CX297566

Overview
NameCX297566
Unique NameCX297566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.752e-12
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 2 
Query:  224 KIRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRV-CENIPIVLCGNK 421
            K++   WDT GQ++F  +   YY     AI  +D+T R T+ SVP W  ++ +    N+ I+L GNK
Sbjct:   65 KVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 131

HSP 2 Score: 34.6538 bits (78), Expect = 1.752e-12
Identity = 16/42 (38.10%), Postives = 26/42 (61.90%), Query Frame = 1 
Query:   58 QTVDYPSFKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            + VDY  FK++++GD   GKT  V+   +G + +  + TIGV
Sbjct:   12 ENVDY-LFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGV 52

HSP 3 Score: 21.557 bits (44), Expect = 1.752e-12
Identity = 10/31 (32.26%), Postives = 18/31 (58.06%), Query Frame = 1 
Query:  484 AVL*DRGQSNYNFEKPFLYLARELAGDPNLH 576
            AVL    + + N ++ F+ +A+EL    +LH
Sbjct:  156 AVLETSAKESRNIDEVFVLMAKELIARNSLH 186
[Close]
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 54.6842 bits (130), Expect = 1.752e-12
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 2 
Query:  224 KIRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRV-CENIPIVLCGNK 421
            K++   WDT GQ++F  +   YY     AI  +D+T R T+ SVP W  ++ +    N+ I+L GNK
Sbjct:   65 KVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 131

HSP 2 Score: 34.6538 bits (78), Expect = 1.752e-12
Identity = 16/42 (38.10%), Postives = 26/42 (61.90%), Query Frame = 1 
Query:   58 QTVDYPSFKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            + VDY  FK++++GD   GKT  V+   +G + +  + TIGV
Sbjct:   12 ENVDY-LFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGV 52

HSP 3 Score: 21.557 bits (44), Expect = 1.752e-12
Identity = 10/31 (32.26%), Postives = 18/31 (58.06%), Query Frame = 1 
Query:  484 AVL*DRGQSNYNFEKPFLYLARELAGDPNLH 576
            AVL    + + N ++ F+ +A+EL    +LH
Sbjct:  156 AVLETSAKESRNIDEVFVLMAKELIARNSLH 186
[Close]
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.985e-12
Identity = 31/109 (28.44%), Postives = 53/109 (48.62%), Query Frame = 2 
Query:  227 IRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDL-CRVCENIPIVLCGNKVYVNNMSVICLR--VTFHRKKNLQYYEIVARAITTLRSLFFTL 544
            ++   WDT GQ+++  +   YY     A+ ++D+T R T++ +P W  +L      NI I+L GNK  + +   +       F +K+ L + E  A   T L   F T+
Sbjct:   64 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTV 172

HSP 2 Score: 35.039 bits (79), Expect = 1.985e-12
Identity = 18/42 (42.86%), Postives = 24/42 (57.14%), Query Frame = 1 
Query:   58 QTVDYPSFKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            Q +DY  FK+V++GD   GKT  + R    EF    + TIGV
Sbjct:   10 QKIDYV-FKVVLIGDSAVGKTQILARFARNEFSLDSKATIGV 50
[Close]
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RAB23_HUMAN (Ras-related protein Rab-23 OS=Homo sapiens GN=RAB23 PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 2.573e-12
Identity = 29/115 (25.22%), Postives = 53/115 (46.09%), Query Frame = 2 
Query:  227 IRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRVCENIPIVLCGNKVYVNNMSVICLR----VTFHRKKNLQYYEIVARAITTLRSLFFTLPENLL 559
            +R   WDT GQ++F  +   YY   Q  + +F  T R ++ +V +W   +     +IP VL  NK+ + + S  C++        ++  L++Y    +    +  +F  L E  L
Sbjct:   58 VRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQNKIDLLDDS--CIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYL 170

