CX296876

Overview
NameCX296876
Unique NameCX296876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296876_ssr181 microsatellite CX296876_ssr181:181..194. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296876_ssr27 microsatellite CX296876_ssr27:27..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig721 contig Ccv1_Contig721:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 40/107 (37.38%), Postives = 56/107 (52.34%), Query Frame = -3
Query:  286 HKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 606
            H   S + +G  +G+    +    + R+        RV   +   A +  D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D ++LI TYEG H H
Sbjct:  255 HNPSSSNSNGNRNGNVIDQSAAEATMRKA-------RVSVRARSEAAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNH 354          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = -3
Query:  283 DEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHS 456
            D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  DD ++LI TYEG H HS
Sbjct:  228 DGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHS 285          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 52/149 (34.90%), Postives = 67/149 (44.97%), Query Frame = -3
Query:  214 AQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVK----KTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH----SQAAMQENAAPAGVGLVFEST*EN 636
            A   K+R  D  D  D   G         NK    + ++N       +  RV   +   A    D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D T+L  TYEG H H    S  AM    + A   L+  S+  N
Sbjct:  176 ATTLKRRSPDDVDGRDMHRGSPKTPRIDQNKSTNHEEQQNPHDQLPYRKARVSVRARSDATTVNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLPPSATAMAATTSAAAAMLLSGSSSSN 324          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK52_ARATH (Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = -3
Query:  256 KRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCS--TMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAA 531
            K  ++RVKK + +PAI         D ++WRKYGQK I GS +PRGYY+C+     GC A K V+R+  D  ML +TY  EH H +   ++  A
Sbjct: 1190 KHSESRVKKVVSIPAIDEG------DLWTWRKYGQKDILGSRFPRGYYRCAYKFTHGCKATKQVQRSETDSNMLAITYLSEHNHPRPTKRKALA 1277          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = -3
Query:  286 RVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 498
            RV   +   A +  D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D ++LI TYEG H H
Sbjct:  299 RVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNH 369          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK10_ARATH (Probable WRKY transcription factor 10 OS=Arabidopsis thaliana GN=WRKY10 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  256 RVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH-SQAAMQENAA 516
            R  KT R+        D P D Y WRKYGQK +KG+P PR Y+KC+ +  C  +KHVER  D+  +++ TY+G H H S  A + N++
Sbjct:  288 RTSKTQRIILQMESDEDNPNDGYRWRKYGQKVVKGNPNPRSYFKCTNIE-CRVKKHVERGADNIKLVVTTYDGIHNHPSPPARRSNSS 374          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = -3
Query:  286 DEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 456
            D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D ++LI TYEG H H
Sbjct:  236 DGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNH 292          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK61_ARATH (Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 39/79 (49.37%), Postives = 47/79 (59.49%), Query Frame = -3
Query:  286 KNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 522
            +N VKKT RV   S        D   WRKYGQK  KG+P PR YY+C+    CP RK V+R  +D ++LI TYEG H H
Sbjct:  171 QNLVKKT-RVSVRSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSEDMSILISTYEGTHNH 248          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK40_ARATH (Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = -3
Query:  286 LSGKFSGSTSGNNKCHCSKRRKNRVKKT----IRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 585
            + G    S++  ++  C K+R+  V K     +     +S    +  D Y WRKYGQK  + +P PR Y+KC+    C  +K V+R+ +D ++L+ TYEGEH H
Sbjct:  100 IGGVSESSSTDQDEYLCKKQREETVVKEKVSRVYYKTEASDTTLVVKDGYQWRKYGQKVTRDNPSPRAYFKCACAPSCSVKKKVQRSVEDQSVLVATYEGEHNH 203          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK45_ARATH (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = -3
Query:  262 STSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQEN 564
            +TS   K    K++K R     R    +    DI  D Y WRKYGQK +K +P+PR YYKC T  GC  +K V+R   D  +++ TY+G H H+     +N
Sbjct:   33 TTSSEEKPRSKKKKKER---EARYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKC-TEEGCRVKKQVQRQWGDEGVVVTTYQGVHTHAVDKPSDN 129          
The following BLAST results are available for this feature:
BLAST of CX296876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
WRK31_ARATH7.903e-1537.38Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRK72_ARATH1.032e-1458.62Probable WRKY transcription factor 72 OS=Arabidops... [more]
WRK47_ARATH1.032e-1434.90Probable WRKY transcription factor 47 OS=Arabidops... [more]
WRK52_ARATH1.761e-1442.55Probable WRKY transcription factor 52 OS=Arabidops... [more]
WRKY6_ARATH2.299e-1449.30WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRK10_ARATH3.003e-1443.18Probable WRKY transcription factor 10 OS=Arabidops... [more]
WRKY9_ARATH6.690e-1456.14Probable WRKY transcription factor 9 OS=Arabidopsi... [more]
WRK61_ARATH6.690e-1449.37Probable WRKY transcription factor 61 OS=Arabidops... [more]
WRK40_ARATH1.141e-1334.62Probable WRKY transcription factor 40 OS=Arabidops... [more]
WRK45_ARATH1.947e-1338.61Probable WRKY transcription factor 45 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05803G09SK FerrChloL1 Citrus clementina cDNA clone C05803G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296876 ID=CX296876; Name=CX296876; organism=Citrus clementina; type=EST; length=731bp
GAGGCATATCTCTACCGAATGACAATTTAATTAATTAATTAATTTTTTTT
TAAATTTTACTCCAACAAAATTTACATTAATACCCTCCATCCGACCTTCC
ATCGGCCCCGCAACAACATCGATATTAGAAAATGCTACCGCGTCTTGTCA
TTATCTTCCCACCCACTTTCCTTTATCAATTCTCTCTCTCTCTCTACTTT
TTCTTTTTTGTTCATTTTCTCACGTTGACTCGAAAACCAAACCCACTCCA
GCAGGGGCCGCGTTCTCCTGCATCGCGGCCTGCGAATGCCGGTGCTCTCC
TTCGTACGTCACAATCAGCATCGTTGGATCGTCTGGTGCCCTCTCCACGT
GTTTCCTGGCTGGGCACCCTCTCATTGTACTGCACTTGTAATAGCCGCGT
GGGTATGGTGAGCCCTTGATCGGCTTTTGACCATACTTCCTCCAAGAATA
CTCGTCCGGTGGAATATCGGCTATTTTTGAACTAATCGCCGGCACTCTAA
TAGTTTTCTTTACTCGGTTTTTCCTTCTCTTAGAGCAGTGACACTTGTTG
TTGCCAGAGGTGGAGCCGGAGAACTTGCCGGAAAGATCATCGGAATGATC
TTTATGATCTTGACACCTCTTCTTGTAAGGCTGAGCCGCGAGCGGCGGCT
TTCCAGCGGAAACAGCAGGAGCTTGTGGCGCCAGGAAGATCGAAGATCCT
CCTTTGCTCCCGTTCGAAACGCTGCCGTCTC
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