CX297498

Overview
NameCX297498
Unique NameCX297498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y5188_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.405e-33
Identity = 85/202 (42.08%), Postives = 118/202 (58.42%), Query Frame = 3
Query:  102 TYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVL-LPLPWSIRMKIAFGAAKGLAFLHEA-EKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            TY E+  +T NF  +RVL       VY G         L+   VAVK+    +S QG++E+ AEV  L  + H NLV L+GYC + ++  LIYE+MA G ++ N+  K     L W  RM+IA  AA+GL +LH     P+++RD KT+NILL+  Y A L+DFGL++  P   +SHVST + GT GY  PEY  T  L+ +
Sbjct:  557 TYPEVLKMTNNF--ERVLGKGGFGTVYHG--------NLEDTQVAVKMLS-HSSAQGYKEFKAEVELLLRVHHRNLVGLVGYCDDGDNLALIYEYMANGDLKENMSGKRGGNVLTWENRMQIAVEAAQGLEYLHNGCTPPMVHRDVKTTNILLNERYGAKLADFGLSRSFPVDGESHVSTVVAGTPGYLDPEYYRTNWLSEK 747          

HSP 2 Score: 29.261 bits (64), Expect = 2.405e-33
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 2
Query:  692 NSQSDVYSFGVVLLEI 739
            + +SDVYSFGVVLLEI
Sbjct:  745 SEKSDVYSFGVVLLEI 760          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y2706_ARATH (Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana GN=At2g47060 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.433e-33
Identity = 81/213 (38.03%), Postives = 118/213 (55.40%), Query Frame = 3
Query:   87 PLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLP-------LPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            P+I F+  EL+  T +F  + ++       VY G ++ DL       P A+K  D +   Q   E+LA+V  +  L H N V+L+GYC +   R+L YEF   GS+ + L  +  +        L W  R+KIA GAA+GL +LHE   P +I+RD K+SN+LL  D  A ++DF L+   P+      STR++GT+GY APEY MTG L  +
Sbjct:   59 PIIPFS--ELKEATDDFGSNSLIGEGSYGRVYYGVLNNDL-------PSAIKKLDSNK--QPDNEFLAQVSMVSRLKHDNFVQLLGYCVDGNSRILSYEFANNGSLHDILHGRKGVKGAQPGPVLSWYQRVKIAVGAARGLEYLHEKANPHIIHRDIKSSNVLLFEDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAK 260          

HSP 2 Score: 32.3426 bits (72), Expect = 2.433e-33
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G  N++SDVYSFGVVLLE+
Sbjct:  255 GQLNAKSDVYSFGVVLLEL 273          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.121e-33
Identity = 81/208 (38.94%), Postives = 121/208 (58.17%), Query Frame = 3
Query:   87 PLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK--VLLPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            PL+     ++   T +F +  ++       VYK  +  +    ++ +  A          QG+RE++AE+  LG + HPNLV L+GYC   E ++L+YE+M  GS+++ L ++  +L  L WS R+KIA GAA+GLAFLH    P +I+RD K SNILLD D+   ++DFGLA+      +SHVST I GT+GY  PEY  +   T +
Sbjct:  901 PLLKVRLGDIVEATDHFSKKNIIGDGGFGTVYKACLPGEKTVAVKKLSEA--------KTQGNREFMAEMETLGKVKHPNLVSLLGYCSFSEEKLLVYEYMVNGSLDHWLRNQTGMLEVLDWSKRLKIAVGAARGLAFLHHGFIPHIIHRDIKASNILLDGDFEPKVADFGLAR-LISACESHVSTVIAGTFGYIPPEYGQSARATTK 1099          

HSP 2 Score: 26.9498 bits (58), Expect = 3.121e-33
Identity = 10/17 (58.82%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  689 SNSQSDVYSFGVVLLEI 739
            + ++ DVYSFGV+LLE+
Sbjct: 1096 ATTKGDVYSFGVILLEL 1112          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.078e-33
Identity = 81/204 (39.71%), Postives = 120/204 (58.82%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFS--KVLLPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            F++ E++  T NF++  V+       VY+G     L +G Q   VAVKV   D +  G   ++ EV  L  + H NLV   G+C E + ++L+YE+++ GS+ ++L+        L W  R+K+A  AAKGL +LH   +P +I+RD K+SNILLD D NA +SDFGL+K   + D SH++T + GT GY  PEY  T  LT +
Sbjct:  596 FSHKEIKSATRNFKE--VIGRGSFGAVYRG----KLPDGKQ---VAVKVRF-DRTQLGADSFINEVHLLSQIRHQNLVSFEGFCYEPKRQILVYEYLSGGSLADHLYGPRSKRHSLNWVSRLKVAVDAAKGLDYLHNGSEPRIIHRDVKSSNILLDKDMNAKVSDFGLSKQFTKADASHITTVVKGTAGYLDPEYYSTLQLTEK 789          

