CX297491

Overview
NameCX297491
Unique NameCX297491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig594 contig Ccv1_Contig594:233..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_CHICK (Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 SV=3)

HSP 1 Score: 343.584 bits (880), Expect = 6.435e-94
Identity = 158/233 (67.81%), Postives = 191/233 (81.97%), Query Frame = 1
Query:   22 MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSDP 720
            +SKSPNKHNRLYM+ARP  +GLAE ID G +  R + K R++ L+E++ WD   A+KIWCFGP+ TGPN++ D+ KGVQYLNEIKDSVVAGFQWA+KEG L EENMRG+ F+V DV LHADAIHRGGGQ+IPTARR +YA  LTA+PRL+EP+Y+VEIQ PEQ +GGIY VLN+KRGHVFEE Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFP CVFDHW ++  DP
Sbjct:  592 LSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVTEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGVLCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYACVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDP 824          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_CAEEL (Elongation factor 2 OS=Caenorhabditis elegans GN=eft-2 PE=2 SV=4)

HSP 1 Score: 340.502 bits (872), Expect = 5.448e-93
Identity = 158/238 (66.39%), Postives = 198/238 (83.19%), Query Frame = 1
Query:   10 HEAVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSDPL 723
            ++  +SKSPNKHNRL+  A+P+ +GLA+ I+ G +  RD+ KAR+KIL+E++ +D   A+KIWCFGP+ TGPN+++D+ KGVQYLNEIKDSVVAGFQWA++EG L++ENMRG+ F V DV LHADAIHRGGGQ+IPTARRV YAS LTA+PRLLEPVY+VEIQ PE A+GGIY VLN++RGHVFEE Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFP CVFDHW ++  DPL
Sbjct:  582 NQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVNARDEFKARAKILAEKYEYDVTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPL 819          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_BOMMO (Translation elongation factor 2 OS=Bombyx mori GN=tef2 PE=1 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 9.293e-93
Identity = 155/233 (66.52%), Postives = 192/233 (82.40%), Query Frame = 1
Query:   22 MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSDP 720
            +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K R++ L+E++ +D   A+KIWCFGPE TGPN++VD  KGVQYLNEIKDSVVAGFQWA+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA  LTA+PRL+EPVY+ EIQ PE A+GGIY VLN++RGHVFEE Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFP CVFDHW ++  DP
Sbjct:  578 LSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 810          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_SCHPO (Elongation factor 2 OS=Schizosaccharomyces pombe GN=eft1 PE=1 SV=2)

HSP 1 Score: 339.347 bits (869), Expect = 1.214e-92
Identity = 161/234 (68.80%), Postives = 188/234 (80.34%), Query Frame = 1
Query:   22 MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSDPL 723
            +SKSPNKHNR++M A P+ E L+ AI+ G + PRDD K R++I+++EFGWD   A+KIWCFGP+TTG N+VVD  K V YLNEIKDSVVA F WASKEG + EEN+R   F + DVVLHADAIHRGGGQ+IPTARRV+YAS L A P + EPV++VEIQ  E A+GGIYSVLN+KRGHVF E QR GTPLYNIKAYLPV ESFGF+G LR AT+GQAFP  VFDHW  MS DPL
Sbjct:  576 LSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPL 809          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_NEUCR (Elongation factor 2 OS=Neurospora crassa GN=cot-3 PE=3 SV=3)

