CX297491

Overview
NameCX297491
Unique NameCX297491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig594 contig Ccv1_Contig594:233..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_SULIL (Elongation factor 2 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=fusA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.320e-41
Identity = 89/233 (38.20%), Postives = 130/233 (55.79%), Query Frame = 1
Query:    1 RIRHEAVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHW 699
            R + +    KSPNKHN+ Y+   PL +   E I +G I    D K  +KIL +E  WD D AK+I          N+ VD+  GVQ+L E+ D+V+ GF+ A KEG LA E +RG+   + D V+H D  HRG  Q+ P  R  I+A  LT++P LLEP+  ++I+ P   +G + +V+ +KRG + +  Q     +  I A +PV ES+  +  LR +T G+AF    F  W
Sbjct:  476 RAKSQVFEGKSPNKHNKFYLSVEPLNDKTIELISNGTIREDMDSKEMAKILRDEASWDYDEAKRIIAIDENV---NVFVDLTSGVQHLREVMDTVLQGFRLAMKEGPLAHEPIRGVKVILHDAVIHEDPAHRGPAQIYPAVRNSIFAGFLTSRPTLLEPIQKLDIRVPADLIGNVTAVITRKRGKILDVSQIAN--MSRITAEIPVSESYDMASELRGSTGGRAFWGTEFSRW 703          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_SULIK (Elongation factor 2 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=fusA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.320e-41
Identity = 89/233 (38.20%), Postives = 130/233 (55.79%), Query Frame = 1
Query:    1 RIRHEAVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHW 699
            R + +    KSPNKHN+ Y+   PL +   E I +G I    D K  +KIL +E  WD D AK+I          N+ VD+  GVQ+L E+ D+V+ GF+ A KEG LA E +RG+   + D V+H D  HRG  Q+ P  R  I+A  LT++P LLEP+  ++I+ P   +G + +V+ +KRG + +  Q     +  I A +PV ES+  +  LR +T G+AF    F  W
Sbjct:  476 RAKSQVFEGKSPNKHNKFYLSVEPLNDKTIELISNGTIREDMDSKEMAKILRDEASWDYDEAKRIIAIDENV---NVFVDLTSGVQHLREVMDTVLQGFRLAMKEGPLAHEPIRGVKVILHDAVIHEDPAHRGPAQIYPAVRNSIFAGFLTSRPTLLEPIQKLDIRVPADLIGNVTAVITRKRGKILDVSQIAN--MSRITAEIPVSESYDMASELRGSTGGRAFWGTEFSRW 703          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_SULIA (Elongation factor 2 OS=Sulfolobus islandicus (strain M.16.27) GN=fusA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.320e-41
Identity = 89/233 (38.20%), Postives = 130/233 (55.79%), Query Frame = 1
Query:    1 RIRHEAVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHW 699
            R + +    KSPNKHN+ Y+   PL +   E I +G I    D K  +KIL +E  WD D AK+I          N+ VD+  GVQ+L E+ D+V+ GF+ A KEG LA E +RG+   + D V+H D  HRG  Q+ P  R  I+A  LT++P LLEP+  ++I+ P   +G + +V+ +KRG + +  Q     +  I A +PV ES+  +  LR +T G+AF    F  W
Sbjct:  476 RAKSQVFEGKSPNKHNKFYLSVEPLNDKTIELISNGTIREDMDSKEMAKILRDEASWDYDEAKRIIAIDENV---NVFVDLTSGVQHLREVMDTVLQGFRLAMKEGPLAHEPIRGVKVILHDAVIHEDPAHRGPAQIYPAVRNSIFAGFLTSRPTLLEPIQKLDIRVPADLIGNVTAVITRKRGKILDVSQIAN--MSRITAEIPVSESYDMASELRGSTGGRAFWGTEFSRW 703          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_SULTO (Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA PE=3 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 2.402e-40
Identity = 91/233 (39.06%), Postives = 130/233 (55.79%), Query Frame = 1
Query:    1 RIRHEAVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHW 699
            R + +    KSPNKHN+LY+   PL E   E I +G I    D K  ++IL E+  WD D AKKI          N+ V+   GVQ+L E+ D+++ GF+ A KEG LA E +RG+   + D ++H D  HRG  Q+ P  R  I+A  LT+KP LLEP+  ++I+ P   +G +  V+ +KRG +    Q     +  I A +PV ESF  +  LRAA++G+AF    F  W
Sbjct:  477 RTKSQVFEGKSPNKHNKLYISVEPLNEQTIELIANGTIKEDMDSKEMARILKEQADWDYDEAKKIVAIDENI---NVFVNATSGVQHLREVMDTILQGFRLAMKEGPLAHEPIRGLKVVLHDAIIHEDPAHRGPAQLYPAVRNAIFAGFLTSKPTLLEPLQKLDIRVPMDFVGNVSGVITRKRGKILNMTQMGS--IARITAEIPVSESFELASELRAASAGRAFWGTEFSRW 704          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_METTP (Elongation factor 2 OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=fusA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.097e-40