HSP 2 Score: 28.1054 bits (61), Expect = 4.078e-33
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYSFGVVLLE+
Sbjct:  789 KSDVYSFGVVLLEL 802          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: ACR4_ARATH (Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.311e-33
Identity = 88/234 (37.61%), Postives = 130/234 (55.56%), Query Frame = 3
Query:   18 KEYGKLPSNPEEVEDLRRDSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVK--VHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK---VLLPLPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            K+ GK+  + +E++  RR         FTY+EL      F+++ ++      CVYKG     LR+G     VAVK  +   D   +   E+  E+  L  L+H +L+ L+GYC E   R+L+YEFMA GS+ N+L  K   +   L W  R+ IA  AA+G+ +LH  A  PVI+RD K+SNIL+D ++NA ++DFGL+  GP    S ++    GT GY  PEY    +LT +
Sbjct:  479 KDNGKIRPDLDELQKRRRARV------FTYEELEKAADGFKEESIVGKGSFSCVYKGV----LRDG---TTVAVKRAIMSSDKQ-KNSNEFRTELDLLSRLNHAHLLSLLGYCEECGERLLVYEFMAHGSLHNHLHGKNKALKEQLDWVKRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPVDSGSPLAELPAGTLGYLDPEYYRLHYLTTK 698          

HSP 2 Score: 28.1054 bits (61), Expect = 5.311e-33
Identity = 12/15 (80.00%), Postives = 15/15 (100.00%), Query Frame = 2
Query:  695 SQSDVYSFGVVLLEI 739
            ++SDVYSFGV+LLEI
Sbjct:  697 TKSDVYSFGVLLLEI 711          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y4391_ARATH (Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.918e-33
Identity = 78/202 (38.61%), Postives = 115/202 (56.93%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            F+  EL+  T NF   +++       VY G + +  +       VAVK      S QG  E+  E+  L  L H +LV LIGYC E+   +L+YEFM+ G   ++L+ K L PL W  R++I  G+A+GL +LH    + +I+RD K++NILLD    A ++DFGL+KD   G ++HVST + G++GY  PEY     LT +
Sbjct:  514 FSLSELQEATKNFEASQIIGVGGFGNVYIGTLDDGTK-------VAVK-RGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENSEMILVYEFMSNGPFRDHLYGKNLAPLTWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGLSKDVAFG-QNHVSTAVKGSFGYLDPEYFRRQQLTDK 706          

HSP 2 Score: 27.335 bits (59), Expect = 6.918e-33
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLE 736
            +SDVYSFGVVLLE
Sbjct:  706 KSDVYSFGVVLLE 718          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.173e-32
Identity = 78/202 (38.61%), Postives = 115/202 (56.93%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            F+  EL+ +T NF    ++       VY G I +  +       VA+K      S QG  E+  E+  L  L H +LV LIGYC E+   +L+YE+M+ G   ++L+ K L PL W  R++I  GAA+GL +LH    + +I+RD K++NILLD    A ++DFGL+KD   G ++HVST + G++GY  PEY     LT +
Sbjct:  513 FSLSELQEVTKNFDASEIIGVGGFGNVYIGTIDDGTQ-------VAIK-RGNPQSEQGITEFHTEIQMLSKLRHRHLVSLIGYCDENAEMILVYEYMSNGPFRDHLYGKNLSPLTWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGLSKDVAFG-QNHVSTAVKGSFGYLDPEYFRRQQLTDK 705          

HSP 2 Score: 27.335 bits (59), Expect = 1.173e-32
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLE 736
            +SDVYSFGVVLLE
Sbjct:  705 KSDVYSFGVVLLE 717          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y5389_ARATH (Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.528e-32
Identity = 81/206 (39.32%), Postives = 119/206 (57.77%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLL---PLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGP-EGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            F+  E++  T +F +  ++       VYKG I            VAVK  +   S QG +E+  E+  L  L H +LV LIGYC +D   VL+YE+M  G+++++LF +      PL W  R++I  GAA+GL +LH   K  +I+RD KT+NILLD ++ A +SDFGL++ GP    ++HVST + GT+GY  PEY     LT +
Sbjct:  513 FSIYEIKSATNDFEEKLIIGVGGFGSVYKGRIDGGA------TLVAVKRLE-ITSNQGAKEFDTELEMLSKLRHVHLVSLIGYCDDDNEMVLVYEYMPHGTLKDHLFRRDKASDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVAKVSDFGLSRVGPTSASQTHVSTVVKGTFGYLDPEYYRRQILTEK 711          

HSP 2 Score: 28.4906 bits (62), Expect = 1.528e-32
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYSFGVVLLE+
Sbjct:  711 KSDVYSFGVVLLEV 724          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.592e-32
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLL---PLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGP-EGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            F+  E++  T +F    ++       VYKG I            VAVK  +   S QG +E+  E+  L  L H +LV LIGYC ED   VL+YE+M  G+++++LF +      PL W  R++I  GAA+GL +LH   K  +I+RD KT+NILLD ++   +SDFGL++ GP    ++HVST + GT+GY  PEY     LT +
Sbjct:  506 FSIFEIKSATNDFEDKLIIGVGGFGSVYKGQIDGGA------TLVAVKRLE-ITSNQGAKEFETELEMLSKLRHVHLVSLIGYCDEDNEMVLVYEYMPHGTLKDHLFRRDKTSDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVTKVSDFGLSRVGPTSASQTHVSTVVKGTFGYLDPEYYRRQVLTEK 704          

