CX296876

Overview
NameCX296876
Unique NameCX296876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296876_ssr181 microsatellite CX296876_ssr181:181..194. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296876_ssr27 microsatellite CX296876_ssr27:27..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig721 contig Ccv1_Contig721:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 42/116 (36.21%), Postives = 58/116 (50.00%), Query Frame = -3
Query:  286 DDLSGKFSGSTSGNNKCHCSK-----------RRKNRVKKTIRVPAI---SSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 591
            +D    F G T  NN  H +            + K ++++ +R P     +    D+  D Y WRKYGQK +K S +PR YY+C T   C  +K VER  +D  M+I TYEG H H
Sbjct:   89 NDDQENFGGGT--NNDAHSNSWWRSNSGSGDMKNKVKIRRKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRC-THNNCRVKKRVERLSEDCRMVITTYEGRHNH 201          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK24_ARATH (Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = -3
Query:  214 RKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFEST*EN 525
            ++ R +K  R+   +    D+  D Y WRKYGQK +K + +PR YY+C T   C  +K V+R   DP +++ TYEG H H    + E   P    L F S+  N
Sbjct:   76 KEKRSRKVPRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRC-TYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLNPLLRQLQFLSSFSN 178          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK59_ARATH (Probable WRKY transcription factor 59 OS=Arabidopsis thaliana GN=WRKY59 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = -3
Query:  286 NKCHCSKRRKNRVKKTIRVPAISSKIAD--IPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 549
            +K    KR++++    I V    S I +     D Y WRKYG+KPI GSP+PR Y+KCS+   C  +K +ER  ++P  ++ TYEG H H
Sbjct:   77 DKDEIKKRKRHKEDPIIHVFKTKSSIDEKVALDDGYKWRKYGKKPITGSPFPRHYHKCSS-PDCNVKKKIERDTNNPDYILTTYEGRHNH 165          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRKY1_DICDI (Probable WRKY transcription factor protein 1 OS=Dictyostelium discoideum GN=wrky1 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 40/105 (38.10%), Postives = 54/105 (51.43%), Query Frame = -3
Query:  286 DHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 600
            +  D+ +     + + NN  + S +  N           S+ I++I  D Y WRKYGQK +KGS +PR YYKC T +GC  RK VER   D       Y+GEH H
Sbjct:  767 NEEDEENNSTQNNNNNNNNNNNSPQNSNTNSNNSNNSNNSNNISNIVSDGYQWRKYGQKNVKGSLHPRHYYKC-TFQGCNVRKQVERI-GDTNQNSTVYKGEHCH 869          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK60_ARATH (Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = -3
Query:  283 DEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHS 456
            D Y WRKYGQK  + +P PR Y++CS    C  +K V+R+ +DP+ L+ TYEG H H+
Sbjct:  147 DGYQWRKYGQKITRDNPSPRAYFRCSFSPSCLVKKKVQRSAEDPSFLVATYEGTHNHT 204          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK49_ARATH (Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = -3
Query:  286 TIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 504
            T++V   S+ + D   D Y WRKYGQK IK SP PR YYKC T   C A+K VER+ D+    I+TYEG H H
Sbjct:  102 TLKVKNNSNGMCD---DGYKWRKYGQKSIKNSPNPRSYYKC-TNPICNAKKQVERSIDESNTYIITYEGFHFH 170          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = -3
Query:  286 VKKTIRVP-AISSKIADIPP--DEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 513
            V K ++ P  +   I+DI    D + WRKYGQK +KG+  PR YYKC T +GC  +K VER+  D   ++ TYEG H H
Sbjct:  307 VSKGVKEPRVVVQTISDIDVLIDGFRWRKYGQKVVKGNTNPRSYYKC-TFQGCGVKKQVERSAADERAVLTTYEGRHNH 384          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK75_ARATH (Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 38/106 (35.85%), Postives = 51/106 (48.11%), Query Frame = -3
