CX297498

Overview
NameCX297498
Unique NameCX297498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: LRKA3_ARATH (Lectin-domain containing receptor kinase A4.3 OS=Arabidopsis thaliana GN=LECRKA4.3 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.691e-28
Identity = 87/226 (38.50%), Postives = 122/226 (53.98%), Query Frame = 3
Query:   24 YGKLPSNPEEVEDLRRDSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVL---LPLPWSIRMKIAFGAAKGLAFLHEA-EKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGH 689
            Y K     E +ED   D        F Y +L   T  F+++RV+       VY+G I     +      +AVK     NS QG RE++AE+  LG L H NLV L G+C      +LIY+++  GS+++ L+SK       L W+ R +IA G A GL +LHE  E+ VI+RD K SN+L+D+D N  L DFGLA+    G +S  +T ++GT GY APE    G+
Sbjct:  330 YKKRMQQEEILEDWEIDHPHR----FRYRDLYKATEGFKENRVVGTGGFGIVYRGNIRSSSDQ------IAVKKIT-PNSMQGVREFVAEIESLGRLRHKNLVNLQGWCKHRNDLLLIYDYIPNGSLDSLLYSKPRRSGAVLSWNARFQIAKGIASGLLYLHEEWEQIVIHRDVKPSNVLIDSDMNPRLGDFGLARLYERGSQS-CTTVVVGTIGYMAPELARNGN 543          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: CRK39_ARATH (Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.055e-28
Identity = 75/212 (35.38%), Postives = 110/212 (51.89%), Query Frame = 3
Query:   72 DSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPL-PWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            DS    ++ F    +   T  F  +  L       VYKG +       L    VAVK      S QG  E+  EV  L  L H NLVKL+G+C E + ++L+YEF+   S+++ +F      L  W +R +I  G A+GL +LHE ++  +I+RD K SNILLD + N  ++DFG A+     +    + RI GT GY APEY+  G ++ +
Sbjct:  332 DSDGQFMLRFDLGMVLAATDEFSSENTLGQGGFGTVYKGTL-------LNGQEVAVK-RLTKGSGQGDIEFKNEVSLLTRLQHRNLVKLLGFCNEGDEQILVYEFVPNSSLDHFIFDDEKRSLLTWEMRYRIIEGIARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFDSDETRAETKRIAGTRGYMAPEYLNHGQISAK 535          

HSP 2 Score: 30.8018 bits (68), Expect = 2.055e-28
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  677 NDGSSNSQSDVYSFGVVLLEI 739
            N G  +++SDVYSFGV+LLE+
Sbjct:  528 NHGQISAKSDVYSFGVMLLEM 548          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.209e-28
Identity = 75/199 (37.69%), Postives = 115/199 (57.79%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK--VLLPLPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTG 686
            F+  EL++ T +F    +L       VYKG +++          VAVK    + +  G  ++  EV  +    H NL++L G+C     R+L+Y +MA GSV + L  +    LPL WSIR +IA G+A+GL++LH+  +  +I+RD K +NILLD ++ A + DFGLA+     D +HV+T + GT G+ APEY+ TG
Sbjct:  293 FSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGTL-------VAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQLPLAWSIRQQIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLARLMDYKD-THVTTAVRGTIGHIAPEYLSTG 483          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: RPK1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RPK1 OS=Arabidopsis thaliana GN=RPK1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.493e-28
Identity = 66/171 (38.60%), Postives = 98/171 (57.31%), Query Frame = 3
Query:  174 CVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMT 683
            C+  G      +  + P  V          +QG +++ AE+  L  + HPNLV LIGY   +    LIY +++ G++++ +  +    + W +  KIA   A+ L++LHE   P V++RD K SNILLD +YNA LSDFGL+K      +SHV+T + GT+GY APEY MT
Sbjct:  266 CIGHGGFGSTYKAEVSPTNVFAVKRLSVGRFQGDQQFHAEISALEMVRHPNLVMLIGYHASETEMFLIYNYLSGGNLQDFIKERSKAAIEWKVLHKIALDVARALSYLHEQCSPKVLHRDIKPSNILLDNNYNAYLSDFGLSK-LLGTSQSHVTTGVAGTFGYVAPEYAMT 435          