HSP 2 Score: 28.4906 bits (62), Expect = 2.592e-32
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVYSFGVVLLE+
Sbjct:  704 KSDVYSFGVVLLEV 717          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: CRI4_MAIZE (Putative receptor protein kinase CRINKLY4 OS=Zea mays GN=CR4 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.374e-32
Identity = 85/222 (38.29%), Postives = 125/222 (56.31%), Query Frame = 3
Query:   51 EVEDLRRDSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREG-LQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK---VLLPLPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            ++EDL+   A      F+Y+EL   T  F +D  +      CV+KG     LR+G +  V  A+K  D   S    +E+  E+  L  L+H +L+ L+GYC +   R+L+YEFMA GS+  +L  K   +   L W+ R+ IA  AA+G+ +LH  A  PVI+RD K+SNIL+D D+NA ++DFGL+  GP    + +S    GT GY  PEY    +LT +
Sbjct:  481 DMEDLKIRRAQE----FSYEELEQATGGFSEDSQVGKGSFSCVFKGI----LRDGTVVAVKRAIKASDVKKS---SKEFHNELDLLSRLNHAHLLNLLGYCEDGSERLLVYEFMAHGSLYQHLHGKDPNLKKRLNWARRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEDHNARVADFGLSILGPADSGTPLSELPAGTLGYLDPEYYRLHYLTTK 691          

HSP 2 Score: 29.261 bits (64), Expect = 3.374e-32
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 2
Query:  695 SQSDVYSFGVVLLEI 739
            ++SDVYSFGVVLLEI
Sbjct:  690 TKSDVYSFGVVLLEI 704          
The following BLAST results are available for this feature:
BLAST of CX297498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
Y5188_ARATH2.405e-3342.08Probable LRR receptor-like serine/threonine-protei... [more]
Y2706_ARATH2.433e-3338.03Probable receptor-like protein kinase At2g47060 OS... [more]
EXS_ARATH3.121e-3338.94Leucine-rich repeat receptor protein kinase EXS OS... [more]
Y5487_ARATH4.078e-3339.71Probable LRR receptor-like serine/threonine-protei... [more]
ACR4_ARATH5.311e-3337.61Serine/threonine-protein kinase-like protein ACR4 ... [more]
Y4391_ARATH6.918e-3338.61Probable receptor-like protein kinase At4g39110 OS... [more]
Y2214_ARATH1.173e-3238.61Probable receptor-like protein kinase At2g21480 OS... [more]
Y5389_ARATH1.528e-3239.32Probable receptor-like protein kinase At5g38990 OS... [more]
Y5900_ARATH2.592e-3239.32Putative receptor-like protein kinase At5g39000 OS... [more]
CRI4_MAIZE3.374e-3238.29Putative receptor protein kinase CRINKLY4 OS=Zea m... [more]

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Properties
Property NameValue
Genbank descriptionC06002B05SK RindPdig24 Citrus clementina cDNA clone C06002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297498 ID=CX297498; Name=CX297498; organism=Citrus clementina; type=EST; length=745bp
GAATTCGGCACGAGGAAAAGGAATACGGTAAGTTACCATCAAATCCGGAA
GAAGTAGAGGACCTGCGTCGTGATTCGGCTGCAAATCCATTGATTGCATT
CACGTACGATGAACTGAGAATCATCACTGCAAATTTCAGGCAAGATCGTG
TGTTGGGTGGAGGCGGATTTGGATGTGTTTACAAAGGGTTCATTTCTGAG
GACTTAAGGGAAGGGCTTCAGCCTGTTCCAGTGGCTGTTAAGGTTCATGA
TGGTGATAACAGTTATCAAGGCCACCGGGAATGGCTGGCAGAAGTCATAT
TTTTGGGACACCTTTCTCATCCGAATTTGGTTAAGTTGATCGGTTACTGC
TGTGAAGATGAACACCGGGTACTAATATATGAGTTCATGGCTCGGGGTAG
TGTCGAAAACAATCTTTTCTCAAAAGTACTGCTTCCTCTTCCATGGTCTA
TCAGAATGAAGATTGCATTTGGTGCTGCAAAAGGACTGGCCTTCCTTCAT
GAAGCAGAGAAACCTGTCATCTATCGCGACTTTAAGACATCTAATATTCT
CTTAGATACGGACTACAATGCANAGCTCTCGGACTTTGGCCTTGCCAAAG
ATGGACCAGAGGGGGACAAATCTCACGTTTCAACTCGCATAATGGGAACT
TATGGATATGCAGCCCCTGAGTACATAATGACGGGTCATCTAACTCCCAG
AGTGATGTGTACAGCTTTGGTGTCGTGCTTCTTGAGATCTGACAG
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