CX297566

Overview
NameCX297566
Unique NameCX297566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.129e-53
Identity = 76/126 (60.32%), Postives = 89/126 (70.63%), Query Frame = 2
Query:  185 EVHRISDFFTNCGKIRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRVCENIPIVLCGNKVYVNNMSVICLRVTFHRKKNLQYYEIVARAITTLRSLFFTLPENLLG 562
            EVH ++ F+TN G+I+F  WDT GQ+KFGGL DGYYI  QC I MFDVT+R+TY +VP WHRDL RVCENIPIVLCGNKV V    V    +TFHRKKNLQYY+I A++       F  L   L G
Sbjct:   43 EVHPLA-FYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAG 167          

HSP 2 Score: 68.9366 bits (167), Expect = 3.129e-53
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   67 DYPSFKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            + P+FKLV+VGDGG+GKTTFVKRHLTGEF+KKY  TIGV
Sbjct:    4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGV 42          
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 4.078e-53
Identity = 77/126 (61.11%), Postives = 89/126 (70.63%), Query Frame = 2
Query:  185 EVHRISDFFTNCGKIRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRVCENIPIVLCGNKVYVNNMSVICLRVTFHRKKNLQYYEIVARAITTLRSLFFTLPENLLG 562
            EVH +  F TN G+I+F  WDT GQ+KFGGL DGYYI GQC I MFDVT+R+TY +VP WHRDL RVCENIPIVLCGNKV V    V    +TFHRKKNLQYY+I A++       F  L   L+G
Sbjct:   43 EVHPLG-FSTNFGQIQFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVG 167          

HSP 2 Score: 68.1662 bits (165), Expect = 4.078e-53
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1
Query:   73 PSFKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            P+FKLV+VGDGG+GKTTFVKRHLTGEF+KKY  T+GV
Sbjct:    6 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYMATLGV 42          
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: GSP1_CANGA (GTP-binding nuclear protein GSP1/Ran OS=Candida glabrata GN=GSP1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.931e-53
Identity = 76/126 (60.32%), Postives = 88/126 (69.84%), Query Frame = 2
Query:  185 EVHRISDFFTNCGKIRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRVCENIPIVLCGNKVYVNNMSVICLRVTFHRKKNLQYYEIVARAITTLRSLFFTLPENLLG 562
            EVH ++ F TN G+I+F  WDT GQ+KFGGL DGYYI  QC I MFDVT+R+TY +VP WHRDL RVCENIPIVLCGNKV V    V    +TFHRKKNLQYY+I A++       F  L   L G
Sbjct:   43 EVHPLA-FHTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAG 167          

HSP 2 Score: 69.3218 bits (168), Expect = 6.931e-53
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1
Query:   61 TVDYPSFKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            + + P+FKLV+VGDGG+GKTTFVKRHLTGEF+KKY  TIGV
Sbjct:    2 SAEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGV 42          
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 9.034e-53
Identity = 76/126 (60.32%), Postives = 90/126 (71.43%), Query Frame = 2
Query:  185 EVHRISDFFTNCGKIRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRVCENIPIVLCGNKVYVNNMSVICLRVTFHRKKNLQYYEIVARAITTLRSLFFTLPENLLG 562
            EVH +  F TN G IRF  WDT GQ+KFGGL DGYYI+GQCA+ MFDVT+R+TY +VP WHRDL RVCENIPIVLCGNKV + +  V    + FHRKKNLQYY+I A++       F  L   L+G
Sbjct:   46 EVHPLI-FHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVG 170          

HSP 2 Score: 67.3958 bits (163), Expect = 9.034e-53
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 1
Query:   67 DYPSFKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            D P+FK V+VGDGG+GKTTFVKRH+TGEF+KKY  T+GV
Sbjct:    7 DIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGV 45          
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.535e-52
Identity = 73/119 (61.34%), Postives = 85/119 (71.43%), Query Frame = 2
Query:  206 FFTNCGKIRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRVCENIPIVLCGNKVYVNNMSVICLRVTFHRKKNLQYYEIVARAITTLRSLFFTLPENLLG 562
            F TN G+++F  WDT GQ+KFGGL DGYYI GQC I MFDVT+R+TY +VP WHRDL RVCENIPIVLCGNKV V    V    +TFHRKKNLQYY+I A++       F  L   L+G
Sbjct:   49 FHTNFGELKFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVG 167          

