CX297498

Overview
NameCX297498
Unique NameCX297498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.471e-48
Identity = 110/202 (54.46%), Postives = 132/202 (65.35%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNL--FSKVLLPLPWSIRMKIAFGAAKGLAFLHEA-EKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLT 695
            FT+ EL   T NFR D  L       V+KG I     E L  V VA+K  D  N  QG RE++ EV+ L    HPNLVKLIG+C E + R+L+YE+M +GS+E++L        PL W+ RMKIA GAA+GL +LH+    PVIYRD K SNILL  DY   LSDFGLAK GP GDK+HVSTR+MGTYGY AP+Y MTG LT
Sbjct:   91 FTFQELAEATGNFRSDCFLGEGGFGKVFKGTI-----EKLDQV-VAIKQLDR-NGVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPQGSLEDHLHVLPSGKKPLDWNTRMKIAAGAARGLEYLHDRMTPPVIYRDLKCSNILLGEDYQPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLT 285          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 4.760e-38
Identity = 86/204 (42.16%), Postives = 125/204 (61.27%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKV--LLPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            +T  EL   T    ++ V+       VY+G +++  +       VAVK +  +N  Q  +E+  EV  +G + H NLV+L+GYC E  +R+L+Y+F+  G++E  +   V  + PL W IRM I  G AKGLA+LHE  +P V++RD K+SNILLD  +NA +SDFGLAK     + S+V+TR+MGT+GY APEY  TG L  +
Sbjct:  142 YTLRELEAATNGLCEENVIGEGGYGIVYRGILTDGTK-------VAVK-NLLNNRGQAEKEFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYDFVDNGNLEQWIHGDVGDVSPLTWDIRMNIILGMAKGLAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAK-LLGSESSYVTTRVMGTFGYVAPEYACTGMLNEK 336          

HSP 2 Score: 28.8758 bits (63), Expect = 4.760e-38
Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G  N +SD+YSFG++++EI
Sbjct:  331 GMLNEKSDIYSFGILIMEI 349          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.799e-37
Identity = 91/202 (45.05%), Postives = 123/202 (60.89%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLH-EAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            FTY EL+  T +F     L       VYKG ++ D RE      VAVK+     S QG  +++AE++ +  + H NLVKL G C E EHR+L+YE++  GS++  LF +  L L WS R +I  G A+GL +LH EA   +++RD K SNILLD+     +SDFGLAK   +  K+H+STR+ GT GY APEY M GHLT +
Sbjct:  681 FTYSELKSATQDFDPSNKLGEGGFGPVYKGKLN-DGRE------VAVKLLSV-GSRQGKGQFVAEIVAISAVQHRNLVKLYGCCYEGEHRLLVYEYLPNGSLDQALFGEKTLHLDWSTRYEICLGVARGLVYLHEEARLRIVHRDVKASNILLDSKLVPKVSDFGLAK-LYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEK 873          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.656e-37
Identity = 83/193 (43.01%), Postives = 118/193 (61.14%), Query Frame = 3
Query:  126 TANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAE-KPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            T NF + R +       VYKG    +L +G +   VAVK      S QG  E+  E+  L    H +LV LIGYC E+   +LIYE+M  G+V+++L+   L  L W  R++I  GAA+GL +LH  + KPVI+RD K++NILLD ++ A ++DFGL+K GPE D++HVST + G++GY  PEY     LT +
Sbjct:  482 TNNFDESRNIGVGGFGKVYKG----ELNDGTK---VAVK-RGNPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMENGTVKSHLYGSGLPSLTWKQRLEICIGAARGLHYLHTGDSKPVIHRDVKSANILLDENFMAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYFRRQQLTDK 666          

HSP 2 Score: 26.9498 bits (58), Expect = 6.656e-37
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYSFGVVL E+
Sbjct:  666 KSDVYSFGVVLFEV 679          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.913e-36
Identity = 82/208 (39.42%), Postives = 122/208 (58.65%), Query Frame = 3
Query:   96 AFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLH-EAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGD-----KSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            +FTY EL + T NF     +       VYKG +            VA+K    + S QG +E+L E+  L  L H NLV L+G+C E+  ++L+YE+M  G++ +N+  K+  PL +++R++IA G+AKG+ +LH EA  P+ +RD K SNILLD+ + A ++DFGL++  P  D       HVST + GT GY  PEY +T  LT +
Sbjct:  612 SFTYAELALATDNFNSSTQIGQGGYGKVYKGTLGSG-------TVVAIK-RAQEGSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEEGEQMLVYEYMENGTLRDNISVKLKEPLDFAMRLRIALGSAKGILYLHTEANPPIFHRDIKASNILLDSRFTAKVADFGLSRLAPVPDMEGISPQHVSTVVKGTPGYLDPEYFLTHQLTDK 811          

