CX296878

Overview
NameCX296878
Unique NameCX296878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig722 contig Ccv1_Contig722:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.302e-43
Identity = 81/117 (69.23%), Postives = 100/117 (85.47%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTS-DDTKANSNGQCGINC 749
            +F ELY+ KWT+LLIPPT++LI+NLVG+VAG S A+N GY++WGPLFGK+FFA WVI HLYPFLKGL+GRQNRTPTIVI+WSILLAS+FSL+WVR++PF S  DT + S     I+C
Sbjct:  869 EFGELYIVKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILLASVFSLVWVRINPFVSKTDTTSLSLNCLLIDC 985          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.642e-42
Identity = 75/115 (65.22%), Postives = 98/115 (85.22%), Query Frame = -1
Query:  402 FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 746
            F+ELY+FKWT+LLIPPTT+LI+N++G++ GVS AI++GY SWGPLFG+LFFA+WVI HLYPFLKG+LG+Q++ PTI++VWSILLASI +LLWVRV+PF +          CG+NC
Sbjct:  970 FSELYIFKWTTLLIPPTTLLIINIIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVWSILLASILTLLWVRVNPFVAKGGPVLE--ICGLNC 1082          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 6.212e-42
Identity = 76/116 (65.52%), Postives = 98/116 (84.48%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            +F+ELY+FKWTSLLIPPTT+LI+N++G++ G+S AI++GY SWGPLFG+LFFA WVI HLYPFLKGLLG+Q+R PTI++VWSILLASI +LLWVRV+PF +          CG++C
Sbjct:  955 EFSELYIFKWTSLLIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVAKGGPILE--ICGLDC 1068          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 4.026e-41
Identity = 75/116 (64.66%), Postives = 98/116 (84.48%), Query Frame = -1
Query:  402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749
            +F++LY+FKWTSLLIPP T+LI+N++G++ GVS AI++GY SWGPLFG+LFFA+WVI HLYPFLKGLLG+Q+R PTI++VWSILLASI +LLWVRV+PF +          CG++C
Sbjct:  970 EFSDLYLFKWTSLLIPPMTLLIINVIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLASILTLLWVRVNPFVAKGGPILE--ICGLDC 1083          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.755e-28
Identity = 60/113 (53.10%), Postives = 75/113 (66.37%), Query Frame = -1
Query:  411 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 749
            +FAELY  KWTSL+IPP T++++NLV I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLW+ + P       A +N Q G
Sbjct: 1014 EFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP-----PSAQANSQLG 1121          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.755e-28
Identity = 60/113 (53.10%), Postives = 75/113 (66.37%), Query Frame = -1
Query:  411 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 749
            +FAELY  KWTSL+IPP T++++NLV I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLW+ + P       A +N Q G
Sbjct: 1014 EFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP-----PSAQANSQLG 1121          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.993e-28
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = -1
Query:  456 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 749
            +FA+LY+ KWTSL+IPP T+++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLWV ++P
Sbjct: 1034 EFADLYIVKWTSLMIPPITIMMVNLIAIAVGFSRTIYSVIPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINP 1131          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.993e-28
Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = -1
Query:  456 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 749
            +FA+LY+ KWTSL+IPP  +++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS LLA   SLLWV ++P
Sbjct: 1059 EFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINP 1156          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.993e-28
Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = -1
Query:  456 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 749
            +FA+LY+ KWTSL+IPP  +++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS LLA   SLLWV ++P
Sbjct: 1059 EFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINP 1156          
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.105e-28
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = -1
Query:  456 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 749
            +FA+LY+ KWTSL+IPP T+++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLWV ++P
Sbjct: 1034 EFADLYMVKWTSLMIPPITIIMVNLIAIAVGFSRTIYSVVPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINP 1131          
The following BLAST results are available for this feature:
BLAST of CX296878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CESA8_ARATH4.302e-4369.23Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CESA2_ARATH3.642e-4265.22Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA5_ARATH6.212e-4265.52Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA6_ARATH4.026e-4164.66Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CSLD1_ORYSJ1.755e-2853.10Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI1.755e-2853.10Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD3_ARATH2.993e-2857.14Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLD2_ORYSJ2.993e-2857.14Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI2.993e-2857.14Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ARATH5.105e-2857.14Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803G11SK FerrChloL1 Citrus clementina cDNA clone C05803G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296878 ID=CX296878; Name=CX296878; organism=Citrus clementina; type=EST; length=758bp
TTTACTGCAGAATGGAACATTTCTTTTTTTTTTTCACAAACAGAGGATTA
CATTGTTTCTTAGCGCTCTGAACTTGAGAAAATGGAGCTTCACAATTTAG
GTCCAACACAACTAAACAAGTAGGGACCAACACCAAGCACCTGTATGGAA
GTTACAAAACGATATAAGAATAAATATTAAATAAGATACAAAAAGGGTTT
TACTAAAGCCTTAAGTCCTCCTTAGTAGGCTCCACGACAAATGAAAAGAT
CCCATATCATCAATCTCCTTTCTCCAGACCGACGAGAAGTAAATTAACTT
ACGATCATTTCCCAATGACATAATTTCTTCTTATATACACTGATGAGAGC
TTGAAGGAAGAATGGCATTTGAGGCCACAAATAATCATCCAACATGCACT
AGCAATTGATGCCACATTGACCGTTTGAATTGGCTTTGGTGTCATCAGAG
GTAAAGGGATCAACACGCACCCACAGCAAGGAGAAAATGGAAGCAAGTAG
GATAGACCACACAATGACAATTGTTGGTGTGCGGTTTTGACGACCCAACA
GACCCTTCAGGAAAGGATACAGATGGGCAATGACCCATATGGCAAAGAAT
AGCTTGCCAAAGAGTGGACCCCATGATTGGTAACCACTGTTTATGGCCCA
TGATACACCAGCTACAATACCCACCAAGTTCACAATCAGGACTGTAGTTG
GAGGGATGAGAAGAGATGTCCATTTGAATACATAAAGCTCTGCAAAATCT
CATCATCA
back to top