CX297499

Overview
NameCX297499
Unique NameCX297499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: ODP2_RHIME (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rhizobium meliloti GN=pdhC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 3
Query:   15 VGIKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            +G+K F A++NPP + ILAVG+ E RV+  +   +   ++ M+VTLS DHR +DGA+GAE L AFK YIENP  ML+
Sbjct:  373 MGVKDFAAVVNPPHATILAVGAGEDRVV--VRNKEMVIANVMTVTLSTDHRCVDGALGAELLAAFKRYIENPMGMLV 447          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: ODP2_RICPR (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia prowazekii GN=pdhC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 3
Query:   18 GIKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            GIK F AIIN PQS I+ VG++ KR I  +  DQ   ++ M VTLS DHRVIDGA+ AE+L +FK +IENP  ML+
Sbjct:  335 GIKNFNAIINTPQSCIMGVGASTKRAI--VKNDQIIIATIMDVTLSADHRVIDGAVSAEFLASFKRFIENPVLMLI 408          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: ODP2_RICTY (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia typhi GN=pdhC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 3
Query:   18 GIKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            GIK F AIIN PQS I+ VG++ KR I  +  DQ   ++ M VTLS DHRVIDGA+ AE+L +FK +IE+P  ML+
Sbjct:  331 GIKNFNAIINTPQSCIMGVGASTKRAI--VKNDQIIIATIMDVTLSADHRVIDGAVSAEFLASFKRFIEHPVLMLI 404          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: ODP2_NEUCR (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Neurospora crassa GN=mrp-3 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 3
Query:   21 IKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSF---MSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            ++ F AIINPPQ+ ILAVG+ +K  +P    D     S+   + VT S DH+V+DGA+GAEW++  K  IENP  +LL
Sbjct:  381 VQSFTAIINPPQAAILAVGAPQKVAVPVENEDGTTGVSWDEQIIVTASFDHKVVDGAVGAEWIRELKKVIENPLELLL 458          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: ODP2_ZYMMO (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Zymomonas mobilis GN=pdhC PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:   18 GIKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESML 242
            GIKQF A+INPPQ+ ILA+GS E+R  P +  D    ++  ++T S DHRVIDGA  A ++ AFK  +E P  +L
Sbjct:  366 GIKQFNAVINPPQASILAIGSGERR--PWVIDDAITIATVATITGSFDHRVIDGADAAAFMSAFKHLVEKPLGIL 438          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: OPD21_ARATH (Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=LTA3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 3
Query:   21 IKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQYKFSSF---MSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            +  FCAIINPPQ+GILAVG   K V P +G D  +  S    M+VTLS DHR+ DG +GA ++   +   E+   +LL
Sbjct:  560 VDNFCAIINPPQAGILAVGRGNKVVEPVIGLDGIEKPSVVTKMNVTLSADHRIFDGQVGASFMSELRSNFEDVRRLLL 637          
BLAST of CX297499 vs. ExPASy Swiss-Prot
Match: ODP2_SCHPO (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Schizosaccharomyces pombe GN=SPCC794.07 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 3
Query:   21 IKQFCAIINPPQSGILAVGSAEKRVIPGLGPDQ-YKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 245
            + QF AIINPPQ+ ILAVG+    V+P    ++ +K +  M  TLS DHRV+DGA+ A +  A K  +ENP  ++L
Sbjct:  408 VDQFTAIINPPQACILAVGTTVDTVVPDSTSEKGFKVAPIMKCTLSSDHRVVDGAMAARFTTALKKILENPLEIML 483          
The following BLAST results are available for this feature:
BLAST of CX297499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ODP2_RHIME5.816e-1551.95Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICPR1.692e-1456.58Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICTY6.431e-1455.26Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_NEUCR4.609e-1247.44Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_ZYMMO1.341e-1149.33Dihydrolipoyllysine-residue acetyltransferase comp... [more]
OPD21_ARATH2.987e-1146.15Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_SCHPO6.655e-1146.05Dihydrolipoyllysine-residue acetyltransferase comp... [more]

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Properties
Property NameValue
Genbank descriptionC06002B06SK RindPdig24 Citrus clementina cDNA clone C06002B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297499 ID=CX297499; Name=CX297499; organism=Citrus clementina; type=EST; length=718bp
GAATTCGGCACGAGGTCGGCATCAAGCAATTCTGTGCCATTATCAATCCT
CCTCAATCTGGCATTCTTGCAGTTGGATCTGCTGAGAAAAGGGTTATCCC
TGGCTTGGGTCCAGATCAGTATAAATTTTCTTCCTTCATGTCAGTAACAT
TAAGTTGTGATCATCGCGTAATAGATGGTGCGATTGGTGCTGAATGGTTG
AAAGCATTCAAAGGATACATTGAGAATCCGGAGTCCATGTTGCTATAAGC
CAAACTTGTCTTTTTCTAAGTTGAGAAGCTCTTTCCTAGCTGTATCAGTT
TAGATGGGGGCTTCAGTTCAACCCCTTCCACCTGGGATCAGATTGGCATG
GTTGTGTCACTGAGCACATCTTGATTTTGTTTTTCAATTGGTAAACACTT
TTAAGCAAAAATTTTGGAATAAAAGCAGGGGATCGAGGCACGAAACCAAT
CCTTAAACTCATACTCATCCTTGATAGGGTGTTCAACAAGGTGTTCTGCT
ATCGCCGTTTCCTTAATGGATTTTTGGGTTACATACGTGATGAACATGAT
TTTAGTAGAGTGTAATCGCCTCTTTCATGCGGGTAATAATTTGATTTATA
TATAATTTTTGGATTTTCCAATTACCAGTGTTGTGTGAAACAACACTTAT
ATTAATTTGATAAACCTGTATTCTTGTTTTGGGGTATCCAATTGCCGTTG
TGTTACCATTTGGACATA
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