CX297674

Overview
NameCX297674
Unique NameCX297674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length486
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297674 vs. ExPASy Swiss-Prot
Match: RL38_ARGMO (60S ribosomal protein L38 OS=Argas monolakensis GN=RpL38 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.811e-22
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 3
Query:   45 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 251
            MPKQ+ EIKDFLLTARRKDA+SV+IK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSLPPGL V++L
Sbjct:    1 MPKQLKEIKDFLLTARRKDAKSVRIKKNPDNVTKFKVRCSKYLYTIVVKEKEKAEKLKQSLPPGLQVKEL 70          
BLAST of CX297674 vs. ExPASy Swiss-Prot
Match: RL38_LYSTE (60S ribosomal protein L38 OS=Lysiphlebus testaceipes GN=RpL38 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22
Identity = 48/69 (69.57%), Postives = 62/69 (89.86%), Query Frame = 3
Query:   45 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 251
            MP++I EIKDFL+TARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKEIKDFLVTARRKDAKSVKIKKNAENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of CX297674 vs. ExPASy Swiss-Prot
Match: RL38_JULON (60S ribosomal protein L38 OS=Julodis onopordi GN=RpL38 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.263e-22
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   45 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 251
            MP++I EIKDFLL ARRKDA+SVKIK++ D VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPREITEIKDFLLKARRKDAKSVKIKKNPDNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of CX297674 vs. ExPASy Swiss-Prot
Match: RL38_SPOFR (60S ribosomal protein L38 OS=Spodoptera frugiperda GN=RpL38 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.380e-21
Identity = 47/69 (68.12%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   45 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 251
            MP++I +IKDFLL ARRKDA+SVKIK+++  VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKDIKDFLLKARRKDAKSVKIKKNQQNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of CX297674 vs. ExPASy Swiss-Prot
Match: RL38_PLUXY (60S ribosomal protein L38 OS=Plutella xylostella GN=RpL38 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.108e-21
Identity = 47/69 (68.12%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   45 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 251
            MP++I +IKDFLL ARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of CX297674 vs. ExPASy Swiss-Prot
Match: RL38_ARTSF (60S ribosomal protein L38 OS=Artemia sanfranciscana GN=RPL38 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.060e-21
Identity = 47/69 (68.12%), Postives = 60/69 (86.96%), Query Frame = 3
Query:   45 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 251
            MPKQ+ EIKDFL+ ARRKDA+S KIK++ D  KFK+RCS++LYTL + DSEKA+KLK+SLPPGL V++L
Sbjct:    1 MPKQLMEIKDFLIKARRKDAKSCKIKKNPDNTKFKLRCSRFLYTLVITDSEKAEKLKKSLPPGLQVKEL 69          
BLAST of CX297674 vs. ExPASy Swiss-Prot
Match: RL38_AEDAE (60S ribosomal protein L38 OS=Aedes aegypti GN=RpL38 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.060e-21
Identity = 46/69 (66.67%), Postives = 60/69 (86.96%), Query Frame = 3
Query:   45 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 251
            MP++I E+KDFL+ ARRKDAR+VKIK++ +  KFK+RCS+YLYTL V D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPQEIKEVKDFLIKARRKDARAVKIKKNENNTKFKIRCSRYLYTLVVQDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of CX297674 vs. ExPASy Swiss-Prot
Match: RL38_BOMMO (60S ribosomal protein L38 OS=Bombyx mori GN=RpL38 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.302e-21
Identity = 46/69 (66.67%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   45 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 251
            MP++I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of CX297674 vs. ExPASy Swiss-Prot
Match: RL38_TIMBA (60S ribosomal protein L38 OS=Timarcha balearica GN=RpL38 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.925e-21
Identity = 46/69 (66.67%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   45 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 251
            MP+++ EIK+FLLTARRKDA+SVKIK++ +  KFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPRELTEIKEFLLTARRKDAKSVKIKKNPENTKFKVRCSRFLYTLVITDREKAEKLKQSLPPGLQVKEV 69          
BLAST of CX297674 vs. ExPASy Swiss-Prot
Match: RL38_CAEEL (60S ribosomal protein L38 OS=Caenorhabditis elegans GN=rpl-38 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 6.925e-21
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 3
Query:   45 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 251
            MPK+I EIKDFL+ ARRKDA+SVKIK++ +  KFKVRC+ YLYTL V D +KA+KLKQSLPPG+ V++L
Sbjct:    1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKEL 69          
The following BLAST results are available for this feature:
BLAST of CX297674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL38_ARGMO2.811e-2274.2960S ribosomal protein L38 OS=Argas monolakensis GN... [more]
RL38_LYSTE4.796e-2269.5760S ribosomal protein L38 OS=Lysiphlebus testaceip... [more]
RL38_JULON6.263e-2271.0160S ribosomal protein L38 OS=Julodis onopordi GN=R... [more]
RL38_SPOFR2.380e-2168.1260S ribosomal protein L38 OS=Spodoptera frugiperda... [more]
RL38_PLUXY3.108e-2168.1260S ribosomal protein L38 OS=Plutella xylostella G... [more]
RL38_ARTSF4.060e-2168.1260S ribosomal protein L38 OS=Artemia sanfranciscan... [more]
RL38_AEDAE4.060e-2166.6760S ribosomal protein L38 OS=Aedes aegypti GN=RpL3... [more]
RL38_BOMMO5.302e-2166.6760S ribosomal protein L38 OS=Bombyx mori GN=RpL38 ... [more]
RL38_TIMBA6.925e-2166.6760S ribosomal protein L38 OS=Timarcha balearica GN... [more]
RL38_CAEEL6.925e-2168.1260S ribosomal protein L38 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionC06004A08SK RindPdig24 Citrus clementina cDNA clone C06004A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297674 ID=CX297674; Name=CX297674; organism=Citrus clementina; type=EST; length=486bp
GAGGTTAATTCGAAACTCGAGTGGAACAAAAACCTCGACCGAGAATGCCT
AAGCAGATACACGAGATCAAGGATTTCCTTCTCACCGCCAGAAGGAAGGA
TGCACGCTCTGTGAAAATCAAGAGAAGCAGAGATGTTGTCAAGTTCAAGG
TTCGCTGCTCTAAGTACCTTTACACCCTTTGTGTGTTCGACTCAGAGAAG
GCTGACAAGTTGAAGCAGTCTCTTCCTCCAGGTTTGAGCGTCCAAGACCT
GTGAGTGTATGCGAGCTTGTCTTAATTTACTAGGCGATGAGAGCTGCTTT
TTTACATTTCATGCTGTTTTCTCATAGTAGAAATATTGTGTGGATTTGAG
CGTATTTGATAATTGTTATTGTTAGAGGATGCGGATCTTTTTGCCAGTTG
ATTTATGGACGTTGAAACTTGGTTTGCACAANANAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAACCTCGGGGGGGGGCCCGGT
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