HSP 2 Score: 68.1662 bits (165), Expect = 1.535e-52
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   67 DYPSFKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            + P+FKLV+VGDGG+GKTTFVKRHLTGEF+KKY  T+GV
Sbjct:    4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGV 42          
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RAN_ONCVO (GTP-binding nuclear protein Ran OS=Onchocerca volvulus GN=ran-1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.778e-52
Identity = 79/126 (62.70%), Postives = 90/126 (71.43%), Query Frame = 2
Query:  185 EVHRISDFFTNCGKIRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRVCENIPIVLCGNKVYVNNMSVICLRVTFHRKKNLQYYEIVARAITTLRSLFFTLPENLLG 562
            EVH +  F TN G+IRF  WDT GQ+KFGGL DGYYI+GQCAI MFDVTAR+TY +VP WHRDL RVCENIPIVLCGN V V +  V    +TFHRKKNLQYY+I A++          L   LLG
Sbjct:   45 EVHPLI-FHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNFVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLVRKLLG 169          

HSP 2 Score: 65.0846 bits (157), Expect = 5.778e-52
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 1
Query:   67 DYPSFKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            D P+FKLV+VGDGG+GKTTFVKRHLTG+ +KKY  T+GV
Sbjct:    6 DIPTFKLVLVGDGGTGKTTFVKRHLTGDPEKKYVATLGV 44          
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.279e-51
Identity = 70/120 (58.33%), Postives = 83/120 (69.17%), Query Frame = 2
Query:  203 DFFTNCGKIRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRVCENIPIVLCGNKVYVNNMSVICLRVTFHRKKNLQYYEIVARAITTLRSLFFTLPENLLG 562
            DFFTN GKIRF CWDT GQ+K+ GL D YYI GQCAI MFDVTAR TY ++  W+RDL RVC+NIPIVLCGNKV V +  +    V++HRKK LQYYE+ A+        F  L   + G
Sbjct:   54 DFFTNRGKIRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLRRVCKNIPIVLCGNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAG 173          

HSP 2 Score: 76.6406 bits (187), Expect = 1.279e-51
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1
Query:   46 LPNHQTVDYPSFKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            LPN Q VD P+FKL+IVGDGG+GKTTF+KRHLTGEF+   EPT+GV
Sbjct:    3 LPNQQNVDLPTFKLLIVGDGGTGKTTFLKRHLTGEFEHNTEPTLGV 48          
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.280e-51
Identity = 78/126 (61.90%), Postives = 92/126 (73.02%), Query Frame = 2
Query:  185 EVHRISDFFTNCGKIRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRVCENIPIVLCGNKVYVNNMSVICLRVTFHRKKNLQYYEIVARAITTLRSLFFTLPENLLG 562
            EVH +  F TN G I+F  WDT GQ+KFGGL DGYYI+ QCAI MFDVT+R+TY +VP+WH+DL RVCENIPIVLCGNKV V +M V    + FHRKKNLQYY+I AR+       FF L   L+G
Sbjct:   46 EVHTLV-FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDLVRVCENIPIVLCGNKVDVKDMKVKAKPILFHRKKNLQYYDISARSNYNFEKPFFWLARKLIG 170          

HSP 2 Score: 61.2326 bits (147), Expect = 1.280e-51
Identity = 26/35 (74.29%), Postives = 33/35 (94.29%), Query Frame = 1
Query:   79 FKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            FK+V+VGDGG+GKTTF+KRHLTGEF+K+Y  T+GV
Sbjct:   11 FKVVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGV 45          
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.668e-51
Identity = 76/126 (60.32%), Postives = 92/126 (73.02%), Query Frame = 2
Query:  185 EVHRISDFFTNCGKIRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRVCENIPIVLCGNKVYVNNMSVICLRVTFHRKKNLQYYEIVARAITTLRSLFFTLPENLLG 562
            EVH +  F TN G I+F  WDT GQ+KFGGL DGYYI+ QCAI MFDVT+R+TY +VP+WH+DL RVCENIPIVLCGNKV + +M V    + FHRKKNLQYY+I A++       FF L   L+G
Sbjct:   46 EVHTLV-FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDLVRVCENIPIVLCGNKVDIKDMKVKAKPILFHRKKNLQYYDISAKSNYNFEKPFFWLARKLIG 170          

