CX296876

Overview
NameCX296876
Unique NameCX296876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296876_ssr181 microsatellite CX296876_ssr181:181..194. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296876_ssr27 microsatellite CX296876_ssr27:27..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig721 contig Ccv1_Contig721:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK65_ARATH (Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.037e-23
Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = -3
Query:  286 KDHSDDLSGKFSGSTSGNNKC----------HCSKRRKNRV-KKTIRVP-----AISSKIADIPP-DEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 603
            + ++D  S + +G  S N+            H  KR +  V K+ + VP         K    PP D ++WRKYGQKPIKGSPYPRGYY+CS+ +GCPARK VER+ DDPTM+++TY  EH H
Sbjct:    9 RSYNDHESSQETGPESPNSSTFNGMKALISSHSPKRSRRSVEKRVVNVPMKEMEGSRHKGDTTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNH 131          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK22_ARATH (WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.030e-22
Identity = 58/116 (50.00%), Postives = 69/116 (59.48%), Query Frame = -3
Query:  286 QPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 633
            +P K + Q         SG  +   SG+N    SKRRK + KK   V A +     +  D ++WRKYGQKPIKGSPYPRGYY+CST +GC ARK VER   DP M IVTY  EH H
Sbjct:   76 EPRKPQNQKRPLSLSASSGSVTSKPSGSNTSR-SKRRKIQHKKVCHVAAEA-----LNSDVWAWRKYGQKPIKGSPYPRGYYRCSTSKGCLARKQVERNRSDPKMFIVTYTAEHNH 185          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK69_ARATH (Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.294e-22
Identity = 54/127 (42.52%), Postives = 74/127 (58.27%), Query Frame = -3
Query:  184 KRRKNRVKKTIRVPAISSKIADI-----------PPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFEST*ENEQKRKSRERE 531
            K+R+N  K+ + VP     IAD+           P D ++WRKYGQKPIKGSPYPRGYY+CS+ +GCPARK VER+  DP+ L++TY  +H H   +   N        V   T + E++ +  E E
Sbjct:   40 KKRRNVEKRVVSVP-----IADVEGSKSRGEVYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPSKLMITYACDHNHPFPSSSANTKSHHRSSVVLKTAKKEEEYEEEEEE 161          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK27_ARATH (Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.804e-20
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  256 SKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAA 534
            S++RKN+ K+TI      +  +D+    ++WRKYGQKPIKGSPYPR YY+CS+ +GC ARK VER+  DP + IVTY GEH H +   + + A
Sbjct:  144 SRKRKNQQKRTICHVTQENLSSDL----WAWRKYGQKPIKGSPYPRNYYRCSSSKGCLARKQVERSNLDPNIFIVTYTGEHTHPRPTHRNSLA 232          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK29_ARATH (Probable WRKY transcription factor 29 OS=Arabidopsis thaliana GN=WRKY29 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.907e-19
Identity = 48/128 (37.50%), Postives = 67/128 (52.34%), Query Frame = -3
Query:  256 QDHKDHSDDLSGKFSGSTSGN---------NKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAA 612
            +D K   DD   +  G    N         ++    K +KN+ K+ +       K  ++  D ++WRKYGQKPIKGSPYPR YY+CS+ +GC ARK VER P +P    +TY  EH H     + + A
Sbjct:   78 EDSKPFRDDKKQRSHGCLLSNGSRADHIRISESKSKKSKKNQQKRVVE----QVKEENLLSDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERNPQNPEKFTITYTNEHNHELPTRRNSLA 201          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = -3
Query:  250 KRRKNRVKKTIRVPAISSKIA-------------DIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPA 531
            KRR   V+ +   PA S +               D+  D Y WRKYGQK +KG+PYPR YYKC+T  GC  RKHVERA  DP  ++ TYEG+H H   A + ++  A
Sbjct:  372 KRRSTEVRISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPAAKSSSHAA 477          

HSP 2 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = -3
Query:  286 DIPPDE-YSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 468
