CX297498

Overview
NameCX297498
Unique NameCX297498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: BRL3_ARATH (Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.470e-29
Identity = 79/209 (37.80%), Postives = 115/209 (55.02%), Query Frame = 3
Query:   87 PLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVL---LPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            PL   T+  L   T  F  D ++       VYK  +++     +  +   ++V     + QG RE++AE+  +G + H NLV L+GYC   E R+L+YE+M  GS+E  L  K     + L WS R KIA GAA+GLAFLH +  P +I+RD K+SN+LLD D+ A +SDFG+A+     D     + + GT GY  PEY  +   T +
Sbjct:  842 PLRKLTFAHLLEATNGFSADSMIGSGGFGDVYKAKLADG---SVVAIKKLIQV-----TGQGDREFMAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKYGSLETVLHEKTKKGGIFLDWSARKKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDQDFVARVSDFGMARLVSALDTHLSVSTLAGTPGYVPPEYYQSFRCTAK 1042          

HSP 2 Score: 25.409 bits (54), Expect = 2.470e-29
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = 2
Query:  695 SQSDVYSFGVVLLEI 739
            ++ DVYS+GV+LLE+
Sbjct: 1041 AKGDVYSYGVILLEL 1055          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.478e-29
Identity = 70/160 (43.75%), Postives = 97/160 (60.62%), Query Frame = 3
Query:  231 VAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLP--LPWSIRMKIAFGAAKGLAFLHEAE-KPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            VAVKV     S QG RE+  E+  L  + H NLV L+GYC E + ++L+Y FM+ GS+ + L+ +      L W  R+ IA GAA+GLA+LH    + VI+RD K+SNILLD    A ++DFG +K  P+   S+VS  + GT GY  PEY  T  L+ +
Sbjct:  621 VAVKVRSS-TSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGEASKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEK 779          

HSP 2 Score: 27.7202 bits (60), Expect = 2.478e-29
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = 2
Query:  692 NSQSDVYSFGVVLLEI 739
            + +SDV+SFGVVLLEI
Sbjct:  777 SEKSDVFSFGVVLLEI 792          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: Y2232_ARATH (Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.481e-29
Identity = 69/205 (33.66%), Postives = 113/205 (55.12%), Query Frame = 3
Query:   93 IAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHE--AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            +   + ++   T NF +  ++       VYK  + +  +  ++             S QG  E+  E+  L  + H +LV L GYC E+   +L+YEFM +G+++ +L+   L  L W  R++I  GAA+GL +LH   +E  +I+RD K++NILLD    A ++DFGL+K   + D+S++S  I GT+GY  PEY+ T  LT +
Sbjct:  474 LTIPFTDILSATNNFDEQLLIGKGGFGYVYKAILPDGTKAAIK--------RGKTGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLKEHLYGSNLPSLTWKQRLEICIGAARGLDYLHSSGSEGAIIHRDVKSTNILLDEHNIAKVADFGLSKIHNQ-DESNISINIKGTFGYLDPEYLQTHKLTEK 669          

HSP 2 Score: 27.335 bits (59), Expect = 2.481e-29
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  698 QSDVYSFGVVLLEI 739
            +SDVY+FGVVLLE+
Sbjct:  669 KSDVYAFGVVLLEV 682          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: CRK6_ARATH (Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.488e-29
Identity = 75/210 (35.71%), Postives = 109/210 (51.90%), Query Frame = 3
Query:   72 DSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKV-LLPLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLT 695
            D A    +   Y  ++  T +F +   +       VYKG  S           VAVK     NS QG  E+  EV+ +  L H NLV+L+G+  + E R+L+YE+M   S++  LF     + L W  R  I  G A+G+ +LH+  +  +I+RD K SNILLD D N  ++DFG+A+          ++RI+GTYGY APEY M G  +
Sbjct:  330 DMATADSLQLDYRTIQTATNDFAESNKIGRGGFGEVYKGTFSNGKE-------VAVK-RLSKNSRQGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLLFDPTKQIQLDWMQRYNIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADINPKIADFGMARIFGLDQTQDNTSRIVGTYGYMAPEYAMHGQFS 531          

HSP 2 Score: 28.1054 bits (61), Expect = 2.488e-29
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G  + +SDVYSFGV++LEI
Sbjct:  528 GQFSMKSDVYSFGVLVLEI 546          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: CRK4_ARATH (Cysteine-rich receptor-like protein kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.488e-29
Identity = 74/203 (36.45%), Postives = 107/203 (52.71%), Query Frame = 3
Query:   93 IAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLP-LPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLT 695
            + F +  +   T  F +   L       VYKG            V VAVK      S QG RE+  EVI +  L H NLV+L+G+C E + R+L+YEF+   S++  +F   +   L W+ R KI  G A+G+ +LH+  +  +I+RD K  NILL  D NA ++DFG+A+          + RI+GTYGY +PEY M G  +
Sbjct:  337 LQFDFKAIEAATNKFCETNKLGQGGFGEVYKGIFPSG-------VQVAVK-RLSKTSGQGEREFANEVIVVAKLQHRNLVRLLGFCLERDERILVYEFVPNKSLDYFIFDSTMQSLLDWTRRYKIIGGIARGILYLHQDSRLTIIHRDLKAGNILLGDDMNAKIADFGMARIFGMDQTEANTRRIVGTYGYMSPEYAMYGQFS 531          