Identity = 94/218 (43.12%), Postives = 130/218 (59.63%), Query Frame = 1
Query:   19 VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQA 672
            V  KSPN HNR Y+E  PLE G+ E + DG+I  + +   R KIL E  G DK+ A+ +  F     G NM ++M KG+QYL E  + ++ GF+ A   G +  E ++GI  ++ DV LH DA+HRG  QVIP  R+ + A  L A P LLEP+  V IQ P+  +GG  S +  +RG V   M+  G  +  IKA +PV E FGF+G +R+AT G+A
Sbjct:  477 VEGKSPNHHNRFYIEIEPLEPGVIEVLKDGKIDMKMEEVERRKILIEA-GMDKEEARNMVNF----VGTNMFLNMTKGIQYLRETMELILEGFEEAITAGPICREPVQGIKAKLVDVKLHEDAVHRGPAQVIPAVRQAVQAGILMANPTLLEPMQYVFIQVPQDQMGGAMSEIQGRRG-VILSMETEG-DMITIKAKMPVAEMFGFAGAIRSATEGRA 687          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_SULAC (Elongation factor 2 OS=Sulfolobus acidocaldarius GN=fusA PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 5.916e-39
Identity = 91/233 (39.06%), Postives = 132/233 (56.65%), Query Frame = 1
Query:    1 RIRHEAVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHW 699
            R + +    KSPNKHN+LY+   PL     + I +G I    D K  +KIL ++  WD D AKKI          N+ +D   GVQ+L EI D+++ GF+ A KEG LA E +RG+   + D V+H D  HRG  Q+ P  R  I+A  LT+KP LLEP+  ++I+ P + LG + +V+ +KRG V   +Q     +  + A +PV ESF  +  LRA+++G+AF    F  W
Sbjct:  477 RNKSQVFEGKSPNKHNKLYISVEPLNNQTIDLIANGTIKEDMDNKEMAKILRDQAEWDYDEAKKIVAIDENI---NVFIDATSGVQHLREIMDTLLQGFRLAMKEGPLAFEPVRGVKVVLHDAVVHEDPAHRGPAQLYPAVRNAIFAGILTSKPTLLEPLQKLDIRIPMEYLGNVTAVITRKRGKVINVVQTGN--VARVYAEIPVGESFELASELRASSAGRAFWGTEFSRW 704          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_METS5 (Elongation factor 2 OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=fusA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.726e-39
Identity = 88/233 (37.77%), Postives = 133/233 (57.08%), Query Frame = 1
Query:    1 RIRHEAVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHW 699
            R + +    KSPNKHN+ Y+   PL +   E I +G I    D K  +KIL ++  WD D AKKI          N+++D   GVQ+L EI D+++ G++ A +EG LA E +RG+   + D  +H D  HRG  Q+ P  R  I+A+ L +KP LLEP+  ++I+ P + +G + +VL++KRG V   M + G+ +  I A +PV ES+  +  LR +T G+AF    F  W
Sbjct:  476 RNKSQVFEGKSPNKHNKFYISVEPLNDKTIELISNGTIKEDMDSKEMAKILRDQADWDYDEAKKIIAIDENV---NVLIDATSGVQHLREIMDTMLQGYRLAMREGPLAHEPIRGVKVILHDATIHEDPAHRGPAQIYPAVRNAIFAAMLMSKPTLLEPLQKLDIRVPMEFVGNVTAVLSRKRGKVL-NMTQSGS-VARILAEIPVSESYELASDLRGSTGGRAFWGTEFSKW 703          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_METKA (Elongation factor 2 OS=Methanopyrus kandleri GN=fusA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.318e-38
Identity = 86/224 (38.39%), Postives = 129/224 (57.59%), Query Frame = 1
Query:   13 EAVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETT-GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPT 681
            + V  KSPNKHN+ Y+   P+EE + EAI++G+  P +  K   +    E+G D+D AK +     ET  G N  +D   G+QYLNE+ + ++ GF+ A +EG LA+E  RG+   + D  +H D +HRG  QVIP  +R IY   L A   LLEP+  + +  P+  +G +   +  +RG + EE+Q+ G  +  IK   PV E FGF+  +R+AT G+A  T
Sbjct:  998 DEVEGKSPNKHNKFYVTVEPVEEEIVEAIEEGKFNPEEMSKKELEETLMEYGMDRDDAKAV-----ETVKGTNFFLDKTVGLQYLNEVMELLIEGFEEAMEEGPLAKEPCRGVKVSLVDAEIHEDPVHRGPAQVIPAIKRAIYGGMLLADTHLLEPMQYIYVTVPQDYMGAVTKEIQGRRGTI-EEIQQEGDTVI-IKGKAPVAEMFGFANDIRSATEGRAIWT 1214          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.721e-38
Identity = 87/232 (37.50%), Postives = 128/232 (55.17%), Query Frame = 1