Query:  262 GKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQEN 579
            G+   S   +  C  S     +  K  R    +    DI  D Y WRKYGQK +K + +PR YY+C T  GC  +K V+R   D  +++ TYEG H H      EN
Sbjct:   27 GEEESSKVRSEGCSKSVESSKKKGKKQRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRC-TYGGCNVKKQVQRLTVDQEVVVTTYEGVHSHPIEKSTEN 131          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK41_ARATH (Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  280 SKRRKNRVKKTIRVPAISSKIADIPPDE-YSWRKYGQKPIKGSPYPRGYYKCS--TMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQ 534
            SK+RK   K T +V     +  + P D+ +SWRKYGQK I G+ +PR YY+C+    + C A K V+R+  DPT+  VTY G H  SQ
Sbjct:  115 SKKRKMLPKWTEQVRISPERGLEGPHDDIFSWRKYGQKDILGAKFPRSYYRCTFRNTQYCWATKQVQRSDGDPTIFEVTYRGTHTCSQ 202          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK53_ARATH (Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 48/137 (35.04%), Postives = 69/137 (50.36%), Query Frame = -3
Query:  277 PQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDE-YSWRKYGQKPIKGSPYPRGYYKCS--TMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQA 678
            P++PA   G P         R ++  D      G  S S    +    SK+RK   K + +V     +  + P D+ +SWRKYGQK I G+ +PR YY+C+  + + C A K V+R+  D T+  VTY G H  SQA
Sbjct:   98 PESPASINGSP---------RSEEFAD-----GGGSSESHHRQDYIFNSKKRKMLPKWSEKVRISPERGLEGPQDDVFSWRKYGQKDILGAKFPRSYYRCTHRSTQNCWATKQVQRSDGDATVFEVTYRGTHTCSQA 220          
The following BLAST results are available for this feature:
BLAST of CX296876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
WRK12_ARATH2.542e-1336.21Probable WRKY transcription factor 12 OS=Arabidops... [more]
WRK24_ARATH3.320e-1336.54Probable WRKY transcription factor 24 OS=Arabidops... [more]
WRK59_ARATH4.336e-1341.11Probable WRKY transcription factor 59 OS=Arabidops... [more]
WRKY1_DICDI1.648e-1238.10Probable WRKY transcription factor protein 1 OS=Di... [more]
WRK60_ARATH3.671e-1248.28Probable WRKY transcription factor 60 OS=Arabidops... [more]
WRK49_ARATH3.671e-1252.05Probable WRKY transcription factor 49 OS=Arabidops... [more]
WRK25_ARATH3.671e-1245.57Probable WRKY transcription factor 25 OS=Arabidops... [more]
WRK75_ARATH6.262e-1235.85Probable WRKY transcription factor 75 OS=Arabidops... [more]
WRK41_ARATH1.395e-1144.32Probable WRKY transcription factor 41 OS=Arabidops... [more]
WRK53_ARATH1.822e-1135.04Probable WRKY transcription factor 53 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05803G09SK FerrChloL1 Citrus clementina cDNA clone C05803G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296876 ID=CX296876; Name=CX296876; organism=Citrus clementina; type=EST; length=731bp
GAGGCATATCTCTACCGAATGACAATTTAATTAATTAATTAATTTTTTTT
TAAATTTTACTCCAACAAAATTTACATTAATACCCTCCATCCGACCTTCC
ATCGGCCCCGCAACAACATCGATATTAGAAAATGCTACCGCGTCTTGTCA
TTATCTTCCCACCCACTTTCCTTTATCAATTCTCTCTCTCTCTCTACTTT
TTCTTTTTTGTTCATTTTCTCACGTTGACTCGAAAACCAAACCCACTCCA
GCAGGGGCCGCGTTCTCCTGCATCGCGGCCTGCGAATGCCGGTGCTCTCC
TTCGTACGTCACAATCAGCATCGTTGGATCGTCTGGTGCCCTCTCCACGT
GTTTCCTGGCTGGGCACCCTCTCATTGTACTGCACTTGTAATAGCCGCGT
GGGTATGGTGAGCCCTTGATCGGCTTTTGACCATACTTCCTCCAAGAATA
CTCGTCCGGTGGAATATCGGCTATTTTTGAACTAATCGCCGGCACTCTAA
TAGTTTTCTTTACTCGGTTTTTCCTTCTCTTAGAGCAGTGACACTTGTTG
TTGCCAGAGGTGGAGCCGGAGAACTTGCCGGAAAGATCATCGGAATGATC
TTTATGATCTTGACACCTCTTCTTGTAAGGCTGAGCCGCGAGCGGCGGCT
TTCCAGCGGAAACAGCAGGAGCTTGTGGCGCCAGGAAGATCGAAGATCCT
CCTTTGCTCCCGTTCGAAACGCTGCCGTCTC
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