CX296876

Overview
NameCX296876
Unique NameCX296876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296876_ssr181 microsatellite CX296876_ssr181:181..194. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296876_ssr27 microsatellite CX296876_ssr27:27..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig721 contig Ccv1_Contig721:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK43_ARATH (Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = -3
Query:  253 ADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAP 471
            ADI  D Y WRKYGQK +K S YPR YY+C T   C  +K V+R   + +++  TYEG H H    + +   P
Sbjct:   26 ADILDDGYRWRKYGQKSVKNSLYPRSYYRC-TQHMCNVKKQVQRLSKETSIVETTYEGIHNHPCEELMQTLTP 97          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK30_ARATH (Probable WRKY transcription factor 30 OS=Arabidopsis thaliana GN=WRKY30 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = -3
Query:  274 VPAISSKIADIP--------PDEYSWRKYGQKPIKGSPYPRGYYKCS--TMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAA 495
            +P  SSK+   P         D +SWRKYGQK I G+ +PRGYY+C+    +GC A K V+R+ ++  +L ++Y G H  SQAA
Sbjct:   93 MPRWSSKVRIAPGAGVDRTLDDGFSWRKYGQKDILGAKFPRGYYRCTYRKSQGCEATKQVQRSDENQMLLEISYRGIHSCSQAA 176          
BLAST of CX296876 vs. ExPASy Swiss-Prot
Match: WRK51_ARATH (Probable WRKY transcription factor 51 OS=Arabidopsis thaliana GN=WRKY51 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = -3
Query:  286 SDDLSGKFSGSTSGNN-----KCHCSKRRKNRVKKT-IRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 594
            S+  +G+  GS S          +   +  ++ K+T  RV   +    D+  D + WRKYG+K +K +   R YYKCS+  GC  +K VER  DD   +I TYEG H H
Sbjct:   59 SETFTGESGGSGSATTLSKKESTNRGSKESDQTKETGHRVAFRTRSKIDVMDDGFKWRKYGKKSVKNNINKRNYYKCSS-EGCSVKKRVERDGDDAAYVITTYEGVHNH 166          
The following BLAST results are available for this feature:
BLAST of CX296876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
WRK43_ARATH1.822e-1143.84Probable WRKY transcription factor 43 OS=Arabidops... [more]
WRK30_ARATH1.822e-1142.86Probable WRKY transcription factor 30 OS=Arabidops... [more]
WRK51_ARATH3.108e-1135.78Probable WRKY transcription factor 51 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803G09SK FerrChloL1 Citrus clementina cDNA clone C05803G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296876 ID=CX296876; Name=CX296876; organism=Citrus clementina; type=EST; length=731bp
GAGGCATATCTCTACCGAATGACAATTTAATTAATTAATTAATTTTTTTT
TAAATTTTACTCCAACAAAATTTACATTAATACCCTCCATCCGACCTTCC
ATCGGCCCCGCAACAACATCGATATTAGAAAATGCTACCGCGTCTTGTCA
TTATCTTCCCACCCACTTTCCTTTATCAATTCTCTCTCTCTCTCTACTTT
TTCTTTTTTGTTCATTTTCTCACGTTGACTCGAAAACCAAACCCACTCCA
GCAGGGGCCGCGTTCTCCTGCATCGCGGCCTGCGAATGCCGGTGCTCTCC
TTCGTACGTCACAATCAGCATCGTTGGATCGTCTGGTGCCCTCTCCACGT
GTTTCCTGGCTGGGCACCCTCTCATTGTACTGCACTTGTAATAGCCGCGT
GGGTATGGTGAGCCCTTGATCGGCTTTTGACCATACTTCCTCCAAGAATA
CTCGTCCGGTGGAATATCGGCTATTTTTGAACTAATCGCCGGCACTCTAA
TAGTTTTCTTTACTCGGTTTTTCCTTCTCTTAGAGCAGTGACACTTGTTG
TTGCCAGAGGTGGAGCCGGAGAACTTGCCGGAAAGATCATCGGAATGATC
TTTATGATCTTGACACCTCTTCTTGTAAGGCTGAGCCGCGAGCGGCGGCT
TTCCAGCGGAAACAGCAGGAGCTTGTGGCGCCAGGAAGATCGAAGATCCT
CCTTTGCTCCCGTTCGAAACGCTGCCGTCTC
back to top