HSP 1 Score: 338.961 bits (868), Expect = 1.585e-92
Identity = 159/229 (69.43%), Postives = 191/229 (83.41%), Query Frame = 1
Query:   22 MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMM 708
            +SKSPNKHNRLYM A PLEE L  AI+ G+I PRDD KAR++IL+++FGWD   A+KIW FGP+T G N++VD  K VQYLNEIKDSVV+GFQWA++EG + EE MR I F + DV LHADAIHRGGGQ+IPTARRV+YA+ L A+P LLEPV++VEIQ PEQA+GG+Y VL ++RGHVF E QRPGTPL+ IKAYLPV+ESFGF+G LRAATSGQAFP  VFDHW+ +
Sbjct:  577 LSKSPNKHNRLYMVAEPLEEDLCLAIEAGKITPRDDFKARARILADDFGWDVTDARKIWAFGPDTNGANLLVDQTKAVQYLNEIKDSVVSGFQWATREGPIGEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATLLAEPSLLEPVFLVEIQVPEQAMGGVYGVLTRRRGHVFGEEQRPGTPLFTIKAYLPVMESFGFNGDLRAATSGQAFPQSVFDHWERL 805          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_CRYPV (Elongation factor 2 OS=Cryptosporidium parvum PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.305e-90
Identity = 149/240 (62.08%), Postives = 192/240 (80.00%), Query Frame = 1
Query:    4 IRHEAVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSDPL 723
            + ++  +SKSPNKHNRLYM A PL +GL + I++G++ PRDDPK RS +L +++G+DK+ A KIWCFGPETTGPN++VD+  G+QYL EIKD   + FQWA+KEG L EE+MRGI F + DV LHADAIHRG GQ+ PT RRV+YA+ LTA PRLLEP+++VEI AP++ +GGIY+ LNQ+RGHVF E  + GTP   IKAYLPV +SF F+  LRAATSG+AFP CVFDHW++++ DPL
Sbjct:  560 LSNQTCLSKSPNKHNRLYMTAEPLPDGLTDDIEEGKVSPRDDPKERSNLLHDKYGFDKNAAMKIWCFGPETTGPNIMVDVTTGIQYLTEIKDHCNSAFQWATKEGILCEEDMRGIRFNLLDVTLHADAIHRGAGQITPTCRRVMYAAALTASPRLLEPMFLVEISAPQEVVGGIYATLNQRRGHVFHEEPKSGTPQVEIKAYLPVADSFKFTTVLRAATSGKAFPQCVFDHWELINGDPL 799          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster GN=Ef2b PE=1 SV=4)

HSP 1 Score: 330.102 bits (845), Expect = 7.363e-90
Identity = 152/233 (65.24%), Postives = 189/233 (81.12%), Query Frame = 1
Query:   22 MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSDP 720
            +SKSPNKHNRL M+A P+ +GL E ID+G +  +D+ KAR++ LSE++ +D   A+KIWCFGP+ TGPN ++D  K VQYLNEIKDSVVAGFQWASKEG LA+EN+RG+ F + DV LHADAIHRGGGQ+IPT RR +YA+ +TAKPRL+EPVY+ EIQ PE A+GGIY VLN++RGHVFEE Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFP CVFDHW ++  DP
Sbjct:  578 LSKSPNKHNRLLMKALPMPDGLPEDIDNGDVSAKDEFKARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQWASKEGILADENLRGVRFNIYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEENQVVGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 810          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_SACCA (Elongation factor 2 OS=Saccharomyces castellii GN=EFT1 PE=3 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 9.616e-90
Identity = 152/237 (64.14%), Postives = 187/237 (78.90%), Query Frame = 1
Query:   13 EAVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSDPL 723
            +  +SKSPNKHNR+Y++A P+EE ++ AI+ G+I PRDD KAR++++++EFGWD   A+KIWCFGP+  GPN+VVD  K VQYLNEIKDSVVA FQWA+KEG +  E MR +   + DV LHADAIHRGGGQ+IPT RR  YA  L A+P++ EPV++VEIQ PE A+GGIYSVLN+KRG V  E QRPGTPL+ +KAYLPV ESFGF+G LR AT GQAFP  VFDHW  + SDPL
Sbjct:  573 QTALSKSPNKHNRIYLKAEPIEEEVSLAIESGKINPRDDLKARARVMADEFGWDVTDARKIWCFGPDGNGPNLVVDQTKAVQYLNEIKDSVVAAFQWATKEGPIFGEQMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLAEPKIQEPVFLVEIQCPESAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWATLGSDPL 809          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_KLULA (Elongation factor 2 OS=Kluyveromyces lactis GN=EFT1 PE=3 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.256e-89
Identity = 151/237 (63.71%), Postives = 189/237 (79.75%), Query Frame = 1
Query:   13 EAVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSDPL 723
            +  +SKSPNKHNR+Y++A+P++E ++ AI+ G+I PRDD KAR++I+++EFGWD   A+KIWCFGP+  GPN+VVD  K VQYLNEIKDSVVA FQWA+KEG +  E MR +   + DV LHADAIHRGGGQ+IPT RR  YA  L A+P++ EPV++VEIQ PEQA+GGIYSVLN+KRG V  E QRPGTPL+ +KAYLP+ ESFGF+G LR AT GQAFP  VFDHW  + +DPL
Sbjct:  573 QTALSKSPNKHNRIYLKAQPIDEEVSLAIEGGKINPRDDFKARARIMADEFGWDVTDARKIWCFGPDGNGPNLVVDQTKAVQYLNEIKDSVVAAFQWATKEGPIFGEQMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLAEPKIQEPVFLVEIQCPEQAIGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPINESFGFTGELRQATGGQAFPQMVFDHWATLGTDPL 809          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_SACKL (Elongation factor 2 OS=Saccharomyces kluyveri GN=EFT2 PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.798e-89
Identity = 151/237 (63.71%), Postives = 188/237 (79.32%), Query Frame = 1
Query:   13 EAVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSDPL 723
            +  +SKSPNKHNR+Y++A P++E ++ AI+ G+I PRDD KAR+++++++FGWD   A+KIWCFGP+  GPN+VVD  K VQYLNEIKDSVVA FQWASKEG +  E MR +   + DV LHADAIHRGGGQ+IPT RR  YA  L A+P++ EPV++VEIQ PEQA+GGIYSVLN+KRG V  E QRPGTPL+ +KAYLPV ESFGF+G LR AT GQAFP  VFDHW  + +DPL
Sbjct:  573 QVALSKSPNKHNRIYLKAEPIDEEVSLAIEAGKINPRDDFKARARVMADDFGWDVTDARKIWCFGPDGNGPNLVVDQTKAVQYLNEIKDSVVAAFQWASKEGPIFGEQMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLAEPKIQEPVFLVEIQCPEQAVGGIYSVLNRKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWATLGTDPL 809          
The following BLAST results are available for this feature:
BLAST of CX297491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
EF2_CHICK6.435e-9467.81Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 ... [more]
EF2_CAEEL5.448e-9366.39Elongation factor 2 OS=Caenorhabditis elegans GN=e... [more]
EF2_BOMMO9.293e-9366.52Translation elongation factor 2 OS=Bombyx mori GN=... [more]
EF2_SCHPO1.214e-9268.80Elongation factor 2 OS=Schizosaccharomyces pombe G... [more]
EF2_NEUCR1.585e-9269.43Elongation factor 2 OS=Neurospora crassa GN=cot-3 ... [more]
EF2_CRYPV3.305e-9062.08Elongation factor 2 OS=Cryptosporidium parvum PE=3... [more]
EF2_DROME7.363e-9065.24Elongation factor 2 OS=Drosophila melanogaster GN=... [more]
EF2_SACCA9.616e-9064.14Elongation factor 2 OS=Saccharomyces castellii GN=... [more]
EF2_KLULA1.256e-8963.71Elongation factor 2 OS=Kluyveromyces lactis GN=EFT... [more]
EF2_SACKL2.798e-8963.71Elongation factor 2 OS=Saccharomyces kluyveri GN=E... [more]

