CX296876

Overview
NameCX296876
Unique NameCX296876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296876_ssr181 microsatellite CX296876_ssr181:181..194. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296876_ssr27 microsatellite CX296876_ssr27:27..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig721 contig Ccv1_Contig721:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK57_ARATH (Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = -3
Query:  286 RRKNRVKKTIRVPA---ISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 528
            + K + +K IR P    ++    D   D Y WRKYGQK +K SP+PR YY+C+  R C  +K VER+ DDP+++I TYEG+H H
Sbjct:  121 KEKKKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSR-CTVKKRVERSSDDPSIVITTYEGQHCH 203          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 46/126 (36.51%), Postives = 69/126 (54.76%), Query Frame = -3
Query:  250 SDDLSGKFSGSTSGNNKCHCSKRR--------KNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAM---QENAAPA 594
            S+ ++G       G  + H +K+R        K   KK  +V  I+        D Y WRKYGQKP+K SP+PR YY+C+T   C  +K VER+  DP+ +I TYEG+H H +  +   +E ++P+
Sbjct:   65 SEAVNGDDEEEEDGEEQQHKTKKRFKFTKMSRKQTKKKVPKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTT-TWCDVKKRVERSFSDPSSVITTYEGQHTHPRPLLIMPKEGSSPS 189          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.335e-16
Identity = 52/140 (37.14%), Postives = 69/140 (49.29%), Query Frame = -3
Query:  241 YKKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRK-----------NRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVG 627
            Y+   +D +     +S  + G    +     SKRRK            R  +  RV   ++   DI  D Y WRKYGQK +KG+P PR YYKC T  GC   KHVERA DD   ++ TY G+H H   A + N++  G G
Sbjct:  309 YRDENEDDRTSHMSVSLTYDGEVEESE----SKRRKLEAYATETSGSTRASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKC-TANGCTVTKHVERASDDFKSVLTTYIGKHTHVVPAAR-NSSHVGAG 442          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK55_ARATH (WRKY transcription factor 55 OS=Arabidopsis thaliana GN=WRKY55 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.219e-15
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = -3
Query:  244 SGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDE-YSWRKYGQKPIKGSPYPRGYYKCSTMR--GCPARKHVERAPDDPTMLIVTYEGEHR--HSQAAMQENAAPAGV 558
            SG++     +R+    ++T+ V A+ +   D+PPD+ ++WRKYGQK I GS +PR YY+C+  +   CPA+K V+R  DDP    VTY G H   +S A    +A P+ +
Sbjct:  139 SGSSTPRQRRRKDEGEEQTVLVAALRTGNTDLPPDDNHTWRKYGQKEILGSRFPRAYYRCTHQKLYNCPAKKQVQRLNDDPFTFRVTYRGSHTCYNSTAPTASSATPSTI 248          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = -3
Query:  283 HSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKI---ADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHS 597
            H D  S     +T+        K +K + ++ +R P    K     D+  D Y WRKYGQK +K + +PR YY+C T   C  +K VER  DDP M+I TYEG H HS
Sbjct:  174 HHDTPSRHDKHNTASLGVVSSLKMKKLKTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRC-TQDKCRVKKRVERLADDPRMVITTYEGRHLHS 280          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK18_ARATH (WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 46/136 (33.82%), Postives = 67/136 (49.26%), Query Frame = -3
Query:  286 PYKKRCQDHKDHSDDLSGKFSGST--SGNNKCHCSKRRKNRVKK-------------------TIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 630
            P KKR QD  +      G  SG T  S +N+ H    +++  K                    T+ VP  +S  +    D + WRKYGQK  + +P PR Y++CS    CP +K V+R+ +DP++L+ TYEG H H
Sbjct:   98 PIKKRKQDPDEFLGFPIGLSSGKTENSSSNEDHHHHHQQHEQKNQLLSCKRPVTDSFNKAKVSTVYVPTETSDTSLTVKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNH 233          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK32_ARATH (Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = -3