Query:   13 EAVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMM 708
            ++ M+KS NKHNR+YM   PL++ + + + D +    D  K  +    E+     D  +KIWC+ PE    N++VD  KG+  +NEIK+ V  GF+ A  +G L  E MRG+ FE+ D VLHADAIHRG  Q++   + +     L A P L EP+Y VEI  P    G + ++L  KRG   +    PG     I   LPV ESF F+  L++ + G+A  +  F H+ ++
Sbjct:  584 DSKMTKSANKHNRIYMTVEPLDQNIVDNLKDVK---SDQAKTMATNFREKLDIRDDWIRKIWCYAPEVNPLNLLVDGTKGISIINEIKEHVNTGFRAAVNDGPLIGEVMRGLKFELKDAVLHADAIHRGINQLLQPVKNLCKGLLLAAGPILYEPIYEVEITTPNDYSGAVTTILLSKRGTAEDFKTLPGNDTTMITGTLPVKESFTFNEDLKSGSRGKAGASMRFSHYSIL 812          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_METJA (Elongation factor 2 OS=Methanocaldococcus jannaschii GN=fusA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.445e-37
Identity = 89/236 (37.71%), Postives = 137/236 (58.05%), Query Frame = 1
Query:   19 VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDP-KARSKILSE--EFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSD 717
            V SKSPNKHN+LY    PLEE + +A  +GRI   D   K   KI+ E  + G D + AK++ C        N++++M +G+ +L+E+K+ ++ GF+ A + G LA E  +G+  ++ D VLH DAIHRG  Q+IP AR  I  + + A P LLEP+  V I  P+  +G     ++ +RG +  +M++ G  +  IKA  PV E FGF+G +R AT G+   +  F  ++ +  D
Sbjct:  479 VESKSPNKHNKLYFVVEPLEESVLQAYKEGRIPDVDTKRKLDDKIVQELIKAGMDPEEAKRVMCIYEG----NVLINMTRGIVHLDEVKELIIQGFKEAMRNGPLAAEKCQGVKVKLMDAVLHEDAIHRGPAQMIPAARFGIRDAMMQANPVLLEPMQFVYINTPQDFMGAAMREISNRRGQIL-DMEQEG-DMAIIKAKCPVAEMFGFAGAIRGATQGRCLWSIEFAGYEKVPRD 708          
The following BLAST results are available for this feature:
BLAST of CX297491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
EF2_SULIL6.320e-4138.20Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIK6.320e-4138.20Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIA6.320e-4138.20Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULTO2.402e-4039.06Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA... [more]
EF2_METTP4.097e-4043.12Elongation factor 2 OS=Methanosaeta thermophila (s... [more]
EF2_SULAC5.916e-3939.06Elongation factor 2 OS=Sulfolobus acidocaldarius G... [more]
EF2_METS57.726e-3937.77Elongation factor 2 OS=Metallosphaera sedula (stra... [more]
EF2_METKA1.318e-3838.39Elongation factor 2 OS=Methanopyrus kandleri GN=fu... [more]
EF2_ENCCU1.721e-3837.50Elongation factor 2 OS=Encephalitozoon cuniculi GN... [more]
EF2_METJA9.445e-3737.71Elongation factor 2 OS=Methanocaldococcus jannasch... [more]

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Properties
Property NameValue
Genbank descriptionC06002A10SK RindPdig24 Citrus clementina cDNA clone C06002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297491 ID=CX297491; Name=CX297491; organism=Citrus clementina; type=EST; length=725bp
CGAATTCGGCACGAGGCTGTGATGAGTAAGTCTCCCAACAAGCATAATCG
TCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTGCTGAGGCCATAG
ATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCTCGATCTAAGATC
TTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAAGAAGATTTGGTG
TTTTGGTCCTGAGACCACTGGCCCTAACATGGTCGTTGATATGTGTAAGG
GAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTTGCTGGTTTCCAG
TGGGCATCGAAAGAAGGTGCGCTGGCTGAAGAGAACATGAGAGGTATCTG
CTTTGAAGTATGTGATGTTGTTCTTCACGCTGATGCCATTCACAGAGGTG
GTGGTCAAGTCATTCCTACTGCTAGGAGGGTCATATATGCTTCCCAGCTC
ACAGCCAAGCCCAGGCTTCTTGAGCCTGTCTACATGGTCGAAATACAGGC
TCCCGAGCAGGCCCTTGGTGGTATTTACAGTGTTCTCAATCAGAAACGTG
GTCACGTGTTCGAGGAAATGCAGAGACCTGGTACCCCCCTTTACAACATC
AAGGCTTACCTTCCCGTCATCGAGTCCTTTGGATTCTCAGGCACTTTGAG
GGCTGCAACGTCAGGACAGGCCTTCCCCACATGTGTGTTTGATCACTGGG
ACATGATGTCATCCGATCCACTGGA
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