGCCCAA
ATCCGGCAAGTTACCGGAAGAGTCAGAGAGAGTGAGGCCCACCTGGATCA
AGTTCAAGGCGTCGACGTTGGATTTCAGAACCTTGTAGTGATCGGACGGC
TTGCGTTGACGGAAGTAGGCCTGGTGGAGGGGTCACATCGGGTCG
back to top