HSP 2 Score: 25.7942 bits (55), Expect = 1.913e-36
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYS GVVLLE+
Sbjct:  811 KSDVYSLGVVLLEL 824          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y4245_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g20450 OS=Arabidopsis thaliana GN=At4g20450 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.915e-36
Identity = 85/204 (41.67%), Postives = 128/204 (62.75%), Query Frame = 3
Query:   96 AFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK-VLLPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            ++TY+E+ +IT NF  +R L       VY G ++++ +       VAVKV   ++S QG++++ AEV  L  + H NLV L+GYC E +H VLIYE+M+ G+++ +L  +    PL W  R++IA   A+GL +LH   KP +I+RD K+ NILLD ++ A L DFGL++  P G ++HVST + G+ GY  PEY  T  LT +
Sbjct:  580 SYTYEEVAVITNNF--ERPLGEGGFGVVYHGNVNDNEQ-------VAVKVLS-ESSAQGYKQFKAEVDLLLRVHHINLVTLVGYCDEGQHLVLIYEYMSNGNLKQHLSGENSRSPLSWENRLRIAAETAQGLEYLHIGCKPPMIHRDIKSMNILLDNNFQAKLGDFGLSRSFPVGSETHVSTNVAGSPGYLDPEYYRTNWLTEK 773          

HSP 2 Score: 27.335 bits (59), Expect = 1.915e-36
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDV+SFGVVLLEI
Sbjct:  773 KSDVFSFGVVLLEI 786          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y1357_ARATH (Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.916e-36
Identity = 81/202 (40.10%), Postives = 120/202 (59.41%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            FT  E+R  T NF     +       VY+G    +L +G     +A+K     +S QG  E+  E++ L  L H +LV LIG+C E    +L+YE+MA G++ ++LF   L PL W  R++   G+A+GL +LH  +E+ +I+RD KT+NILLD ++ A +SDFGL+K GP  D +HVST + G++GY  PEY     LT +
Sbjct:  508 FTLAEIRAATKNFDDGLAIGVGGFGKVYRG----ELEDGTL---IAIK-RATPHSQQGLAEFETEIVMLSRLRHRHLVSLIGFCDEHNEMILVYEYMANGTLRSHLFGSNLPPLSWKQRLEACIGSARGLHYLHTGSERGIIHRDVKTTNILLDENFVAKMSDFGLSKAGPSMDHTHVSTAVKGSFGYLDPEYFRRQQLTEK 701          

HSP 2 Score: 25.7942 bits (55), Expect = 1.916e-36
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  698 QSDVYSFGVVLLE 736
            +SDVYSFGVVL E
Sbjct:  701 KSDVYSFGVVLFE 713          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.203e-36
Identity = 90/205 (43.90%), Postives = 118/205 (57.56%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK---VLLPLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            FT  +++  T NF   R +       VYKG +SE          +AVK      S QG+RE++ E+  +  L HPNLVKL G C E    +L+YE++    +   LF K     L L WS R KI  G AKGL FLHE  +  +++RD K SN+LLD D NA +SDFGLAK   +G+ +H+STRI GT GY APEY M G+LT +
Sbjct:  666 FTLRQIKAATDNFDVTRKIGEGGFGSVYKGELSEGKL-------IAVKQLSA-KSRQGNREFVNEIGMISALQHPNLVKLYGCCVEGNQLILVYEYLENNCLSRALFGKDESSRLKLDWSTRKKIFLGIAKGLTFLHEESRIKIVHRDIKASNVLLDKDLNAKISDFGLAKLNDDGN-THISTRIAGTIGYMAPEYAMRGYLTEK 861          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.878e-36
Identity = 90/202 (44.55%), Postives = 121/202 (59.90%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLH-EAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            FTY EL+  T +F     L       VYKG    +L +G     VAVK+     S QG  +++AE++ +  + H NLVKL G C E EHR+L+YE++  GS++  LF    L L WS R +I  G A+GL +LH EA   +++RD K SNILLD+     +SDFGLAK   +  K+H+STR+ GT GY APEY M GHLT +
Sbjct:  682 FTYSELKSATQDFDPSNKLGEGGFGPVYKG----NLNDGRV---VAVKLLSV-GSRQGKGQFVAEIVAISSVLHRNLVKLYGCCFEGEHRMLVYEYLPNGSLDQALFGDKTLHLDWSTRYEICLGVARGLVYLHEEASVRIVHRDVKASNILLDSRLVPQISDFGLAK-LYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEK 874          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 4.229e-36
Identity = 86/207 (41.55%), Postives = 118/207 (57.00%), Query Frame = 3
Query:   90 LIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLF--SKVLLPLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            + +F+  +++I T NF     +       VYKG + +          +AVK      S QG+RE+L E+  +  L HPNLVKL G C E    +L+YEF+   S+   LF   +  L L W  R KI  G A+GLA+LHE  +  +++RD K +N+LLD   N  +SDFGLAK   E D +H+STRI GT+GY APEY M GHLT +
Sbjct:  609 IASFSLRQIKIATNNFDSANRIGEGGFGPVYKGKLFDG-------TIIAVK-QLSTGSKQGNREFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLARALFGPQETQLRLDWPTRRKICIGVARGLAYLHEESRLKIVHRDIKATNVLLDKQLNPKISDFGLAKLDEE-DSTHISTRIAGTFGYMAPEYAMRGHLTDK 806          

