CX297491

Overview
NameCX297491
Unique NameCX297491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig594 contig Ccv1_Contig594:233..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_ARCFU (Elongation factor 2 OS=Archaeoglobus fulgidus GN=fusA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.387e-34
Identity = 84/218 (38.53%), Postives = 120/218 (55.05%), Query Frame = 1
Query:   19 VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQA 672
            V  KSPNKHNR Y+   PL E + +   +G +  + D K R ++L E     ++ A        E    N+  D+ KG+QYLNE  + ++ GF+ A + G +A E   GI  ++ D  LH DA+HRG  QVIP  R  I+A+ L AKP LLEP   + I  P+  +G +   +  +RG +  EM+  G  +  I A  PV E FGF+G +R ATSG+A
Sbjct:  475 VEGKSPNKHNRFYIVVEPLPEKVIQMFKEGVVDMKMDKKERRRLLQEAGLTSEEAAG-----AEEYYEGNLFCDVTKGIQYLNETMELILEGFREAMRAGPIAREPCMGIKVKLVDCKLHEDAVHRGPAQVIPAVRSAIFAAILQAKPALLEPYQKIFITVPQDMMGAVTREIQGRRGQIL-EMKTEG-DMVTIIAKAPVKEMFGFAGAIRGATSGKA 685          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_THEGJ (Elongation factor 2 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=fusA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.730e-34
Identity = 89/223 (39.91%), Postives = 124/223 (55.61%), Query Frame = 1
Query:   19 VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRI--GPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPT 681
            V  KSPNKHNR Y+   P+ + + EAI +G I  G   +PK  +K L+E  G D +LAK I     +    NM  D  KG+QYLNE+ D +V GF  A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   LNQ+RG +  +M++ G  +  I    PV E FGF+G +R ATSG+A  T
Sbjct:  476 VEGKSPNKHNRFYITVEPMPDEIYEAIREGIIPEGRPKNPKEVAKKLAE-LGMDYELAKGI----VDVYNGNMFFDNTKGIQYLNEVMDLLVDGFHMAMDEGPLAKEPVMKVIVRLHDAKIHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGAVSRELNQRRGQLI-DMRQEGEVMI-IIGEAPVAEMFGFAGAIRGATSGKALWT 691          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_METM7 (Elongation factor 2 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=fusA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.730e-34
Identity = 83/236 (35.17%), Postives = 131/236 (55.51%), Query Frame = 1
Query:   19 VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK---ARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSD 717
            +  KSPNKHN+LYM A P++E +  A  +G+I   D  K   A  +    E G DKD AKK+          NM+V+M +G+  L+E ++ ++ GF+   + G LA E ++G+   + D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+   +  F  ++ + ++
Sbjct:  480 IEGKSPNKHNKLYMIAEPMDESVYAAYVEGKIHDEDYKKKTTADGEARLVEAGLDKDQAKKVMSI----YNGNMIVNMTRGIVQLDEARELIIEGFKEGVRNGPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERVPAE 709          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_PICTO (Elongation factor 2 OS=Picrophilus torridus GN=fusA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.483e-34
Identity = 84/216 (38.89%), Postives = 122/216 (56.48%), Query Frame = 1
Query:   28 KSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILS--EEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 669
            KSPNKHNR Y +  PL E +  AI DG+I      K +  +++  EE G   D A+ + C      G N+++DM KG+QYL+E  + ++  F  A  +G LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   A   LLEP+  V I  P++ +G + + L Q+RG V E+MQ+ G  +  I A +PV    GF+  +R+AT G+
Sbjct:  479 KSPNKHNRFYFQVEPLPENVVSAILDGKIPEGSKFKDKKAVMANLEEAGLTHDEARGLVCI----YGTNVMLDMTKGIQYLDETMELLIESFNEAMDKGPLANEKVYGLKVSLMDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAGRVLLEPMQKVFISVPQEIMGSVTNELQQRRG-VVEDMQQNGEEI-TIIAKVPVAGMIGFASAIRSATGGK 688          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_METPE (Elongation factor 2 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=fusA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.483e-34