HSP 2 Score: 28.1054 bits (61), Expect = 2.488e-29
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G  + +SDVYSFGV++LEI
Sbjct:  528 GQFSMKSDVYSFGVLVLEI 546          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: MEE39_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MEE39 OS=Arabidopsis thaliana GN=MEE39 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.609e-29
Identity = 85/204 (41.67%), Postives = 118/204 (57.84%), Query Frame = 3
Query:   99 FTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSK-VLLPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKD-GPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            FTY E+  +T N +  R L       VY G    DL    Q   VAVK+     S QG++E+ AEV  L  + H NLV L+GYC E +H  LIYE+M+ G +  +L  K     L W  R++IA  AA GL +LH   KP +++RD K++NILLD ++ A ++DFGL++     GD+S VST + GT GY  PEY +T  L+ +
Sbjct:  556 FTYSEVMEMTKNLQ--RPLGEGGFGVVYHG----DLNGSEQ---VAVKLLS-QTSAQGYKEFKAEVELLLRVHHINLVNLVGYCDEQDHFALIYEYMSNGDLHQHLSGKHGGSVLNWGTRLQIAIEAALGLEYLHTGCKPAMVHRDVKSTNILLDEEFKAKIADFGLSRSFQVGGDQSQVSTVVAGTLGYLDPEYYLTSELSEK 749          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: ACCR4_ARATH (Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.609e-29
Identity = 79/218 (36.24%), Postives = 117/218 (53.67%), Query Frame = 3
Query:   75 SAANP--LIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHRE----WLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVLLPLPWSIRMKIAFGAAKGLAFLHE-AEKPVIYRDFKTSNILLDTDYNAXLSDFGLAKDGP--EGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            S  NP  L+ F+ DEL + T  F     L       VY+G +S+     ++   +      G        +    ++ E+  +  L+H NLV+L+G+  + E R+L+YE+M  GS+ ++L +    PL W  R+ IA  AA+G+ +LHE    PVI+RD K+SNILLD  + A +SDFGL++ GP  E D SH+S    GT GY  PEY     LT +
Sbjct:  421 SLGNPGQLMEFSIDELALATDGFSVRFHLGIGSFGSVYQGVLSDGRHVAIKRAELTNPTLSGTTMRHRRADKDSAFVNELESMSRLNHKNLVRLLGFYEDTEERILVYEYMKNGSLADHLHNPQFDPLSWQTRLMIALDAARGIQYLHEFIVPPVIHRDIKSSNILLDATWTAKVSDFGLSQMGPTEEDDVSHLSLHAAGTLGYIDPEYYKFQQLTTK 638          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.224e-29
Identity = 74/203 (36.45%), Postives = 111/203 (54.68%), Query Frame = 3
Query:  102 TYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGH-REWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVL-LPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            T+D++  +T N  +  ++       VYK  +           P+A+K     N Y  + RE+  E+  +G + H N+V L GY       +L Y++M  GS+ + L   +  + L W  R+KIA GAA+GLA+LH    P +I+RD K+SNILLD ++ A LSDFG+AK  P   K+H ST ++GT GY  PEY  T  +  +
Sbjct:  637 TFDDIMRVTENLNEKFIIGYGASSTVYKCALKSSR-------PIAIKRLY--NQYPHNLREFETELETIGSIRHRNIVSLHGYALSPTGNLLFYDYMENGSLWDLLHGSLKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDENFEAHLSDFGIAKSIP-ASKTHASTYVLGTIGYIDPEYARTSRINEK 829          

HSP 2 Score: 29.6462 bits (65), Expect = 3.224e-29
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = 2
Query:  692 NSQSDVYSFGVVLLEI 739
            N +SD+YSFG+VLLE+
Sbjct:  827 NEKSDIYSFGIVLLEL 842          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: CRK23_ARATH (Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.231e-29
Identity = 76/203 (37.44%), Postives = 107/203 (52.71%), Query Frame = 3
Query:   93 IAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREGLQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVL-LPLPWSIRMKIAFGAAKGLAFLHEAEK-PVIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLT 695
            + F +  +   T NF     L       VYKG            V VAVK      S QG RE+  EV+ +  L H NLV+L+GYC E E ++L+YEF+   S++  LF   +   L W+ R KI  G A+G+ +LH+  +  +I+RD K  NILLD D N  ++DFG+A+          + R++GTYGY APEY M G  +
Sbjct:  494 LQFDFKAIVAATNNFLPINKLGQGGFGEVYKGTFPSG-------VQVAVK-RLSKTSGQGEREFENEVVVVAKLQHRNLVRLLGYCLEGEEKILVYEFVHNKSLDYFLFDTTMKRQLDWTRRYKIIGGIARGILYLHQDSRLTIIHRDLKAGNILLDADMNPKVADFGMARIFGMDQTEANTRRVVGTYGYMAPEYAMYGQFS 688          