HSP 2 Score: 26.5646 bits (57), Expect = 4.229e-36
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G    ++DVYSFG+V LEI
Sbjct:  801 GHLTDKADVYSFGIVALEI 819          
The following BLAST results are available for this feature:
BLAST of CX297498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
RLCK7_ARATH1.471e-4854.46Probable serine/threonine-protein kinase RLCKVII O... [more]
Y1154_ARATH4.760e-3842.16Probable serine/threonine-protein kinase At1g01540... [more]
Y5614_ARATH5.799e-3745.05Probable LRR receptor-like serine/threonine-protei... [more]
HERK_ARATH6.656e-3743.01Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
Y1684_ARATH1.913e-3639.42Probable LRR receptor-like serine/threonine-protei... [more]
Y4245_ARATH1.915e-3641.67Probable LRR receptor-like serine/threonine-protei... [more]
Y1357_ARATH1.916e-3640.10Probable receptor-like protein kinase At1g30570 OS... [more]
Y1765_ARATH2.203e-3643.90Probable LRR receptor-like serine/threonine-protei... [more]
Y1561_ARATH2.878e-3644.55Probable LRR receptor-like serine/threonine-protei... [more]
Y1534_ARATH4.229e-3641.55Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC06002B05SK RindPdig24 Citrus clementina cDNA clone C06002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297498 ID=CX297498; Name=CX297498; organism=Citrus clementina; type=EST; length=745bp
GAATTCGGCACGAGGAAAAGGAATACGGTAAGTTACCATCAAATCCGGAA
GAAGTAGAGGACCTGCGTCGTGATTCGGCTGCAAATCCATTGATTGCATT
CACGTACGATGAACTGAGAATCATCACTGCAAATTTCAGGCAAGATCGTG
TGTTGGGTGGAGGCGGATTTGGATGTGTTTACAAAGGGTTCATTTCTGAG
GACTTAAGGGAAGGGCTTCAGCCTGTTCCAGTGGCTGTTAAGGTTCATGA
TGGTGATAACAGTTATCAAGGCCACCGGGAATGGCTGGCAGAAGTCATAT
TTTTGGGACACCTTTCTCATCCGAATTTGGTTAAGTTGATCGGTTACTGC
TGTGAAGATGAACACCGGGTACTAATATATGAGTTCATGGCTCGGGGTAG
TGTCGAAAACAATCTTTTCTCAAAAGTACTGCTTCCTCTTCCATGGTCTA
TCAGAATGAAGATTGCATTTGGTGCTGCAAAAGGACTGGCCTTCCTTCAT
GAAGCAGAGAAACCTGTCATCTATCGCGACTTTAAGACATCTAATATTCT
CTTAGATACGGACTACAATGCANAGCTCTCGGACTTTGGCCTTGCCAAAG
ATGGACCAGAGGGGGACAAATCTCACGTTTCAACTCGCATAATGGGAACT
TATGGATATGCAGCCCCTGAGTACATAATGACGGGTCATCTAACTCCCAG
AGTGATGTGTACAGCTTTGGTGTCGTGCTTCTTGAGATCTGACAG
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