CX296875

Overview
NameCX296875
Unique NameCX296875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13299 contig Ccv1_Contig13299:531..1275. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.869e-21
Identity = 68/193 (35.23%), Postives = 99/193 (51.30%), Query Frame = -2
Query:  121 DHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 693
            + Y  +  +VD   LIQ+GLTL D +G +     GG     WE NF DF +  DA    SIE LR  G+D  + R+EG+    F   M         +++WVTFH +YD  YL+K  T  +LP   + F   +    G ++YD+K +   C+ L    GL+ +A    ++R VG  H AGS++ LT   F K+
Sbjct:   35 ERYMDMSFSVDRAKLIQLGLTLFDINGRI-----GGT----WEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLG-SVYDLKVMAGRCEGLSSRLGLETLAHEFGLNR-VGTAHHAGSNNELTAMVFAKV 215          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.804e-20
Identity = 68/192 (35.42%), Postives = 92/192 (47.92%), Query Frame = -2
Query:  121 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTR-RSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 687
            Y+ +K NVD  +LIQ+G TL D  G              WE N  DFD         SI  L+  G++ ++ R+EG+    F           +  ++WV F  +YD  YLVK LT  + LP   +EF   ++   G  ++DVK I   C  L    GL R+A  L + R VGK H AGSDS LT   F K+
Sbjct:   54 YRDMKFNVDNTHLIQLGFTLFDRRGFAKT----------WEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKR-VGKAHHAGSDSELTARVFTKL 234          
BLAST of CX296875 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.224e-18
Identity = 66/192 (34.38%), Postives = 90/192 (46.88%), Query Frame = -2
Query:  121 YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTR-RSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 687
            Y+ +K NVD  +LIQ+G TL D  G              WE N  DF+         SI  L+  G++ ++  +EG+    F           +  ++WV F  +YD  YLVK LT  + LP   +EF   +    G  ++DVK I   C  L    GL R+A  L + R VGK H AGSDS LT   F K+
Sbjct:   49 YRDMKFNVDNTHLIQLGFTLFDRRGITKT----------WEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKR-VGKAHHAGSDSELTARVFTKL 229          
The following BLAST results are available for this feature:
BLAST of CX296875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1H_ARATH5.869e-2135.23Putative CCR4-associated factor 1 homolog 8 OS=Ara... [more]
CAF1C_ARATH3.804e-2035.42Putative CCR4-associated factor 1 homolog 3 OS=Ara... [more]
CAF1D_ARATH1.224e-1834.38Putative CCR4-associated factor 1 homolog 4 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC05803G08SK FerrChloL1 Citrus clementina cDNA clone C05803G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296875 ID=CX296875; Name=CX296875; organism=Citrus clementina; type=EST; length=745bp
GATTCGGCCGAGGCCTCGTGCCGAATTCGGCACGAGGCAAAATTAAATTT
AGTACACTTCTAGTCCATACAATACGCCGGCATGTTTCTCCGGTCCGTCA
TGGACGAAATACACATCCCTAATTTTTTGAAAGGCATGCCAGGTCAGAAG
GCTATCCGAACCGGCCTGGTGGCACTTCCCGACCGCCCGGCTCACATCCA
ACGTCCGAGCCACTCGGTCCAAACCACCGTACAAGCTCTGACAGAACCGC
ATAATGTGTTTGACGTCATAAATATTGTTACCGAAAAACACCCTGAGGAT
CGTCAAGAACTCGTCTAGGCCACTGGGCAAGCTCCGGCGCGTGAGGATCT
TAACCAGGTACCCGAAATCGTACGCGCTGTGGAACGTGACCCAACTCACC
GATTCGTTACAGACGAGTCCCGACGACATCATCAACTCGGCGAACCGAAC
CGAGTCAACGCCTTCCTTCCTGTTGCGCTCAAAGTCAATCCCCTGCAGTC
TCAGCAGCTCTATCGAATCCGGCGCGTGGGCGTCCGTCGCGATATCGAAG
TCCCGGAAGTTGAACTCCCAGATGAATTTATTGTTGCCCCCGGAGCCCAA
ATCCGGCAAGTTACCGGAAGAGTCAGAGAGAGTGAGGCCCACCTGGATCA
AGTTCAAGGCGTCGACGTTGGATTTCAGAACCTTGTAGTGATCGGACGGC
TTGCGTTGACGGAAGTAGGCCTGGTGGAGGGGTCACATCGGGTCG
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