HSP 2 Score: 39.2762 bits (90), Expect = 2.573e-12
Identity = 16/36 (44.44%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:   76 SFKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV
Sbjct:    9 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV 44
[Close]
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 2.577e-12
Identity = 22/62 (35.48%), Postives = 40/62 (64.52%), Query Frame = 2 
Query:  239 CWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRVCE-NIPIVLCGNK 421
            CWDT GQ++F  +  GYY     A+ ++D+T+++++ +V  W  +L  + E +I I++ GNK
Sbjct:   63 CWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNK 124

HSP 2 Score: 38.1206 bits (87), Expect = 2.577e-12
Identity = 18/46 (39.13%), Postives = 27/46 (58.70%), Query Frame = 1 
Query:   46 LPNHQTVDYPSFKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            +P  +  +Y  FK+VI+GD   GK+  + R    EF +K + TIGV
Sbjct:    1 MPQEEEAEY-LFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGV 45
[Close]
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 2.582e-12
Identity = 28/102 (27.45%), Postives = 52/102 (50.98%), Query Frame = 2 
Query:  224 KIRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCRVC-ENIPIVLCGNKVYVNNMSVICLRVTFHRKKNLQYYEIVARAITTLR 526
            +++   WDT GQ++F  +   YY     AI  +D+T R ++ SVP W  D+ +    NI  +L GNK  ++ +  + L      +   ++Y+I+    T+ +
Sbjct:   66 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLA---EAQSLAEHYDILCAIETSAK 164

HSP 2 Score: 39.2762 bits (90), Expect = 2.582e-12
Identity = 19/35 (54.29%), Postives = 23/35 (65.71%), Query Frame = 1 
Query:   79 FKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            FKLV+VGD   GKT  V+R  TG F ++   TIGV
Sbjct:   19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGV 53
[Close]
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 4.348e-12
Identity = 31/109 (28.44%), Postives = 53/109 (48.62%), Query Frame = 2 
Query:  227 IRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDL-CRVCENIPIVLCGNKVYVNNMSVICLR--VTFHRKKNLQYYEIVARAITTLRSLFFTL 544
            ++   WDT GQ+++  +   YY     A+ ++D+T R T++ +P W  +L      NI I+L GNK  + +   +       F +K+ L + E  A   T L   F T+
Sbjct:   64 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTV 172

HSP 2 Score: 33.4982 bits (75), Expect = 4.348e-12
Identity = 17/42 (40.48%), Postives = 24/42 (57.14%), Query Frame = 1 
Query:   58 QTVDYPSFKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIGV 183
            Q +DY  FK+V++GD   GK+  + R    EF    + TIGV
Sbjct:   10 QKIDYV-FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGV 50
[Close]
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 4.352e-12
Identity = 39/144 (27.08%), Postives = 63/144 (43.75%), Query Frame = 2 
Query:  227 IRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCR-VCENIPIVLCGNKVYVNNMSVICLR--VTFHRKKNLQYYEIVARAITTLRSLFFTL--------PENLLGXXXXXXXXXXXXXXQRCKSIC 625
            ++F  WDT GQ+++  L   YY   Q AI ++D+T + T+    TW ++L R    +I I L GNK  + N  ++       +    +L + E  A+    +  LF  +        P+NL G              Q+ KS C
Sbjct:   69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQC 212

HSP 2 Score: 34.2686 bits (77), Expect = 4.352e-12
Identity = 15/34 (44.12%), Postives = 23/34 (67.65%), Query Frame = 1 
Query:   79 FKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIG 180
            FKLV++G+   GK++ V R + G+F +  E TIG
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIG 54
[Close]
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 4.352e-12
Identity = 39/144 (27.08%), Postives = 63/144 (43.75%), Query Frame = 2 
Query:  227 IRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCR-VCENIPIVLCGNKVYVNNMSVICLR--VTFHRKKNLQYYEIVARAITTLRSLFFTL--------PENLLGXXXXXXXXXXXXXXQRCKSIC 625
            ++F  WDT GQ+++  L   YY   Q AI ++D+T + T+    TW ++L R    +I I L GNK  + N  ++       +    +L + E  A+    +  LF  +        P+NL G              Q+ KS C
Sbjct:   69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQC 212

