CX297498

Overview
NameCX297498
Unique NameCX297498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y2899_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.230e-34
Identity = 86/205 (41.95%), Postives = 118/205 (57.56%), Query Frame = 3
Query:   93 IAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVL-LPLPWSIRMKIAFGAAKGLAFLHEA-EKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            I FTY E++ +T NF  D+ L       VY GF++   +       VAVK+    +S QG++ + AEV  L  + H NLV L+GYC E EH  LIYE+M  G ++ +L  K     L W  R+KI   AA GL +LH     P+++RD KT+NILLD    A L+DFGL++  P G++ +VST + GT GY  PEY  T  LT +
Sbjct:  565 IRFTYSEVQEMTNNF--DKALGEGGFGVVYHGFVNVIEQ-------VAVKLLSQSSS-QGYKHFKAEVELLMRVHHINLVSLVGYCDEGEHLALIYEYMPNGDLKQHLSGKHGGFVLSWESRLKIVLDAALGLEYLHTGCVPPMVHRDIKTTNILLDQHLQAKLADFGLSRSFPIGNEKNVSTVVAGTPGYLDPEYYQTNWLTEK 759          

HSP 2 Score: 28.1054 bits (61), Expect = 2.230e-34
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SD+YSFG+VLLEI
Sbjct:  759 KSDIYSFGIVLLEI 772          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: RKF3_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.918e-34
Identity = 82/215 (38.14%), Postives = 123/215 (57.21%), Query Frame = 3
Query:   75 SAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCC-----EDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            S +  L+ F++DE++  T NF +  ++       V+KG     L +G Q   VA K    + S  G   +  EV  +  + H NL+ L GYC      E   R+++ + ++ GS+ ++LF  +   L W +R +IA G A+GLA+LH   +P +I+RD K SNILLD  + A ++DFGLAK  PEG  +H+STR+ GT GY APEY + G LT +
Sbjct:  263 SESTTLVKFSFDEIKKATNNFSRHNIIGRGGYGNVFKGA----LPDGTQ---VAFKRFK-NCSAGGDANFAHEVEVIASIRHVNLLALRGYCTATTPYEGHQRIIVCDLVSNGSLHDHLFGDLEAQLAWPLRQRIALGMARGLAYLHYGAQPSIIHRDIKASNILLDERFEAKVADFGLAKFNPEG-MTHMSTRVAGTMGYVAPEYALYGQLTEK 468          

HSP 2 Score: 29.6462 bits (65), Expect = 2.918e-34
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G    +SDVYSFGVVLLE+
Sbjct:  463 GQLTEKSDVYSFGVVLLEL 481          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.595e-34
Identity = 80/203 (39.41%), Postives = 121/203 (59.61%), Query Frame = 3
Query:   96 AFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            AFT++EL   T NF     +       VYKG +            +A+K      S QG  E+  E+  L  + H N+VKL+G+C + + ++L+YE++  GS+ + L  K  + L W+ R+KIA G+ KGLA+LHE A+ P+I+RD K++NILLD    A ++DFGL+K   + +K+HV+T++ GT GY  PEY MT  LT +
Sbjct:  621 AFTFEELSKCTNNFSDANDVGGGGYGQVYKGTLPNGQ-------VIAIK-RAQQGSMQGAFEFKTEIELLSRVHHKNVVKLLGFCFDQKEQMLVYEYIPNGSLRDGLSGKNGVKLDWTRRLKIALGSGKGLAYLHELADPPIIHRDVKSNNILLDEHLTAKVADFGLSKLVGDPEKAHVTTQVKGTMGYLDPEYYMTNQLTEK 815          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y1756_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07560 OS=Arabidopsis thaliana GN=At1g07560 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.929e-34
Identity = 80/202 (39.60%), Postives = 116/202 (57.43%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            +TY E+  +T  F  +RVL       VY G+I+     G + V V +      +S QG++E+  EV  L  + H NLV L+GYC E +H  LIY++M  G ++ +     ++   W  R+ IA  AA GL +LH   KP +++RD K+SNILLD    A L+DFGL++  P GD+SHVST + GT+GY   EY  T  L+ +
Sbjct:  560 YTYAEVLAMTKKF--ERVLGKGGFGMVYHGYIN-----GTEEVAVKLL---SPSSAQGYKEFKTEVELLLRVYHTNLVSLVGYCDEKDHLALIYQYMVNGDLKKHFSGSSIIS--WVDRLNIAVDAASGLEYLHIGCKPLIVHRDVKSSNILLDDQLQAKLADFGLSRSFPIGDESHVSTLVAGTFGYLDHEYYQTNRLSEK 749          

