CX296876

Overview
NameCX296876
Unique NameCX296876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296876_ssr181 microsatellite CX296876_ssr181:181..194. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296876_ssr27 microsatellite CX296876_ssr27:27..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig721 contig Ccv1_Contig721:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 45/99 (45.45%), Postives = 57/99 (57.58%), Query Frame = -3
Query:  286 SGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 582
            S    G   G ++    + ++    K  RV   ++   DI  D Y WRKYGQK +KG+P PR YYKC T  GC  RKHVERA  DP  +I TYEG+H+H
Sbjct:  193 SSNGDGKDIGEDETEAKRWKREENVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKC-TFTGCFVRKHVERAFQDPKSVITTYEGKHKH 290          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 43/77 (55.84%), Postives = 50/77 (64.94%), Query Frame = -3
Query:  286 KTIRVPAISSKI---ADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 507
            K IR P +  +     DI  D Y WRKYGQK ++G+P PR YYKC T  GCP RKHVERA  DP  +I TYEG+H H
Sbjct:  362 KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKC-TAHGCPVRKHVERASHDPKAVITTYEGKHDH 437          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 51/130 (39.23%), Postives = 65/130 (50.00%), Query Frame = -3
Query:  235 KDHSDDLSGKFSGSTSGNNKCHCSKRRK----NRVKKTIRVPAI---SSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLV 603
            KDH DD           +     SK R+    +   +T+  P I   +    D+  D Y WRKYGQK +KG+P+PR YYKC+T   C  RKHVERA  D   +I TYEG+H H   A +   A A    V
Sbjct:  256 KDHDDD-----DDDDEDDEDLPASKIRRIDGVSTTHRTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTT-PNCTVRKHVERASTDAKAVITTYEGKHNHDVPAARNGTAAATAAAV 379          

HSP 2 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = -3
Query:  223 DIPPDE-YSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQ------AAMQENAAPAGVGLVFEST 468
            D P D+ Y+WRKYGQKPIKG  YPR YYKC T   CP +K VER+ D     I+ Y+G+H H +         +++    G G + ES+
Sbjct:  163 DKPADDGYNWRKYGQKPIKGCEYPRSYYKC-THVNCPVKKKVERSSDGQITQII-YKGQHDHERPQNRRGGGGRDSTEVGGAGQMMESS 249          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  259 KRRKNRVK---------KTIRVPAI---SSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENA 531
            KRR   V+         +T+  P I   ++   D+  D Y WRKYGQK +KG+PYPR YYKC+T   C  RKHVERA  DP  ++ TYEG+H H   A + ++
Sbjct:  379 KRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSS 480          

HSP 2 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  286 ADIPPDE-YSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 471
            AD P D+ Y+WRKYGQK +KGS +PR YYKC T   CP +K VER+ D     I+ Y+G+H H
Sbjct:  245 ADKPADDGYNWRKYGQKQVKGSDFPRSYYKC-THPACPVKKKVERSLDGQVTEII-YKGQHNH 305          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = -3
Query:  286 SKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 534
            +K++  +  +  R   ++    D   D Y WRKYGQK +K SPYPR YY+C+T+ GC  +K VER+ DDP++++ TYEG+H H
Sbjct:  196 AKKKNQKKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTV-GCGVKKRVERSSDDPSIVMTTYEGQHTH 277          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK44_ARATH (WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = -3
Query:  286 SKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 534
            SKRRKN  + +    +  S  +D   D + WRKYGQK + G+ YPR YY+C T   C ARKHVERA DDP   I TYEG+H H
Sbjct:  324 SKRRKNEKQSSEAGVSQGSVESDSLEDGFRWRKYGQKVVGGNAYPRSYYRC-TSANCRARKHVERASDDPRAFITTYEGKHNH 405          