Identity = 83/218 (38.07%), Postives = 118/218 (54.13%), Query Frame = 1
Query:   19 VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQA 672
            +  KSPN+HNR Y+E  PL++ + + I +G +        R  IL    GW+KD AK I     + +  N+ +DM KGVQYLNE  + ++ G   A + G LA+E ++ +   + DV LH DAIHRG  QVIP  R  + A  L A   LLEP+  + I  P   +G   S +  +RG V +      T    +   +PV E FGFSG +R+AT G+A
Sbjct:  478 IEGKSPNRHNRFYVELEPLDQVIVDLIRNGEVSMNQTWIERRDILVAN-GWEKDEAKNI----KDISTTNIFIDMTKGVQYLNETMELILEGLHEALQGGPLADEPVQNMKIRLVDVKLHEDAIHRGPAQVIPAVRSAVKAGILYAGDSLLEPIQKISITVPTDQMGNATSQIQGRRGSVLDITSEGDT--ITVVGRVPVAELFGFSGDIRSATEGRA 688          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_METMT (Elongation factor 2 OS=Methanococcoides methylutens GN=fusA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.483e-34
Identity = 86/219 (39.27%), Postives = 122/219 (55.71%), Query Frame = 1
Query:   19 VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR-DDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQA 672
            V  KSPN+HNR Y+   PLE  + E I +G I  R  + + R K+++   G DKD AK+I     +    N   DM KG+Q+LNE  + V+ GF    K G L++E   G+  ++ D  LH DA+HRG  QVIP +R+ I A+ L A   L EP   V IQ P++ +GG    +  +RG + +      T +   KA  PV E FGF+G +R+AT G+A
Sbjct:  477 VEGKSPNRHNRFYVVVEPLEPEVRELIREGEISMRMPELERREKLIAA--GLDKDEAKRI----ADIFESNAYFDMTKGIQHLNETMELVLEGFVEVMKAGPLSKEPCMGVKVKLMDAKLHEDAVHRGPAQVIPASRQAIQAAMLMADDTLFEPYQKVFIQTPQEQMGGATKEIQGRRGIIIDMTSEGDTTIIESKA--PVSELFGFAGDIRSATEGRA 687          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_THEAC (Elongation factor 2 OS=Thermoplasma acidophilum GN=fusA PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.774e-34
Identity = 84/217 (38.71%), Postives = 123/217 (56.68%), Query Frame = 1
Query:   28 KSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRD---DPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 669
            KSPNKHNR Y E  PL+  + +AI+DG I       D KA  ++L  + G D+D AK + C      G NM+ D+ +G+QYL+E  + ++  F      G LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   AK  LLEPV  V I  P++ +G   + + Q+RG + E+M++ G  + ++ A +PV   FGF+  +R AT G+
Sbjct:  479 KSPNKHNRFYFEVEPLKPEVIQAIEDGDIPQGSKFKDKKALVELLVSK-GIDRDEAKGLVC----VEGTNMMFDVTRGIQYLDETMELLIEAFVEVMNRGPLANEKVFGVKARLVDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAKRVLLEPVQRVFINVPQEEMGAAINEIQQRRG-IIEDMKQEGDEI-SLTAKVPVAGMFGFASAIRGATGGK 688          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_METMA (Elongation factor 2 OS=Methanosarcina mazei GN=fusA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.774e-34
Identity = 90/238 (37.82%), Postives = 129/238 (54.20%), Query Frame = 1
Query:   13 EAVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR-DDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSDPL 723
            E +  KSPN+HNR Y+   PL+  +  AI +G I     + + R K++  E G DK+ AK I          N+ +D  KG+QYLNE  + V+ GF+   + G L  E +  +   + D  LH DAIHRG  Q+IP +R+ I A  L A+  LLEP   V +Q P+  +GG    L  +RG V   M   G  L  I+A +PV E FGF+G +R+AT G+A  +  F  +D++ S  L
Sbjct:  475 EPIEGKSPNRHNRFYISVEPLDLEIVSAIKEGEITMNMPELERRQKLI--ELGMDKEQAKGI----AGIFNSNIFIDQTKGIQYLNETMELVLDGFEEVMRAGPLTREPVANVKCVLVDAKLHEDAIHRGPAQIIPASRQAIQAGMLMAEDSLLEPYQKVFVQVPQLLMGGATKELQGRRG-VILNMTTEG-DLAIIEARVPVAEMFGFAGEIRSATEGRAMWSTEFGGFDVVPSSIL 704          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_METMP (Elongation factor 2 OS=Methanococcus maripaludis GN=fusA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.276e-33
