CX296878
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 4.302e-43 Identity = 81/117 (69.23%), Postives = 100/117 (85.47%), Query Frame = -1 Query: 402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTS-DDTKANSNGQCGINC 749 +F ELY+ KWT+LLIPPT++LI+NLVG+VAG S A+N GY++WGPLFGK+FFA WVI HLYPFLKGL+GRQNRTPTIVI+WSILLAS+FSL+WVR++PF S DT + S I+C Sbjct: 869 EFGELYIVKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILLASVFSLVWVRINPFVSKTDTTSLSLNCLLIDC 985
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 3.642e-42 Identity = 75/115 (65.22%), Postives = 98/115 (85.22%), Query Frame = -1 Query: 402 FAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 746 F+ELY+FKWT+LLIPPTT+LI+N++G++ GVS AI++GY SWGPLFG+LFFA+WVI HLYPFLKG+LG+Q++ PTI++VWSILLASI +LLWVRV+PF + CG+NC Sbjct: 970 FSELYIFKWTTLLIPPTTLLIINIIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVWSILLASILTLLWVRVNPFVAKGGPVLE--ICGLNC 1082
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 6.212e-42 Identity = 76/116 (65.52%), Postives = 98/116 (84.48%), Query Frame = -1 Query: 402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749 +F+ELY+FKWTSLLIPPTT+LI+N++G++ G+S AI++GY SWGPLFG+LFFA WVI HLYPFLKGLLG+Q+R PTI++VWSILLASI +LLWVRV+PF + CG++C Sbjct: 955 EFSELYIFKWTSLLIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVAKGGPILE--ICGLDC 1068
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2) HSP 1 Score: 168.318 bits (425), Expect = 4.026e-41 Identity = 75/116 (64.66%), Postives = 98/116 (84.48%), Query Frame = -1 Query: 402 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 749 +F++LY+FKWTSLLIPP T+LI+N++G++ GVS AI++GY SWGPLFG+LFFA+WVI HLYPFLKGLLG+Q+R PTI++VWSILLASI +LLWVRV+PF + CG++C Sbjct: 970 EFSDLYLFKWTSLLIPPMTLLIINVIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLASILTLLWVRVNPFVAKGGPILE--ICGLDC 1083
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.755e-28 Identity = 60/113 (53.10%), Postives = 75/113 (66.37%), Query Frame = -1 Query: 411 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 749 +FAELY KWTSL+IPP T++++NLV I G S I S W L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A SLLW+ + P A +N Q G Sbjct: 1014 EFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP-----PSAQANSQLG 1121
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 1.755e-28 Identity = 60/113 (53.10%), Postives = 75/113 (66.37%), Query Frame = -1 Query: 411 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 749 +FAELY KWTSL+IPP T++++NLV I G S I S W L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A SLLW+ + P A +N Q G Sbjct: 1014 EFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP-----PSAQANSQLG 1121
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.993e-28 Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = -1 Query: 456 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 749 +FA+LY+ KWTSL+IPP T+++VNL+ I G S I S W L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A SLLWV ++P Sbjct: 1034 EFADLYIVKWTSLMIPPITIMMVNLIAIAVGFSRTIYSVIPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINP 1131
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.993e-28 Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = -1 Query: 456 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 749 +FA+LY+ KWTSL+IPP +++VNL+ I G S I S W L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS LLA SLLWV ++P Sbjct: 1059 EFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINP 1156
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.993e-28 Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = -1 Query: 456 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 749 +FA+LY+ KWTSL+IPP +++VNL+ I G S I S W L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS LLA SLLWV ++P Sbjct: 1059 EFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINP 1156
BLAST of CX296878 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 5.105e-28 Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = -1 Query: 456 DFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 749 +FA+LY+ KWTSL+IPP T+++VNL+ I G S I S W L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A SLLWV ++P Sbjct: 1034 EFADLYMVKWTSLMIPPITIIMVNLIAIAVGFSRTIYSVVPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINP 1131 The following BLAST results are available for this feature:
BLAST of CX296878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296878 ID=CX296878; Name=CX296878; organism=Citrus clementina; type=EST; length=758bpback to top |