CX297498

Overview
NameCX297498
Unique NameCX297498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.426e-11
Identity = 55/196 (28.06%), Postives = 93/196 (47.45%), Query Frame = 3
Query:   15 EKEYGKLPSNPEEVEDLRRDSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHRE--WLAEVIFLGHLSHPNLVKLIGYCCEDEH--RVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLH-EAEKPVIYRDFKTSNILLDTDYNAXLSDF 587
            EKE   +  + E ++D+ R          T  EL +   +F    ++       +YKG     L+ G +   +++ V + D  + G+ E  +  EV  L  L+H N  KL+GYC E     R+L++E+ + G++  +L       + W+ RMKI  G A+GL +LH E + P    +  ++ I L  D+   L DF
Sbjct:  331 EKEKFTVYVDSEMLKDVSR---------LTRQELEVACEDF--SNIIGLSADSQIYKG----TLKGGSEIAVISLCVKEED--WTGYLELYFQREVADLARLNHENTAKLLGYCKEISPFTRMLVFEYASNGTLYEHLHYGEAALVSWARRMKIVIGIARGLKYLHMELDPPFTISELSSNAIYLTEDFTPKLVDF 509          

HSP 2 Score: 21.9422 bits (45), Expect = 3.426e-11
Identity = 7/12 (58.33%), Postives = 12/12 (100.00%), Query Frame = 2
Query:  704 DVYSFGVVLLEI 739
            ++Y+FG++LLEI
Sbjct:  549 NIYAFGILLLEI 560          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: IRAK2_HUMAN (Interleukin-1 receptor-associated kinase-like 2 OS=Homo sapiens GN=IRAK2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.455e-11
Identity = 58/204 (28.43%), Postives = 96/204 (47.06%), Query Frame = 3
Query:  126 TANFRQDRVLXXXXXXCVYKG------FISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK-VLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSH---VSTRIMGTYGYAAPE-YIMTGHLTPRV 704
            T +F Q+R +       VY+G      F+ + LRE     P +++           R + AE+       HPN++ ++G+C   +    IY +MA GS+++ L  +    PLPW  R+ I  G    + +LH  E  +I+ + K+SN+LLD +    L+   +A   P   +S    + T ++ T     PE +I  G LT RV
Sbjct:  207 TDDFNQNRKISQGTFADVYRGHRHGKPFVFKKLRETACSSPGSIE-----------RFFQAELQICLRCCHPNVLPVLGFCAARQFHSFIYPYMANGSLQDRLQGQGGSDPLPWPQRVSICSGLLCAVEYLHGLE--IIHSNVKSSNVLLDQNLTPKLA-HPMAHLCPVNKRSKYTMMKTHLLRTSAAYLPEDFIRVGQLTKRV 396          

HSP 2 Score: 20.4014 bits (41), Expect = 4.455e-11
Identity = 7/19 (36.84%), Postives = 12/19 (63.16%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G    + D++S G+VL E+
Sbjct:  390 GQLTKRVDIFSCGIVLAEV 408          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: LIMK1_CHICK (LIM domain kinase 1 OS=Gallus gallus GN=LIMK1 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 5.772e-11
Identity = 35/108 (32.41%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  276 REWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAK 599
            R +L EV  +  L HPN++K IG   +++    I E++ +G     L   +    PWS R+  A   A G+A+LH     +I+RD  + N L+  + +  ++DFGLA+
Sbjct:  386 RTFLKEVKVMRCLEHPNVLKFIGVLYKEKRLNFITEYI-KGGTLRGLIKSMDSHYPWSQRVSFAKDIAAGMAYLHSMN--IIHRDLNSHNCLVRENKSVVVADFGLAR 490          

HSP 2 Score: 28.1054 bits (61), Expect = 5.772e-11
Identity = 13/32 (40.62%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  644 GNLWICSP*VHNDGSSNSQSDVYSFGVVLLEI 739
            GN +  +P + N  S + + D++SFG+VL EI
Sbjct:  518 GNPYWMAPEMINGRSYDEKVDIFSFGIVLCEI 549          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y5830_ARATH (Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 5.774e-11
Identity = 42/143 (29.37%), Postives = 72/143 (50.35%), Query Frame = 3
Query:  270 GHREWLAEVIFLGHL-SHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK---VLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVI-YRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMT 683
            G RE+  ++  +  + +HP++V L  Y    + ++++ ++   G++ + L         PL W  R+KI   AAKG+A LH A  P   + + K+SN+++  + +A +SDFGL           V    M   GY APE + T
Sbjct:  394 GKREFEQQMEIISRVGNHPSVVPLRAYYYSKDEKLMVCDYYPAGNLSSLLHGNRGSEKTPLDWDSRVKITLSAAKGIAHLHAAGGPKFSHGNIKSSNVIMKQESDACISDFGLT------PLMAVPIAPMRGAGYRAPEVMET 530          