HSP 2 Score: 25.7942 bits (55), Expect = 3.493e-28
Identity = 9/16 (56.25%), Postives = 15/16 (93.75%), Query Frame = 2
Query:  692 NSQSDVYSFGVVLLEI 739
            + ++DVYS+G+VLLE+
Sbjct:  439 SEKADVYSYGIVLLEL 454          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y4291_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.767e-28
Identity = 79/214 (36.92%), Postives = 114/214 (53.27%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKV------------HDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEA-EKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            FTY E+  IT NF  ++V+       VY G     L +G +   +AVK+                +S Q  +E+  E   L  + H NL   +GYC +     LIYE+MA G++++ L S+    L W  R+ IA  +A+GL +LH     P+++RD KT+NILL+ +  A ++DFGL+K  PE D SHV T +MGT GY  PEY  T  L  +
Sbjct:  557 FTYSEVSSITNNF--NKVIGKGGFGIVYLG----SLEDGTE---IAVKMINDSSFGKSKGSSSSSSSSQVSKEFQVEAELLLTVHHRNLASFVGYCDDGRSMALIYEYMANGNLQDYLSSENAEDLSWEKRLHIAIDSAQGLEYLHHGCRPPIVHRDVKTANILLNDNLEAKIADFGLSKVFPEDDLSHVVTAVMGTPGYVDPEYYNTFKLNEK 761          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: SIRK_ARATH (Senescence-induced receptor-like serine/threonine-protein kinase OS=Arabidopsis thaliana GN=SIRK PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.767e-28
Identity = 78/202 (38.61%), Postives = 111/202 (54.95%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            F Y E+  IT NF  +RV+       VY G I+ +         VAVKV   + S QG++E+ AEV  L  + H NL  L+GYC E  H VLIYE+MA  ++ + L  K    L W  R+KI+  AA+GL +LH   K P+++RD K +NILL+    A ++DFGL++         +ST + G+ GY  PEY  T  +  +
Sbjct:  564 FKYSEVVNITNNF--ERVIGKGGFGKVYHGVINGE--------QVAVKVLS-EESAQGYKEFRAEVDLLMRVHHTNLTSLVGYCNEINHMVLIYEYMANENLGDYLAGKRSFILSWEERLKISLDAAQGLEYLHNGCKPPIVHRDVKPTNILLNEKLQAKMADFGLSRSFSVEGSGQISTVVAGSIGYLDPEYYSTRQMNEK 754          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: ERL2_ARATH (LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.509e-28
Identity = 82/232 (35.34%), Postives = 123/232 (53.02%), Query Frame = 3
Query:   18 KEYGKLPSNPEEVEDLRRDSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVK-VHDGDNSYQGH-REWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK-VLLPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            K   K P    ++  L  D A +     T+D++  +T N  +  ++       VYK   S+  R      P+A+K ++   N Y  + RE+  E+  +G + H N+V L GY       +L Y++M  GS+ + L      + L W  R+KIA GAA+GLA+LH    P +I+RD K+SNILLD ++ A LSDFG+AK  P   K++ ST ++GT GY  PEY  T  L  +
Sbjct:  617 KGSSKQPEGSTKLVILHMDMAIH-----TFDDIMRVTENLDEKYIIGYGASSTVYK-CTSKTSR------PIAIKRIY---NQYPSNFREFETELETIGSIRHRNIVSLHGYALSPFGNLLFYDYMENGSLWDLLHGPGKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDGNFEARLSDFGIAKSIP-ATKTYASTYVLGTIGYIDPEYARTSRLNEK 832          

HSP 2 Score: 29.6462 bits (65), Expect = 4.509e-28
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = 2
Query:  692 NSQSDVYSFGVVLLEI 739
            N +SD+YSFG+VLLE+
Sbjct:  830 NEKSDIYSFGIVLLEL 845          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: WAKLE_ARATH (Wall-associated receptor kinase-like 5 OS=Arabidopsis thaliana GN=WAKL5 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.892e-28
Identity = 71/203 (34.98%), Postives = 110/203 (54.19%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKV-LLPLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            F+ +EL+  T NF   RVL       VYKG + +    G        KV D D       +++ E+I L  ++H N+VKLIG C E E  +L+YE++  G +   L  +     + W +R++IA   A  L ++H A   P+ +RD KT+NILLD  Y A +SDFG ++     D++H++T + GT+GY  PEY ++   T +
Sbjct:  420 FSSEELKKATDNFSVKRVLGKGSQGTVYKGMMVD----GKIIAVKRSKVVDEDKL----EKFINEIILLSQINHRNIVKLIGCCLETEVPILVYEYIPNGDMFKRLHDESDDYAMTWEVRLRIAIEIAGALTYMHSAASFPIYHRDIKTTNILLDEKYGAKVSDFGTSR-SVTIDQTHLTTMVAGTFGYMDPEYFLSSQYTDK 613          

HSP 2 Score: 26.9498 bits (58), Expect = 5.892e-28
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYSFGVVL+E+
Sbjct:  613 KSDVYSFGVVLVEL 626          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: WAKLC_ARATH (Wall-associated receptor kinase-like 3 OS=Arabidopsis thaliana GN=WAKL3 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.893e-28
Identity = 72/211 (34.12%), Postives = 111/211 (52.61%), Query Frame = 3
Query:   69 RDSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKV-LLPLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLT 695
            +D +      F+  EL   T NF  DRVL       VYK      L +G        KV D D       E++ E++ L  ++H N+VKL+G C E E  +L+YE++  G +   L  +     + W +R++IA   A  L+++H A   P+ +RD KT+NILLD  Y A +SDFG ++     D++H++T + GT+GY  PEY ++   T
Sbjct:  406 KDGSVEMSKIFSSRELEKATDNFSIDRVLGQGGQGTVYKRM----LVDGSIVAVKRSKVVDEDKM----EEFINEIVLLSQINHRNIVKLLGCCLETEVPILVYEYIPNGDLFKRLHDEYDDYMMTWEVRLRIAVEIAGALSYMHSAASFPIFHRDIKTTNILLDEKYRAKISDFGTSR-SVATDQTHLTTLVAGTFGYMDPEYFLSSQYT 607          