HSP 2 Score: 62.3882 bits (150), Expect = 1.668e-51
Identity = 27/35 (77.14%), Postives = 33/35 (94.29%), Query Frame = 1
Query:   79 FKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            FKLV+VGDGG+GKTTF+KRHLTGEF+K+Y  T+GV
Sbjct:   11 FKLVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGV 45          
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.669e-51
Identity = 80/132 (60.61%), Postives = 91/132 (68.94%), Query Frame = 2
Query:  167 NRPLV*EVHRISDFFTNCGKIRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRVCENIPIVLCGNKVYVNNMSVICLRVTFHRKKNLQYYEIVARAITTLRSLFFTLPENLLG 562
            N  L  EVH ++ F T+CG IRF  WDT GQ+KFGGL DGYYI GQC I MFDVT+R+TY +VP WHRDL RVCENIPIVLCGNKV V    V    +TFHRKKNLQYY+I A++       F  L   L G
Sbjct:   37 NATLGVEVHPLN-FATDCGNIRFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAG 167          

HSP 2 Score: 59.3066 bits (142), Expect = 1.669e-51
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   76 SFKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            +FKLV+VGDGG+GKTTFVKRH TGEF  +Y  T+GV
Sbjct:    7 AFKLVLVGDGGTGKTTFVKRHETGEFVNRYNATLGV 42          
The following BLAST results are available for this feature:
BLAST of CX297566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
GSP1_ASHGO3.129e-5360.32GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]
GSP1_NEUCR4.078e-5361.11GTP-binding nuclear protein GSP1/Ran OS=Neurospora... [more]
GSP1_CANGA6.931e-5360.32GTP-binding nuclear protein GSP1/Ran OS=Candida gl... [more]
RAN_DROME9.034e-5360.32GTP-binding nuclear protein Ran OS=Drosophila mela... [more]
GSP1_CANAL1.535e-5261.34GTP-binding nuclear protein GSP1/Ran OS=Candida al... [more]
RAN_ONCVO5.778e-5262.70GTP-binding nuclear protein Ran OS=Onchocerca volv... [more]
RAN4_ARATH1.279e-5158.33GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RANT_MOUSE1.280e-5161.90GTP-binding nuclear protein Ran, testis-specific i... [more]
RANT_RAT1.668e-5160.32GTP-binding nuclear protein Ran, testis-specific i... [more]
GSP1_YARLI1.669e-5160.61GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]

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Properties
Property NameValue
Genbank descriptionC06002H05SK RindPdig24 Citrus clementina cDNA clone C06002H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297566 ID=CX297566; Name=CX297566; organism=Citrus clementina; type=EST; length=631bp
TCGCTTAAATTCAAAATCCAAACGCAGCATATCAACTCATGGCTACTGCC
GAATCATCAAACTGTTGATTATCCAAGCTTCAAACTTGTAATTGTCGGCG
ATGGTGGCTCTGGGAAGACTACCTTTGTGAAGAGGCATCTTACTGGTGAA
TTCAAGAAGAAATATGAACCGACCATTGGTGTAGGAAGTTCATCGCATTA
GTGACTTCTTTACCAACTGTGGAAAAATACGATTCTATTGCTGGGACACT
GTCGGACAAGATAAGTTTGGTGGTCTTATAGATGGATACTACATCCGTGG
GCAATGTGCTATCTTCATGTTTGATGTTACTGCCCGCTTGACGTATAATA
GTGTTCCCACGTGGCACCGTGATCTCTGCAGGGTGTGTGAAAACATCCCA
ATTGTTCTTTGCGGGAACAAGGTCTATGTGAATAACATGTCGGTGATATG
CTTGCGGGTTACTTTCCACAGGAAGAAGAATTTGCAGTACTATGAGATCG
TGGCCAGAGCAATTACAACTTTGAGAAGCCTTTTCTTTACCTTGCCAGAG
AACTTGCTGGGGATCCTAACTTGCATTTTGACCAGTCTCCTGCCCTTGCT
CCCCCAGAGGTGCAAATCGATTTGTCTGCTC
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