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Properties
Property NameValue
Genbank descriptionC06002A10SK RindPdig24 Citrus clementina cDNA clone C06002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297491 ID=CX297491; Name=CX297491; organism=Citrus clementina; type=EST; length=725bp
CGAATTCGGCACGAGGCTGTGATGAGTAAGTCTCCCAACAAGCATAATCG
TCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTGCTGAGGCCATAG
ATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCTCGATCTAAGATC
TTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAAGAAGATTTGGTG
TTTTGGTCCTGAGACCACTGGCCCTAACATGGTCGTTGATATGTGTAAGG
GAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTTGCTGGTTTCCAG
TGGGCATCGAAAGAAGGTGCGCTGGCTGAAGAGAACATGAGAGGTATCTG
CTTTGAAGTATGTGATGTTGTTCTTCACGCTGATGCCATTCACAGAGGTG
GTGGTCAAGTCATTCCTACTGCTAGGAGGGTCATATATGCTTCCCAGCTC
ACAGCCAAGCCCAGGCTTCTTGAGCCTGTCTACATGGTCGAAATACAGGC
TCCCGAGCAGGCCCTTGGTGGTATTTACAGTGTTCTCAATCAGAAACGTG
GTCACGTGTTCGAGGAAATGCAGAGACCTGGTACCCCCCTTTACAACATC
AAGGCTTACCTTCCCGTCATCGAGTCCTTTGGATTCTCAGGCACTTTGAG
GGCTGCAACGTCAGGACAGGCCTTCCCCACATGTGTGTTTGATCACTGGG
ACATGATGTCATCCGATCCACTGGA
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