HSP 2 Score: 26.5646 bits (57), Expect = 3.231e-29
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  683 GSSNSQSDVYSFGVVLLEI 739
            G  + +SDVYSFGV++ EI
Sbjct:  685 GQFSMKSDVYSFGVLVFEI 703          
BLAST of CX297498 vs. ExPASy Swiss-Prot
Match: BRL1_ARATH (Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.187e-29
Identity = 84/230 (36.52%), Postives = 124/230 (53.91%), Query Frame = 3
Query:   30 KLPSNPEEVEDLRRDSAANPLIAFTYDELRIITANFRQDRVLXXXXXXCVYKGFISEDLREG-LQPVPVAVKVHDGDNSYQGHREWLAEVIFLGHLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVENNLFSKVL----LPLPWSIRMKIAFGAAKGLAFLHEAEKP-VIYRDFKTSNILLDTDYNAXLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLTPR 701
            KL S PE +  +   +   PL   T+  L   T  F  + ++       VYK      LR+G +  +   +++     + QG RE++AE+  +G + H NLV L+GYC   E R+L+YE+M  GS+E  L  K      + L W+ R KIA GAA+GLAFLH +  P +I+RD K+SN+LLD D+ A +SDFG+A+     D     + + GT GY  PEY  +   T +
Sbjct:  825 KLSSVPEPLS-INVATFEKPLRKLTFAHLLEATNGFSAETMVGSGGFGEVYKA----QLRDGSVVAIKKLIRI-----TGQGDREFMAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKWGSLETVLHEKSSKKGGIYLNWAARKKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDEDFEARVSDFGMARLVSALDTHLSVSTLAGTPGYVPPEYYQSFRCTAK 1044          

HSP 2 Score: 25.409 bits (54), Expect = 4.187e-29
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = 2
Query:  695 SQSDVYSFGVVLLEI 739
            ++ DVYS+GV+LLE+
Sbjct: 1043 AKGDVYSYGVILLEL 1057          
The following BLAST results are available for this feature:
BLAST of CX297498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
BRL3_ARATH2.470e-2937.80Receptor-like protein kinase BRI1-like 3 OS=Arabid... [more]
NORK_MEDTR2.478e-2943.75Nodulation receptor kinase OS=Medicago truncatula ... [more]
Y2232_ARATH2.481e-2933.66Probable receptor-like protein kinase At2g23200 OS... [more]
CRK6_ARATH2.488e-2935.71Cysteine-rich receptor-like protein kinase 6 OS=Ar... [more]
CRK4_ARATH2.488e-2936.45Cysteine-rich receptor-like protein kinase 4 OS=Ar... [more]
MEE39_ARATH2.609e-2941.67Probable LRR receptor-like serine/threonine-protei... [more]
ACCR4_ARATH2.609e-2936.24Serine/threonine-protein kinase-like protein CCR4 ... [more]
ERL1_ARATH3.224e-2936.45LRR receptor-like serine/threonine-protein kinase ... [more]
CRK23_ARATH3.231e-2937.44Putative cysteine-rich receptor-like protein kinas... [more]
BRL1_ARATH4.187e-2936.52Serine/threonine-protein kinase BRI1-like 1 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC06002B05SK RindPdig24 Citrus clementina cDNA clone C06002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297498 ID=CX297498; Name=CX297498; organism=Citrus clementina; type=EST; length=745bp
GAATTCGGCACGAGGAAAAGGAATACGGTAAGTTACCATCAAATCCGGAA
GAAGTAGAGGACCTGCGTCGTGATTCGGCTGCAAATCCATTGATTGCATT
CACGTACGATGAACTGAGAATCATCACTGCAAATTTCAGGCAAGATCGTG
TGTTGGGTGGAGGCGGATTTGGATGTGTTTACAAAGGGTTCATTTCTGAG
GACTTAAGGGAAGGGCTTCAGCCTGTTCCAGTGGCTGTTAAGGTTCATGA
TGGTGATAACAGTTATCAAGGCCACCGGGAATGGCTGGCAGAAGTCATAT
TTTTGGGACACCTTTCTCATCCGAATTTGGTTAAGTTGATCGGTTACTGC
TGTGAAGATGAACACCGGGTACTAATATATGAGTTCATGGCTCGGGGTAG
TGTCGAAAACAATCTTTTCTCAAAAGTACTGCTTCCTCTTCCATGGTCTA
TCAGAATGAAGATTGCATTTGGTGCTGCAAAAGGACTGGCCTTCCTTCAT
GAAGCAGAGAAACCTGTCATCTATCGCGACTTTAAGACATCTAATATTCT
CTTAGATACGGACTACAATGCANAGCTCTCGGACTTTGGCCTTGCCAAAG
ATGGACCAGAGGGGGACAAATCTCACGTTTCAACTCGCATAATGGGAACT
TATGGATATGCAGCCCCTGAGTACATAATGACGGGTCATCTAACTCCCAG
AGTGATGTGTACAGCTTTGGTGTCGTGCTTCTTGAGATCTGACAG
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