HSP 2 Score: 29.261 bits (64), Expect = 4.929e-34
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 2
Query:  692 NSQSDVYSFGVVLLEI 739
            + +SDVYSFGVVLLEI
Sbjct:  747 SEKSDVYSFGVVLLEI 762          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: ANX2_ARATH (Receptor-like protein kinase ANXUR2 OS=Arabidopsis thaliana GN=ANX2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.929e-34
Identity = 80/202 (39.60%), Postives = 115/202 (56.93%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            F+  E++  T NF +  V+       VYKG I    +       VA+K     NS QG  E+  E+  L  L H +LV LIGYC E     LIY++M+ G++  +L++     L W  R++IA GAA+GL +LH   K  +I+RD KT+NILLD ++ A +SDFGL+K GP  +  HV+T + G++GY  PEY     LT +
Sbjct:  509 FSLSEIKHGTHNFDESNVIGVGGFGKVYKGVIDGGTK-------VAIK-KSNPNSEQGLNEFETEIELLSRLRHKHLVSLIGYCDEGGEMCLIYDYMSLGTLREHLYNTKRPQLTWKRRLEIAIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMNGGHVTTVVKGSFGYLDPEYFRRQQLTEK 702          

HSP 2 Score: 26.9498 bits (58), Expect = 4.929e-34
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYSFGVVL E+
Sbjct:  702 KSDVYSFGVVLFEV 715          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.837e-34
Identity = 83/203 (40.89%), Postives = 119/203 (58.62%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFS-KVLLPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            FTY E+  +T NF  +RVL       VY G ++     G QP+ V +      +S QG++E+ AEV  L  + H NLV L+GYC E+ +  L+YE+   G ++ +L   +   PL WS R+KI    A+GL +LH   KP +++RD KT+NILLD  + A L+DFGL++  P G ++HVST + GT GY  PEY  T  L  +
Sbjct:  563 FTYSEVEALTDNF--ERVLGEGGFGVVYHGILN-----GTQPIAVKLL---SQSSVQGYKEFKAEVELLLRVHHVNLVSLVGYCDEESNLALLYEYAPNGDLKQHLSGERGGSPLKWSSRLKIVVETAQGLEYLHTGCKPPMVHRDVKTTNILLDEHFQAKLADFGLSRSFPVGGETHVSTAVAGTPGYLDPEYYRTNRLNEK 755          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: ANX1_ARATH (Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana GN=ANX1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.363e-34
Identity = 80/202 (39.60%), Postives = 114/202 (56.44%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            F+  E++  T NF    V+       VYKG I    +       VAVK     NS QG  E+  E+  L  L H +LV LIGYC E     L+Y++MA G++  +L++     L W  R++IA GAA+GL +LH   K  +I+RD KT+NIL+D ++ A +SDFGL+K GP  +  HV+T + G++GY  PEY     LT +
Sbjct:  505 FSLPEIKHGTQNFDDSNVIGVGGFGKVYKGVIDGTTK-------VAVK-KSNPNSEQGLNEFETEIELLSRLRHKHLVSLIGYCDEGGEMCLVYDYMAFGTLREHLYNTKKPQLTWKRRLEIAIGAARGLHYLHTGAKYTIIHRDVKTTNILVDENWVAKVSDFGLSKTGPNMNGGHVTTVVKGSFGYLDPEYFRRQQLTEK 698          

HSP 2 Score: 27.335 bits (59), Expect = 8.363e-34
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYSFGVVL EI
Sbjct:  698 KSDVYSFGVVLFEI 711          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y1105_ARATH (Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.093e-33
Identity = 82/211 (38.86%), Postives = 117/211 (55.45%), Query Frame = 3
Query:   93 IAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDE----HRVLIYEFMARGSVENNLFSK---VLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIY-RDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            I F  +EL   T NF Q   +       VYKG + +     ++ V         ++ +QG  E+  EV  + +L H NLV L G    D+     R L+Y++M+ G+++++LF +     +PL W  R  I    AKGLA+LH   KP IY RD K +NILLD D  A ++DFGLAK   EG+ SH++TR+ GT+GY APEY + G LT +
Sbjct:  281 IWFKIEELEKATNNFSQKNFIGRGGFGFVYKGVLPDGSVIAVKKVI--------ESEFQGDAEFRNEVEIISNLKHRNLVPLRGCSMVDDDSESQRYLVYDYMSNGNLDDHLFPRGETTKMPLSWPQRKSIILDVAKGLAYLHYGVKPAIYHRDIKGTNILLDVDMRARVADFGLAKQSREGE-SHLTTRVAGTHGYLAPEYALYGQLTEK 482          

HSP 2 Score: 29.6462 bits (65), Expect = 1.093e-33
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G    +SDVYSFGVV+LEI
Sbjct:  477 GQLTEKSDVYSFGVVILEI 495          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: PTI1_SOLLC (Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.435e-33
Identity = 85/229 (37.12%), Postives = 123/229 (53.71%), Query Frame = 3
Query:   39 SNPEEVEDLRRDSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLP-------LPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            S   E + +     A P IA   DEL+ IT NF    ++       VY G +       ++ +         D+S Q  RE+LA+V  +  L   N+V+L+GYC +   RVL YE+   GS+ + L  +  +        L W+ R+KIA GAAKGL +LHE  +P +I+RD K+SNILL  D  A ++DF L+   P+      STR++GT+GY APEY MTG L+ +
Sbjct:   38 SAQRETQTVNIQPIAVPSIAV--DELKDITDNFGSKALIGEGSYGRVYHGVLKSGRAAAIKKL---------DSSKQPDREFLAQVSMVSRLKDENVVELLGYCVDGGFRVLAYEYAPNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKAQPHIIHRDIKSSNILLFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLSSK 255          