Query:  235 DEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLV 456
            D Y WRKYGQK +KG+P+PR YY+C T  GCP RKH+E A ++   +I+TY+G H H     ++   P    LV
Sbjct:  332 DGYRWRKYGQKMVKGNPHPRNYYRC-TSAGCPVRKHIETAVENTKAVIITYKGVHNHDMPVPKKRHGPPSSMLV 404          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 43/131 (32.82%), Postives = 70/131 (53.44%), Query Frame = -3
Query:  286 PQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 678
            P + ++S+     A    K + +D+++      G+     S   K   +K+   + ++  RV  ++    D   D Y WRKYGQK +K SP+PR YY+C+T   C  +K VER+  DP+ ++ TYEG+H H
Sbjct:  106 PNSSSISSASSE-ALNEEKPKTEDNEEEG----GEDQQEKSHTKKQLKAKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTT-ASCNVKKRVERSFRDPSTVVTTYEGQHTH 230          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK56_ARATH (Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = -3
Query:  253 STSGNNKCHCSKRRKNRVKKTIRVPAISSKIA---DIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAP 564
            S + NN  H     K + K+T+ +  I+       D+  D Y WRKYGQK +K + +PR YY+C T   C  +K V+R   DP +++ TYEG H H    + E  +P
Sbjct:   76 SNNSNNSDHNKNCNKGKGKRTLAMQRIAFHTRSDDDVLDDGYRWRKYGQKSVKNNAHPRSYYRC-TYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLSP 181          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  286 KDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 603
            K H+       +GS + ++K       +  ++K  RV   +   A +  D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D T+LI TYEG H H
Sbjct:  245 KHHASSSICGGNGSENASSKVIEQAAAEATMRKA-RVSVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 349          
The following BLAST results are available for this feature:
BLAST of CX296876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
WRK57_ARATH4.190e-1646.43Probable WRKY transcription factor 57 OS=Arabidops... [more]
WRK68_ARATH7.148e-1636.51Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRK34_ARATH9.335e-1637.14Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRK55_ARATH1.219e-1539.09WRKY transcription factor 55 OS=Arabidopsis thalia... [more]
WRK13_ARATH2.716e-1539.81Probable WRKY transcription factor 13 OS=Arabidops... [more]
WRK18_ARATH3.547e-1533.82WRKY transcription factor 18 OS=Arabidopsis thalia... [more]
WRK32_ARATH4.633e-1547.30Probable WRKY transcription factor 32 OS=Arabidops... [more]
WRK23_ARATH4.633e-1532.82Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK56_ARATH7.903e-1536.45Probable WRKY transcription factor 56 OS=Arabidops... [more]
WRK42_ARATH7.903e-1539.62Probable WRKY transcription factor 42 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05803G09SK FerrChloL1 Citrus clementina cDNA clone C05803G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296876 ID=CX296876; Name=CX296876; organism=Citrus clementina; type=EST; length=731bp
GAGGCATATCTCTACCGAATGACAATTTAATTAATTAATTAATTTTTTTT
TAAATTTTACTCCAACAAAATTTACATTAATACCCTCCATCCGACCTTCC
ATCGGCCCCGCAACAACATCGATATTAGAAAATGCTACCGCGTCTTGTCA
TTATCTTCCCACCCACTTTCCTTTATCAATTCTCTCTCTCTCTCTACTTT
TTCTTTTTTGTTCATTTTCTCACGTTGACTCGAAAACCAAACCCACTCCA
GCAGGGGCCGCGTTCTCCTGCATCGCGGCCTGCGAATGCCGGTGCTCTCC
TTCGTACGTCACAATCAGCATCGTTGGATCGTCTGGTGCCCTCTCCACGT
GTTTCCTGGCTGGGCACCCTCTCATTGTACTGCACTTGTAATAGCCGCGT
GGGTATGGTGAGCCCTTGATCGGCTTTTGACCATACTTCCTCCAAGAATA
CTCGTCCGGTGGAATATCGGCTATTTTTGAACTAATCGCCGGCACTCTAA
TAGTTTTCTTTACTCGGTTTTTCCTTCTCTTAGAGCAGTGACACTTGTTG
TTGCCAGAGGTGGAGCCGGAGAACTTGCCGGAAAGATCATCGGAATGATC
TTTATGATCTTGACACCTCTTCTTGTAAGGCTGAGCCGCGAGCGGCGGCT
TTCCAGCGGAAACAGCAGGAGCTTGTGGCGCCAGGAAGATCGAAGATCCT
CCTTTGCTCCCGTTCGAAACGCTGCCGTCTC
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