HSP 2 Score: 26.1794 bits (56), Expect = 5.774e-11
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 2
Query:  662 SP*VHNDGSSNSQSDVYSFGVVLLEI 739
            +P V        +SDVYSFGV++LE+
Sbjct:  524 APEVMETRKHTHKSDVYSFGVLILEM 549          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: SAMKA_DICDI (Probable serine/threonine-protein kinase samkA OS=Dictyostelium discoideum GN=samkA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.778e-11
Identity = 33/104 (31.73%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  285 LAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLA 596
            + E+  L  ++HPN++K+IGYC + ++  +  ++  +GS++ N       P       +I+     G+ +LH    P+I+RD K  NILLD + +  L DFGL+
Sbjct:  234 IKEINKLYSINHPNIIKIIGYCKDQKNYYIASKYYPKGSIKKNTKQS---PYSEMNAKRISVKILSGIDYLHSLNPPIIHRDIKCDNILLDENDDPILIDFGLS 334          

HSP 2 Score: 21.1718 bits (43), Expect = 5.778e-11
Identity = 10/28 (35.71%), Postives = 17/28 (60.71%), Query Frame = 2
Query:  662 SP*VHNDGSS--NSQSDVYSFGVVLLEI 739
            SP V+N      + ++D+YSFG  + E+
Sbjct:  355 SPDVNNQEIQIFSEKTDIYSFGCTIFEM 382          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y9956_DICDI (Probable serine/threonine-protein kinase DDB_G0268876 OS=Dictyostelium discoideum GN=DDB_G0268876 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.342e-11
Identity = 43/149 (28.86%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  231 VAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYI 677
            +AVK  + +      RE+ +E   +  L H N+V  +G   +     L+ ++ +RGS+ + + + +  PL  +  + +A   AKG+ +LH     +I+RD K  N+L+D D+N  +SDFGL++        +  T+ +GT  Y A E +
Sbjct:  782 IAVKQFNEEELGFSEREFHSEATIMSVLRHDNIVHCVGGSAQPGKMYLVCDYYSRGSLYSVITANIC-PLSNARIVHLALQVAKGMNYLHSLG--IIHRDLKPGNLLIDQDWNIRISDFGLSR-----VVDNRMTKTVGTPCYMAVEVL 922          

HSP 2 Score: 21.557 bits (44), Expect = 7.342e-11
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 2
Query:  692 NSQSDVYSFGVVLLE 736
            + Q+DVYSF  VL E
Sbjct:  929 SQQADVYSFAFVLWE 943          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: MET_LOXAF (Hepatocyte growth factor receptor OS=Loxodonta africana GN=MET PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 7.342e-11
Identity = 46/156 (29.49%), Postives = 76/156 (48.72%), Query Frame = 3
Query:  144 DRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIY-EFMARGSVENNLFSKVLLPLPWSIRMKIAFG--AAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKD 602
            + V+      CVY G +   L  G + +  AVK  +         ++L E I +   SHPN++ L+G C   E   L+   +M  G + N + ++   P   +++  I FG   AKG+ +L  A K  ++RD    N +LD  +   ++DFGLA+D
Sbjct: 1082 NEVIGRGHFGCVYHGTL---LDNGDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNP---TVKDLIGFGLQVAKGMKYL--ASKKFVHRDLAARNCMLDEKFTVKVADFGLARD 1229          

HSP 2 Score: 23.0978 bits (48), Expect = 7.342e-11
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = 2
Query:  695 SQSDVYSFGVVLLEI 739
            ++SDV+SFGV+L E+
Sbjct: 1263 TKSDVWSFGVLLWEL 1277          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: INSRR_MOUSE (Insulin receptor-related protein OS=Mus musculus GN=Insrr PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 7.354e-11
Identity = 49/181 (27.07%), Postives = 87/181 (48.07%), Query Frame = 3
Query:  177 VYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFS-------KVLLPLP-WSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLT 695
            VY+G ++  L  G +  PVA+K  +   S +   E+L E   +      ++V+L+G   + +  ++I E M RG ++++L S          LP P  S  +++A   A G+A+L  A K  ++RD    N ++  D+   + DFG+ +D  E D      + +    + APE +  G  T
Sbjct:  993 VYEG-LARGLEAGEESTPVALKTVNELASARERVEFLKEASVMKAFKCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSHLRSLRPEAENNPGLPQPALSDMIQMAGEIADGMAYL--AAKKFVHRDLAARNCMVSQDFTVKIGDFGMTRDVYETDYYRKGGKGLLPVRWMAPESLKDGIFT 1170          