HSP 2 Score: 31.5722 bits (70), Expect = 1.435e-33
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G  +S+SDVYSFGVVLLE+
Sbjct:  250 GQLSSKSDVYSFGVVLLEL 268          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.404e-33
Identity = 88/229 (38.43%), Postives = 129/229 (56.33%), Query Frame = 3
Query:   36 PSNPEEVEDLRRDSAANPLIA-----FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLP-LPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            PS+  +V ++R   ++   I      FTY E+  +T NF  +RVL       VY G ++   +       VAVK+    +S QG++E+ AEV  L  + H NLV L+GYC E E+  LIYE+MA G +  ++  K     L W  R+KI   +A+GL +LH   KP +++RD KT+NILL+   +A L+DFGL++  P   ++HVST + GT GY  PEY  T  L  +
Sbjct:  556 PSSYTQVSEVRTIRSSESAIMTKNRRFTYSEVVTMTNNF--ERVLGKGGFGMVYHGTVNNTEQ-------VAVKMLSHSSS-QGYKEFKAEVELLLRVHHKNLVGLVGYCDEGENLALIYEYMANGDLREHMSGKRGGSILNWETRLKIVVESAQGLEYLHNGCKPPMVHRDVKTTNILLNEHLHAKLADFGLSRSFPIEGETHVSTVVAGTPGYLDPEYYRTNWLNEK 774          

HSP 2 Score: 30.8018 bits (68), Expect = 2.404e-33
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 2
Query:  692 NSQSDVYSFGVVLLEI 739
            N +SDVYSFG+VLLEI
Sbjct:  772 NEKSDVYSFGIVLLEI 787          
The following BLAST results are available for this feature:
BLAST of CX297498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
Y2899_ARATH2.230e-3441.95Probable leucine-rich repeat receptor-like protein... [more]
RKF3_ARATH2.918e-3438.14Probable LRR receptor-like serine/threonine-protei... [more]
Y5977_ARATH4.595e-3439.41Probable leucine-rich repeat receptor-like protein... [more]
Y1756_ARATH4.929e-3439.60Probable LRR receptor-like serine/threonine-protei... [more]
ANX2_ARATH4.929e-3439.60Receptor-like protein kinase ANXUR2 OS=Arabidopsis... [more]
Y2289_ARATH7.837e-3440.89Probable LRR receptor-like serine/threonine-protei... [more]
ANX1_ARATH8.363e-3439.60Receptor-like protein kinase ANXUR1 OS=Arabidopsis... [more]
Y1105_ARATH1.093e-3338.86Probable receptor-like protein kinase At1g11050 OS... [more]
PTI1_SOLLC1.435e-3337.12Pto-interacting protein 1 OS=Solanum lycopersicum ... [more]
RLK6_ARATH2.404e-3338.43Receptor-like protein kinase At3g21340 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC06002B05SK RindPdig24 Citrus clementina cDNA clone C06002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297498 ID=CX297498; Name=CX297498; organism=Citrus clementina; type=EST; length=745bp
GAATTCGGCACGAGGAAAAGGAATACGGTAAGTTACCATCAAATCCGGAA
GAAGTAGAGGACCTGCGTCGTGATTCGGCTGCAAATCCATTGATTGCATT
CACGTACGATGAACTGAGAATCATCACTGCAAATTTCAGGCAAGATCGTG
TGTTGGGTGGAGGCGGATTTGGATGTGTTTACAAAGGGTTCATTTCTGAG
GACTTAAGGGAAGGGCTTCAGCCTGTTCCAGTGGCTGTTAAGGTTCATGA
TGGTGATAACAGTTATCAAGGCCACCGGGAATGGCTGGCAGAAGTCATAT
TTTTGGGACACCTTTCTCATCCGAATTTGGTTAAGTTGATCGGTTACTGC
TGTGAAGATGAACACCGGGTACTAATATATGAGTTCATGGCTCGGGGTAG
TGTCGAAAACAATCTTTTCTCAAAAGTACTGCTTCCTCTTCCATGGTCTA
TCAGAATGAAGATTGCATTTGGTGCTGCAAAAGGACTGGCCTTCCTTCAT
GAAGCAGAGAAACCTGTCATCTATCGCGACTTTAAGACATCTAATATTCT
CTTAGATACGGACTACAATGCANAGCTCTCGGACTTTGGCCTTGCCAAAG
ATGGACCAGAGGGGGACAAATCTCACGTTTCAACTCGCATAATGGGAACT
TATGGATATGCAGCCCCTGAGTACATAATGACGGGTCATCTAACTCCCAG
AGTGATGTGTACAGCTTTGGTGTCGTGCTTCTTGAGATCTGACAG
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