            D P D+ Y+WRKYGQK +KGS +PR YYKC T  GCP +K VER+ D     I+ Y+G+H H
Sbjct:  225 DKPADDGYNWRKYGQKQVKGSEFPRSYYKC-TNPGCPVKKKVERSLDGQVTEII-YKGQHNH 284          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = -3
Query:  286 LAPQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSG-STSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 684
            L   +P VS+       +P K+   D  D  +D  G   G   S        K++  + ++ +RV  ++    D   D Y WRKYGQK +K SPYPR YY+C+T + C  +K VER+  DP+++I TYEG+H H
Sbjct:   63 LTSNSPVVSSSSNE--GEP-KENTNDKSDQMEDNEGDLHGVGESSKQLTKQGKKKGEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQK-CNVKKRVERSFQDPSIVITTYEGKHNH 192          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = -3
Query:  274 KTIRVPAI---SSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAA 507
            KT+R P I   ++   DI  D Y WRKYGQK +KG+P PR YYKC+T+ GCP RKHVERA  D   +I TYEG+H H   A
Sbjct:  343 KTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTI-GCPVRKHVERASHDMRAVITTYEGKHNHDVPA 422          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK16_ARATH (Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = -3
Query:  256 SKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAA 534
            S+R+ N+ K+ + V    S+ +D+    + WRKYGQKPIK SPYPR YY+C++ +GC ARK VER+  DP + ++TY  EH H    ++   A
Sbjct: 1159 SRRKNNKEKRVVCVVDRGSRSSDL----WVWRKYGQKPIKSSPYPRSYYRCASSKGCFARKQVERSRTDPNVSVITYISEHNHPFPTLRNTLA 1247          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.637e-18
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = -3
Query:  286 RVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 498
            R+   +  + DI  D Y WRKYGQK +KGSPYPR YY+CS+  GCP +KHVER+  D  +LI TYEG+H H
Sbjct:  294 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDH 363          
The following BLAST results are available for this feature:
BLAST of CX296876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
WRK65_ARATH6.037e-2345.53Probable WRKY transcription factor 65 OS=Arabidops... [more]
WRK22_ARATH1.030e-2250.00WRKY transcription factor 22 OS=Arabidopsis thalia... [more]
WRK69_ARATH2.294e-2242.52Probable WRKY transcription factor 69 OS=Arabidops... [more]
WRK27_ARATH2.804e-2050.54Probable WRKY transcription factor 27 OS=Arabidops... [more]
WRK29_ARATH6.907e-1937.50Probable WRKY transcription factor 29 OS=Arabidops... [more]
WRKY4_ARATH3.428e-1843.93Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRK71_ARATH3.428e-1836.57Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRK33_ARATH3.428e-1855.56Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRK16_ARATH5.847e-1844.09Probable WRKY transcription factor 16 OS=Arabidops... [more]
WRKY1_ARATH7.637e-1856.34WRKY transcription factor 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC05803G09SK FerrChloL1 Citrus clementina cDNA clone C05803G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296876 ID=CX296876; Name=CX296876; organism=Citrus clementina; type=EST; length=731bp
GAGGCATATCTCTACCGAATGACAATTTAATTAATTAATTAATTTTTTTT
TAAATTTTACTCCAACAAAATTTACATTAATACCCTCCATCCGACCTTCC
ATCGGCCCCGCAACAACATCGATATTAGAAAATGCTACCGCGTCTTGTCA
TTATCTTCCCACCCACTTTCCTTTATCAATTCTCTCTCTCTCTCTACTTT
TTCTTTTTTGTTCATTTTCTCACGTTGACTCGAAAACCAAACCCACTCCA
GCAGGGGCCGCGTTCTCCTGCATCGCGGCCTGCGAATGCCGGTGCTCTCC
TTCGTACGTCACAATCAGCATCGTTGGATCGTCTGGTGCCCTCTCCACGT
GTTTCCTGGCTGGGCACCCTCTCATTGTACTGCACTTGTAATAGCCGCGT
GGGTATGGTGAGCCCTTGATCGGCTTTTGACCATACTTCCTCCAAGAATA
CTCGTCCGGTGGAATATCGGCTATTTTTGAACTAATCGCCGGCACTCTAA
TAGTTTTCTTTACTCGGTTTTTCCTTCTCTTAGAGCAGTGACACTTGTTG
TTGCCAGAGGTGGAGCCGGAGAACTTGCCGGAAAGATCATCGGAATGATC
TTTATGATCTTGACACCTCTTCTTGTAAGGCTGAGCCGCGAGCGGCGGCT
TTCCAGCGGAAACAGCAGGAGCTTGTGGCGCCAGGAAGATCGAAGATCCT
CCTTTGCTCCCGTTCGAAACGCTGCCGTCTC
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