CX297506

Overview
NameCX297506
Unique NameCX297506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig426 contig Ccv1_Contig426:282..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 153
            VF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_DROME (60S ribosomal protein L23 OS=Drosophila melanogaster GN=RpL23 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 153
            VF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A++I
Sbjct:   94 VFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSI 139          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 153
            VF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 153
            VF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_AEDAE (60S ribosomal protein L23 OS=Aedes aegypti GN=RpL23-A PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 153
            VF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   94 VFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_CANFA (60S ribosomal protein L23 OS=Canis familiaris GN=RPL23 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.011e-15
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 153
            VF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWP IAS A +I
Sbjct:   94 VFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWPXIASNAGSI 139          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_CAEEL (60S ribosomal protein L23 OS=Caenorhabditis elegans GN=rpl-23 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1
Query:   19 FMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 153
            F+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIA+ A +I
Sbjct:   95 FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIAANAGSI 139          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_BRUMA (60S ribosomal protein L23 OS=Brugia malayi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.018e-15
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1
Query:   22 MYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 153
            +YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:   96 IYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPRIASNAGSI 139          
BLAST of CX297506 vs. ExPASy Swiss-Prot
Match: RL23_DICDI (60S ribosomal protein L23 OS=Dictyostelium discoideum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   16 VFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 156
            V++YFEDNAGV+ NPKGE+KG+ I GP+ KEC+DLWP++A+ A  IV
Sbjct:   91 VYIYFEDNAGVMCNPKGEVKGN-ILGPVAKECSDLWPKVATNAGTIV 136          
The following BLAST results are available for this feature:
BLAST of CX297506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RL23_HUMAN1.560e-1684.7860S ribosomal protein L23 OS=Homo sapiens GN=RPL23... [more]
RL23_DROME1.560e-1684.7860S ribosomal protein L23 OS=Drosophila melanogast... [more]
RL23_DANRE1.560e-1684.7860S ribosomal protein L23 OS=Danio rerio GN=rpl23 ... [more]
RL23_BOVIN1.560e-1684.7860S ribosomal protein L23 OS=Bos taurus GN=RPL23 P... [more]
RL23_AEDAE1.560e-1684.7860S ribosomal protein L23 OS=Aedes aegypti GN=RpL2... [more]
RL23_CANFA1.011e-1582.6160S ribosomal protein L23 OS=Canis familiaris GN=R... [more]
RL23_CAEEL1.320e-1582.2260S ribosomal protein L23 OS=Caenorhabditis elegan... [more]
RL23_BRUMA5.018e-1584.0960S ribosomal protein L23 OS=Brugia malayi GN=RPL2... [more]
RL23_DICDI5.192e-1263.8360S ribosomal protein L23 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC06002C01SK RindPdig24 Citrus clementina cDNA clone C06002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297506 ID=CX297506; Name=CX297506; organism=Citrus clementina; type=EST; length=411bp
GAATTCGGCACGAGGGTCTTCATGTACTTTGAAGATAATGCAGGTGTTAT
TGTGAATCCAAAGGGAGAAATGAAGGGTTCTGCCATCACCGGTCCAATTG
GTAAAGAGTGTGCTGATTTGTGGCCGAGGATTGCAAGTGCAGCCAATGCT
ATCGTTTAAGACATTCAAGACCGATAACCTATATCATCCTTTTTGTTGCA
CTAAAAAGAATTCTGGTGAAGTTTCATAGTAGGAAGGAGTAAAGCTTTTC
TGTGAACTTTCTGTATGATTTTGTTGTTCTAGTTTTGGAAGTGGTATGAA
AGTTTGGAGTTTTGTTGATCTTGATATCATTTTCATGCTGATTGTGTTTT
TGAATTCAACTTCCGATGCAATACGGTTGCAATTTTATCAAAAAAAAAAA
AAAAAAAAAAA
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