HSP 2 Score: 34.2686 bits (77), Expect = 4.352e-12
Identity = 15/34 (44.12%), Postives = 23/34 (67.65%), Query Frame = 1 
Query:   79 FKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIG 180
            FKLV++G+   GK++ V R + G+F +  E TIG
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIG 54
[Close]
BLAST of CX297566 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 4.352e-12
Identity = 39/144 (27.08%), Postives = 63/144 (43.75%), Query Frame = 2 
Query:  227 IRFYCWDTVGQDKFGGLIDGYYIRGQCAIFMFDVTARLTYNSVPTWHRDLCR-VCENIPIVLCGNKVYVNNMSVICLR--VTFHRKKNLQYYEIVARAITTLRSLFFTL--------PENLLGXXXXXXXXXXXXXXQRCKSIC 625
            ++F  WDT GQ+++  L   YY   Q AI ++D+T + T+    TW ++L R    +I I L GNK  + N  ++       +    +L + E  A+    +  LF  +        P+NL G              Q+ KS C
Sbjct:   69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQC 212

HSP 2 Score: 34.2686 bits (77), Expect = 4.352e-12
Identity = 15/34 (44.12%), Postives = 23/34 (67.65%), Query Frame = 1 
Query:   79 FKLVIVGDGGSGKTTFVKRHLTGEFKKKYEPTIG 180
            FKLV++G+   GK++ V R + G+F +  E TIG
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIG 54
The following BLAST results are available for this feature:
BLAST of CX297566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
RAB19_RAT1.752e-1237.31Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]
RAB19_MOUSE1.752e-1237.31Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
RB11C_TOBAC1.985e-1228.44Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RAB23_HUMAN2.573e-1225.22Ras-related protein Rab-23 OS=Homo sapiens GN=RAB2... [more]
RB11C_DICDI2.577e-1235.48Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB43_HUMAN2.582e-1227.45Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RB11D_TOBAC4.348e-1228.44Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RAB5B_PONAB4.352e-1227.08Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE4.352e-1227.08Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN4.352e-1227.08Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]

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Properties
Property NameValue
Genbank descriptionC06002H05SK RindPdig24 Citrus clementina cDNA clone C06002H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297566 ID=CX297566; Name=CX297566; organism=Citrus clementina; type=EST; length=631bp
TCGCTTAAATTCAAAATCCAAACGCAGCATATCAACTCATGGCTACTGCC
GAATCATCAAACTGTTGATTATCCAAGCTTCAAACTTGTAATTGTCGGCG
ATGGTGGCTCTGGGAAGACTACCTTTGTGAAGAGGCATCTTACTGGTGAA
TTCAAGAAGAAATATGAACCGACCATTGGTGTAGGAAGTTCATCGCATTA
GTGACTTCTTTACCAACTGTGGAAAAATACGATTCTATTGCTGGGACACT
GTCGGACAAGATAAGTTTGGTGGTCTTATAGATGGATACTACATCCGTGG
GCAATGTGCTATCTTCATGTTTGATGTTACTGCCCGCTTGACGTATAATA
GTGTTCCCACGTGGCACCGTGATCTCTGCAGGGTGTGTGAAAACATCCCA
ATTGTTCTTTGCGGGAACAAGGTCTATGTGAATAACATGTCGGTGATATG
CTTGCGGGTTACTTTCCACAGGAAGAAGAATTTGCAGTACTATGAGATCG
TGGCCAGAGCAATTACAACTTTGAGAAGCCTTTTCTTTACCTTGCCAGAG
AACTTGCTGGGGATCCTAACTTGCATTTTGACCAGTCTCCTGCCCTTGCT
CCCCCAGAGGTGCAAATCGATTTGTCTGCTC
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