HSP 2 Score: 26.9498 bits (58), Expect = 5.893e-28
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYSFGVVL+E+
Sbjct:  609 KSDVYSFGVVLVEL 622          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: CRK11_ARATH (Cysteine-rich receptor-like protein kinase 11 OS=Arabidopsis thaliana GN=CRK11 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 5.901e-28
Identity = 75/207 (36.23%), Postives = 105/207 (50.72%), Query Frame = 3
Query:   72 DSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFS-KVLLPLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTG 686
            D +    + + +  +   T  F     L       VYKG +S           VAVK      S QG RE+  E + +  L H NLV+L+G+C E E ++LIYEF+   S++  LF  +    L W+ R KI  G A+G+ +LH+  +  +I+RD K SNILLD D N  ++DFGLA           + RI GTY Y +PEY M G
Sbjct:  329 DISTTDSLVYDFKTIEAATNKFSTSNKLGEGGFGAVYKGKLSNG-------TDVAVK-RLSKKSGQGTREFRNEAVLVTKLQHRNLVRLLGFCLEREEQILIYEFVHNKSLDYFLFDPEKQSQLDWTRRYKIIGGIARGILYLHQDSRLKIIHRDLKASNILLDADMNPKIADFGLATIFGVEQTQGNTNRIAGTYAYMSPEYAMHG 527          

HSP 2 Score: 28.1054 bits (61), Expect = 5.901e-28
Identity = 13/26 (50.00%), Postives = 18/26 (69.23%), Query Frame = 2
Query:  662 SP*VHNDGSSNSQSDVYSFGVVLLEI 739
            SP     G  + +SD+YSFGV++LEI
Sbjct:  520 SPEYAMHGQYSMKSDIYSFGVLVLEI 545          
The following BLAST results are available for this feature:
BLAST of CX297498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
LRKA3_ARATH1.691e-2838.50Lectin-domain containing receptor kinase A4.3 OS=A... [more]
CRK39_ARATH2.055e-2835.38Putative cysteine-rich receptor-like protein kinas... [more]
SERK2_ARATH2.209e-2837.69Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
RPK1_ARATH3.493e-2838.60Probable LRR receptor-like serine/threonine-protei... [more]
Y4291_ARATH3.767e-2836.92Probable LRR receptor-like serine/threonine-protei... [more]
SIRK_ARATH3.767e-2838.61Senescence-induced receptor-like serine/threonine-... [more]
ERL2_ARATH4.509e-2835.34LRR receptor-like serine/threonine-protein kinase ... [more]
WAKLE_ARATH5.892e-2834.98Wall-associated receptor kinase-like 5 OS=Arabidop... [more]
WAKLC_ARATH5.893e-2834.12Wall-associated receptor kinase-like 3 OS=Arabidop... [more]
CRK11_ARATH5.901e-2836.23Cysteine-rich receptor-like protein kinase 11 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC06002B05SK RindPdig24 Citrus clementina cDNA clone C06002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297498 ID=CX297498; Name=CX297498; organism=Citrus clementina; type=EST; length=745bp
GAATTCGGCACGAGGAAAAGGAATACGGTAAGTTACCATCAAATCCGGAA
GAAGTAGAGGACCTGCGTCGTGATTCGGCTGCAAATCCATTGATTGCATT
CACGTACGATGAACTGAGAATCATCACTGCAAATTTCAGGCAAGATCGTG
TGTTGGGTGGAGGCGGATTTGGATGTGTTTACAAAGGGTTCATTTCTGAG
GACTTAAGGGAAGGGCTTCAGCCTGTTCCAGTGGCTGTTAAGGTTCATGA
TGGTGATAACAGTTATCAAGGCCACCGGGAATGGCTGGCAGAAGTCATAT
TTTTGGGACACCTTTCTCATCCGAATTTGGTTAAGTTGATCGGTTACTGC
TGTGAAGATGAACACCGGGTACTAATATATGAGTTCATGGCTCGGGGTAG
TGTCGAAAACAATCTTTTCTCAAAAGTACTGCTTCCTCTTCCATGGTCTA
TCAGAATGAAGATTGCATTTGGTGCTGCAAAAGGACTGGCCTTCCTTCAT
GAAGCAGAGAAACCTGTCATCTATCGCGACTTTAAGACATCTAATATTCT
CTTAGATACGGACTACAATGCANAGCTCTCGGACTTTGGCCTTGCCAAAG
ATGGACCAGAGGGGGACAAATCTCACGTTTCAACTCGCATAATGGGAACT
TATGGATATGCAGCCCCTGAGTACATAATGACGGGTCATCTAACTCCCAG
AGTGATGTGTACAGCTTTGGTGTCGTGCTTCTTGAGATCTGACAG
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