Identity = 82/236 (34.75%), Postives = 131/236 (55.51%), Query Frame = 1
Query:   19 VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK---ARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSD 717
            +  KSPNKHN+LYM A P+EE +  A  +G++   D  K   A  +    E G +KD AKK+          NM+V+M +G+  L+E ++ ++ GF+   + G LA E ++G+   + D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+   +  F  ++ + ++
Sbjct:  480 IEGKSPNKHNKLYMIAEPMEESVYAAYVEGKLHDEDYKKKTTADGEARLVEAGLEKDQAKKVMSI----YNGNMIVNMTRGIVQLDEARELIIEGFKEGVRNGPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERVPNE 709          
BLAST of CX297491 vs. ExPASy Swiss-Prot
Match: EF2_METM5 (Elongation factor 2 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=fusA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.667e-33
Identity = 82/236 (34.75%), Postives = 131/236 (55.51%), Query Frame = 1
Query:   19 VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK---ARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPTCVFDHWDMMSSD 717
            +  KSPNKHN+LYM A P+EE +  A  +G++   D  K   A  +    E G +KD AKK+          NM+V+M +G+  L+E ++ ++ GF+   + G LA E ++G+  ++ D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+   +  F  ++ +  +
Sbjct:  480 IEGKSPNKHNKLYMIAEPMEESVYAAYVEGKLHDEDYKKKTTADGEARLVEAGLEKDQAKKVMSI----YNGNMIVNMTRGIVQLDEARELIIEGFKEGVRNGPLAAEKVQGVKIKLMDATFHEDAIHRGPAQIIPAVRFGVRDAVSQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFEKVPGE 709          
The following BLAST results are available for this feature:
BLAST of CX297491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
EF2_ARCFU4.387e-3438.53Elongation factor 2 OS=Archaeoglobus fulgidus GN=f... [more]
EF2_THEGJ5.730e-3439.91Elongation factor 2 OS=Thermococcus gammatolerans ... [more]
EF2_METM75.730e-3435.17Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_PICTO7.483e-3438.89Elongation factor 2 OS=Picrophilus torridus GN=fus... [more]
EF2_METPE7.483e-3438.07Elongation factor 2 OS=Methanosphaerula palustris ... [more]
EF2_METMT7.483e-3439.27Elongation factor 2 OS=Methanococcoides methyluten... [more]
EF2_THEAC9.774e-3438.71Elongation factor 2 OS=Thermoplasma acidophilum GN... [more]
EF2_METMA9.774e-3437.82Elongation factor 2 OS=Methanosarcina mazei GN=fus... [more]
EF2_METMP1.276e-3334.75Elongation factor 2 OS=Methanococcus maripaludis G... [more]
EF2_METM51.667e-3334.75Elongation factor 2 OS=Methanococcus maripaludis (... [more]

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Properties
Property NameValue
Genbank descriptionC06002A10SK RindPdig24 Citrus clementina cDNA clone C06002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297491 ID=CX297491; Name=CX297491; organism=Citrus clementina; type=EST; length=725bp
CGAATTCGGCACGAGGCTGTGATGAGTAAGTCTCCCAACAAGCATAATCG
TCTCTACATGGAAGCCCGACCTCTGGAAGAAGGTCTTGCTGAGGCCATAG
ATGATGGCCGCATTGGTCCAAGGGATGATCCCAAGGCTCGATCTAAGATC
TTGTCTGAGGAGTTCGGCTGGGACAAGGATCTTGCGAAGAAGATTTGGTG
TTTTGGTCCTGAGACCACTGGCCCTAACATGGTCGTTGATATGTGTAAGG
GAGTTCAATACTTGAATGAAATTAAGGATTCTGTTGTTGCTGGTTTCCAG
TGGGCATCGAAAGAAGGTGCGCTGGCTGAAGAGAACATGAGAGGTATCTG
CTTTGAAGTATGTGATGTTGTTCTTCACGCTGATGCCATTCACAGAGGTG
GTGGTCAAGTCATTCCTACTGCTAGGAGGGTCATATATGCTTCCCAGCTC
ACAGCCAAGCCCAGGCTTCTTGAGCCTGTCTACATGGTCGAAATACAGGC
TCCCGAGCAGGCCCTTGGTGGTATTTACAGTGTTCTCAATCAGAAACGTG
GTCACGTGTTCGAGGAAATGCAGAGACCTGGTACCCCCCTTTACAACATC
AAGGCTTACCTTCCCGTCATCGAGTCCTTTGGATTCTCAGGCACTTTGAG
GGCTGCAACGTCAGGACAGGCCTTCCCCACATGTGTGTTTGATCACTGGG
ACATGATGTCATCCGATCCACTGGA
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