HSP 2 Score: 27.7202 bits (60), Expect = 7.354e-11
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 2
Query:  680 DGSSNSQSDVYSFGVVLLEI 739
            DG   + SDV+SFGVVL EI
Sbjct: 1166 DGIFTTHSDVWSFGVVLWEI 1185          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: M3K9_MOUSE (Mitogen-activated protein kinase kinase kinase 9 OS=Mus musculus GN=Map3k9 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 66/200 (33.00%), Postives = 91/200 (45.50%), Query Frame = 3
Query:  114 LRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKV--HDGDNSYQGHREWLA-EVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLH-EAEKPVIYRDFKTSNIL-LDTDYNAXLS-------DFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYI 677
            L I  A    + ++       VY+ F + D         VAVK   HD D       E +  E      L HPN++ L G C ++ +  L+ EF ARG   N + S   +P    I +  A   A+G+ +LH EA  P+I+RD K+SNIL L    N  LS       DFGLA++     K   +    GTY + APE I
Sbjct:  130 LEIDFAELTLEEIIGIGGFGKVYRAFWAGD--------EVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEF-ARGGPLNRVLSGKRIPP--DILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILEITDFGLAREWHRTTKMSAA----GTYAWMAPEVI 314          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: IRAK2_BOVIN (Interleukin-1 receptor-associated kinase-like 2 OS=Bos taurus GN=IRAK2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.740e-11
Identity = 58/204 (28.43%), Postives = 90/204 (44.12%), Query Frame = 3
Query:  126 TANFRQDRVLXXXXXXCVYKG------FISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK-VLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTR----IMGTYGYAAPEYIMTGHLTPRV 704
            T NF     +       VY+G      FI + LRE     P +V+           + + AEV       HPN++ L+G C  ++   LIY +MA GS+++ L  +    PLPW  R+ I  G    +  LH  E  +I+ + K+SN+LLD ++   L+   +A   P    S  +         +  Y   ++I  G LT RV
Sbjct:  203 TDNFNPSHKISEGTFADVYRGHKRGTPFIFKKLREMACSGPGSVE-----------KFFQAEVQICRRCCHPNVLPLLGCCTGEQFYSLIYPYMANGSLQDRLQGQGGSDPLPWPQRISICSGLLHAVEHLHSLE--IIHGNVKSSNVLLDQNFTPKLA-HSMAHPCPVNRTSKYTMMKTHLFQASTAYLPEDFIRVGQLTKRV 392          

HSP 2 Score: 20.4014 bits (41), Expect = 9.740e-11
Identity = 7/19 (36.84%), Postives = 12/19 (63.16%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G    + D++S G+VL E+
Sbjct:  386 GQLTKRVDIFSCGIVLAEV 404          
The following BLAST results are available for this feature:
BLAST of CX297498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
Y1634_ARATH3.426e-1128.06Probable LRR receptor-like serine/threonine-protei... [more]
IRAK2_HUMAN4.455e-1128.43Interleukin-1 receptor-associated kinase-like 2 OS... [more]
LIMK1_CHICK5.772e-1132.41LIM domain kinase 1 OS=Gallus gallus GN=LIMK1 PE=1... [more]
Y5830_ARATH5.774e-1129.37Probable inactive receptor kinase At5g58300 OS=Ara... [more]
SAMKA_DICDI5.778e-1131.73Probable serine/threonine-protein kinase samkA OS=... [more]
Y9956_DICDI7.342e-1128.86Probable serine/threonine-protein kinase DDB_G0268... [more]
MET_LOXAF7.342e-1129.49Hepatocyte growth factor receptor OS=Loxodonta afr... [more]
INSRR_MOUSE7.354e-1127.07Insulin receptor-related protein OS=Mus musculus G... [more]
M3K9_MOUSE9.322e-1133.00Mitogen-activated protein kinase kinase kinase 9 O... [more]
IRAK2_BOVIN9.740e-1128.43Interleukin-1 receptor-associated kinase-like 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionC06002B05SK RindPdig24 Citrus clementina cDNA clone C06002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297498 ID=CX297498; Name=CX297498; organism=Citrus clementina; type=EST; length=745bp
GAATTCGGCACGAGGAAAAGGAATACGGTAAGTTACCATCAAATCCGGAA
GAAGTAGAGGACCTGCGTCGTGATTCGGCTGCAAATCCATTGATTGCATT
CACGTACGATGAACTGAGAATCATCACTGCAAATTTCAGGCAAGATCGTG
TGTTGGGTGGAGGCGGATTTGGATGTGTTTACAAAGGGTTCATTTCTGAG
GACTTAAGGGAAGGGCTTCAGCCTGTTCCAGTGGCTGTTAAGGTTCATGA
TGGTGATAACAGTTATCAAGGCCACCGGGAATGGCTGGCAGAAGTCATAT
TTTTGGGACACCTTTCTCATCCGAATTTGGTTAAGTTGATCGGTTACTGC
TGTGAAGATGAACACCGGGTACTAATATATGAGTTCATGGCTCGGGGTAG
TGTCGAAAACAATCTTTTCTCAAAAGTACTGCTTCCTCTTCCATGGTCTA
TCAGAATGAAGATTGCATTTGGTGCTGCAAAAGGACTGGCCTTCCTTCAT
GAAGCAGAGAAACCTGTCATCTATCGCGACTTTAAGACATCTAATATTCT
CTTAGATACGGACTACAATGCANAGCTCTCGGACTTTGGCCTTGCCAAAG
ATGGACCAGAGGGGGACAAATCTCACGTTTCAACTCGCATAATGGGAACT
TATGGATATGCAGCCCCTGAGTACATAATGACGGGTCATCTAACTCCCAG
AGTGATGTGTACAGCTTTGGTGTCGTGCTTCTTGAGATCTGACAG
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