CX296878

Overview
NameCX296878
Unique NameCX296878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig722 contig Ccv1_Contig722:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.204e-47
Identity = 86/116 (74.14%), Postives = 102/116 (87.93%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            +FAELY FKWT+LLIPPTT+LI+N++G+VAGVS AIN+G ++WGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV++WS+LLASIFSLLWVR+DPFT    +     QCGINC
Sbjct:  941 EFAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFTI-KARGPDVRQCGINC 1055          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.910e-47
Identity = 88/120 (73.33%), Postives = 104/120 (86.67%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG----QCGINC 749
            +F+ELY FKWT+LLIPPTT+L++N +G+VAGVS AIN+GY+SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVR+DPF      A +NG    +CG++C
Sbjct:  977 EFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFL-----AKNNGPLLEECGLDC 1091          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.866e-46
Identity = 87/120 (72.50%), Postives = 104/120 (86.67%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG----QCGINC 749
            +F+ELY FKWT+LLIPPTT+L++N +G+VAGVS AIN+GY+SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVR+DPF      A ++G    +CG++C
Sbjct:  977 EFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFL-----AKNDGPLLEECGLDC 1091          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.866e-46
Identity = 87/120 (72.50%), Postives = 104/120 (86.67%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG----QCGINC 749
            +F+ELY FKWT+LLIPPTT+L++N +G+VAGVS AIN+GY+SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVR+DPF      A ++G    +CG++C
Sbjct:  977 EFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFL-----AKNDGPLLEECGLDC 1091          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.866e-46
Identity = 87/120 (72.50%), Postives = 104/120 (86.67%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG----QCGINC 749
            +F+ELY FKWT+LLIPPTT+L++N +G+VAGVS AIN+GY+SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVR+DPF      A ++G    +CG++C
Sbjct:  978 EFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFL-----AKNDGPLLEECGLDC 1092          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.429e-46
Identity = 84/116 (72.41%), Postives = 101/116 (87.07%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            +F +LY+FKWT+LLIPPTT++I+N+VG+VAGVS AIN+GY SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV++WSILLASIFSL+WVR+DPF    T      QCG++C
Sbjct:  935 EFGDLYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPLLK-QCGVDC 1049          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.063e-45
Identity = 78/116 (67.24%), Postives = 99/116 (85.34%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            +F ELYVFKWT++LIPPT++L++NLVG+VAG S A+NSGY+SWGPLFGK+FFA+WVI HLYPFLKGL+GRQNRTPTIV++WS+LLAS+FSLLWV++DPF        +N     +C
Sbjct:  874 EFGELYVFKWTTVLIPPTSILVLNLVGVVAGFSDALNSGYESWGPLFGKVFFAMWVIMHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLLWVKIDPFIGSSETTTTNSCANFDC 989          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 2.063e-45
Identity = 78/116 (67.24%), Postives = 99/116 (85.34%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            +F ELYVFKWT++LIPPT++L++NLVG+VAG S A+NSGY+SWGPLFGK+FFA+WVI HLYPFLKGL+GRQNRTPTIV++WS+LLAS+FSLLWV++DPF        +N     +C
Sbjct:  874 EFGELYVFKWTTVLIPPTSILVLNLVGVVAGFSDALNSGYESWGPLFGKVFFAMWVIMHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLLWVKIDPFIGSSETTTTNSCANFDC 989          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.840e-45
Identity = 82/115 (71.30%), Postives = 99/115 (86.09%), Query Frame = -1
Query:  402 FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 746
            F ELY+FKWT+LL+PPTT++I+N+VGIVAGVS A+N+GY SWGPLFGKLFF+ WVI HLYPFLKGL+GRQNRTPTIV++WSILLASIFSL+WVR+DPF     K      CG++C
Sbjct:  950 FGELYLFKWTTLLVPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVILHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFI-PKPKGPVLKPCGVSC 1063          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.337e-44
Identity = 81/116 (69.83%), Postives = 100/116 (86.21%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            +F+ELY+FKWTSLLIPPTT+LI+N+VG++ GVS AIN+GY SWGPLFG+LFFA+WVI HLYPFLKGLLG+Q+R PTI++VWSILLASI +LLWVRV+PF S D        CG++C
Sbjct:  973 EFSELYIFKWTSLLIPPTTLLIINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVWSILLASILTLLWVRVNPFVSKDGPVLE--ICGLDC 1086          
The following BLAST results are available for this feature:
BLAST of CX296878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CESA9_ORYSI2.204e-4774.14Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA6_ORYSJ4.910e-4773.33Probable cellulose synthase A catalytic subunit 6 ... [more]
CESA5_ORYSJ1.866e-4672.50Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI1.866e-4672.50Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA3_ORYSJ1.866e-4672.50Probable cellulose synthase A catalytic subunit 3 ... [more]
CESA4_ARATH5.429e-4672.41Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSJ2.063e-4567.24Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI2.063e-4567.24Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA7_ORYSJ7.840e-4571.30Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA9_ARATH1.337e-4469.83Probable cellulose synthase A catalytic subunit 9 ... [more]

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Properties
Property NameValue
Genbank descriptionC05803G11SK FerrChloL1 Citrus clementina cDNA clone C05803G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296878 ID=CX296878; Name=CX296878; organism=Citrus clementina; type=EST; length=758bp
TTTACTGCAGAATGGAACATTTCTTTTTTTTTTTCACAAACAGAGGATTA
CATTGTTTCTTAGCGCTCTGAACTTGAGAAAATGGAGCTTCACAATTTAG
GTCCAACACAACTAAACAAGTAGGGACCAACACCAAGCACCTGTATGGAA
GTTACAAAACGATATAAGAATAAATATTAAATAAGATACAAAAAGGGTTT
TACTAAAGCCTTAAGTCCTCCTTAGTAGGCTCCACGACAAATGAAAAGAT
CCCATATCATCAATCTCCTTTCTCCAGACCGACGAGAAGTAAATTAACTT
ACGATCATTTCCCAATGACATAATTTCTTCTTATATACACTGATGAGAGC
TTGAAGGAAGAATGGCATTTGAGGCCACAAATAATCATCCAACATGCACT
AGCAATTGATGCCACATTGACCGTTTGAATTGGCTTTGGTGTCATCAGAG
GTAAAGGGATCAACACGCACCCACAGCAAGGAGAAAATGGAAGCAAGTAG
GATAGACCACACAATGACAATTGTTGGTGTGCGGTTTTGACGACCCAACA
GACCCTTCAGGAAAGGATACAGATGGGCAATGACCCATATGGCAAAGAAT
AGCTTGCCAAAGAGTGGACCCCATGATTGGTAACCACTGTTTATGGCCCA
TGATACACCAGCTACAATACCCACCAAGTTCACAATCAGGACTGTAGTTG
GAGGGATGAGAAGAGATGTCCATTTGAATACATAAAGCTCTGCAAAATCT
CATCATCA
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