HSP 2 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = -3
Query:  280 DEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQ 456
            D Y+WRKYGQK +KGS  PR YYKC T   CP +K VER+ +     IV Y+GEH HS+
Sbjct:  166 DGYNWRKYGQKQVKGSECPRSYYKC-THPKCPVKKKVERSVEGQVSEIV-YQGEHNHSK 222          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.103e-16
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = -3
Query:  286 KRRKNRVKKTI--RVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 531
            K +K  VKK    RV  ++    D   D Y WRKYGQK +K SPYPR YY+C+T + C  +K VER+  DPT++I TYEG+H H
Sbjct:  146 KTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQK-CNVKKRVERSFQDPTVVITTYEGQHNH 228          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.440e-16
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = -3
Query:  286 RRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 528
            ++K   KK  RV  ++    D   D Y WRKYGQK +K SPYPR YY+C+T + C  +K VER+  DPT++I TYE +H H
Sbjct:  160 KKKEEKKKEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQK-CNVKKRVERSYQDPTVVITTYESQHNH 239          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK50_ARATH (Probable WRKY transcription factor 50 OS=Arabidopsis thaliana GN=WRKY50 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.440e-16
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = -3
Query:  283 SKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHS 534
            +K+ K ++K  +     S    ++  D + WRKYG+K +K SP+PR YYKCS + GCP +K VER  DDP+ +I TYEG H HS
Sbjct:   90 NKKEKKKIKGRVAFKTRSE--VEVLDDGFKWRKYGKKMVKNSPHPRNYYKCS-VDGCPVKKRVERDRDDPSFVITTYEGSHNHS 170          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 48/107 (44.86%), Postives = 58/107 (54.21%), Query Frame = -3
Query:  247 SKRRK-----------NRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAG 534
            SKRRK            R  +  RV   ++   DI  D Y WRKYGQK +KG+P PR YYKC T  GC  RKHVERA  D   +I TYEG+H H   A + ++   G
Sbjct:  451 SKRRKLEAFAAEMSGSTRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKC-TAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHGGG 556          
The following BLAST results are available for this feature:
BLAST of CX296876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
WRK26_ARATH9.974e-1845.45Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRK20_ARATH2.902e-1755.84Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRK58_ARATH3.790e-1739.23Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRKY3_ARATH4.950e-1743.69Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRK48_ARATH6.465e-1744.58Probable WRKY transcription factor 48 OS=Arabidops... [more]
WRK44_ARATH6.465e-1751.81WRKY transcription factor 44 OS=Arabidopsis thalia... [more]
WRK28_ARATH1.103e-1650.00Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRKY8_ARATH1.440e-1648.15Probable WRKY transcription factor 8 OS=Arabidopsi... [more]
WRK50_ARATH1.440e-1646.43Probable WRKY transcription factor 50 OS=Arabidops... [more]
WRKY2_ARATH1.881e-1644.86Probable WRKY transcription factor 2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC05803G09SK FerrChloL1 Citrus clementina cDNA clone C05803G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296876 ID=CX296876; Name=CX296876; organism=Citrus clementina; type=EST; length=731bp
GAGGCATATCTCTACCGAATGACAATTTAATTAATTAATTAATTTTTTTT
TAAATTTTACTCCAACAAAATTTACATTAATACCCTCCATCCGACCTTCC
ATCGGCCCCGCAACAACATCGATATTAGAAAATGCTACCGCGTCTTGTCA
TTATCTTCCCACCCACTTTCCTTTATCAATTCTCTCTCTCTCTCTACTTT
TTCTTTTTTGTTCATTTTCTCACGTTGACTCGAAAACCAAACCCACTCCA
GCAGGGGCCGCGTTCTCCTGCATCGCGGCCTGCGAATGCCGGTGCTCTCC
TTCGTACGTCACAATCAGCATCGTTGGATCGTCTGGTGCCCTCTCCACGT
GTTTCCTGGCTGGGCACCCTCTCATTGTACTGCACTTGTAATAGCCGCGT
GGGTATGGTGAGCCCTTGATCGGCTTTTGACCATACTTCCTCCAAGAATA
CTCGTCCGGTGGAATATCGGCTATTTTTGAACTAATCGCCGGCACTCTAA
TAGTTTTCTTTACTCGGTTTTTCCTTCTCTTAGAGCAGTGACACTTGTTG
TTGCCAGAGGTGGAGCCGGAGAACTTGCCGGAAAGATCATCGGAATGATC
TTTATGATCTTGACACCTCTTCTTGTAAGGCTGAGCCGCGAGCGGCGGCT
TTCCAGCGGAAACAGCAGGAGCTTGTGGCGCCAGGAAGATCGAAGATCCT
CCTTTGCTCCCGTTCGAAACGCTGCCGTCTC
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