CX297678

Overview
NameCX297678
Unique NameCX297678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_HUMAN (E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 77/251 (30.68%), Postives = 120/251 (47.81%), Query Frame = 3
Query:    6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA-------------CLTEALRYNSEDRHLAVNL-ETTKWELADAEKELKWLKSAVTSS----DKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704
            L+  + +  +E EA ++EM+  GQAFEDMQ QN  LLQQ+ E+DD N KL+SE +K  Q+   L  EK  L  Q+  + + V++  L +   EE+ +A               ++AL  N      A  L E  K +L   +  L+ ++  +  S    +KE   ++R  ED                        +  E+ ++  E     LQ+EIK+ KA L C  C  R ++ V+TKCFH+FC  C++
Sbjct:  740 LQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLE-------------KQRKVEVYADADEI----LQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVR 973          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1A_CHICK (E3 ubiquitin-protein ligase BRE1A OS=Gallus gallus GN=RNF20 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 73/236 (30.93%), Postives = 120/236 (50.85%), Query Frame = 3
Query:    6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVN-LETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEA--AIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704
            L++ +    +E EA ++EM+  GQAFEDMQ QN  L+QQ+ E+DD N KL+SE +K+ Q+   L  EK+ LA Q+  +   V+ A+L+++   E+ +  L  ++    ++  L    LE  K +  DA +    LK+ +  + K+    Q +  +                     +  K+ E T +        + L +EIKD KA L C  C  R ++ V+TKCFH+FC  C++
Sbjct:  723 LQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLREKDDANFKLMSERIKSNQIHKLLKEEKEELADQVLTLKTQVD-AQLQVVRKLEEKEHLLQSSIGTGEKELGLRTQALEMNKRKAMDAAQLADDLKTQLELAQKKLHDFQDEIVESRVTREKEMFNFKRAEEDISRLRRKL-ETTKKPDMVPNCDEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVK 956          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1A_BOVIN (E3 ubiquitin-protein ligase BRE1A OS=Bos taurus GN=RNF20 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 72/236 (30.51%), Postives = 119/236 (50.42%), Query Frame = 3
Query:    6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVN-LETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEA--AIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704
            L++ +    +E EA ++EM+  GQAFEDMQ QN  L+QQ+ E+DD N KL+SE +K+ Q+   L  EK+ LA Q+  +   V+ A+L+++   E+ +  L   +    ++  L    LE  K +  +A +    LK+ +  + K+    Q +  +                     +  K+ E T +        + L +EIKD KA L C  C  R ++ V+TKCFH+FC  C++
Sbjct:  714 LQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLREKDDANFKLMSERIKSNQIHKLLKEEKEELADQVLTLKTQVD-AQLQVVRKLEEKEHLLQSNIGTGEKELGLRTQALEMNKRKAMEAAQLADDLKAQLEMAQKKLHDFQDEIVENSVTKEKDMFNFKRAQEDISRLRRKL-ETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVK 947          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1A_MOUSE (E3 ubiquitin-protein ligase BRE1A OS=Mus musculus GN=Rnf20 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 72/236 (30.51%), Postives = 119/236 (50.42%), Query Frame = 3
Query:    6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVN-LETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEA--AIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704
            L++ +    +E EA ++EM+  GQAFEDMQ QN  L+QQ+ E+DD N KL+SE +K+ Q+   L  EK+ LA Q+  +   V+ A+L+++   E+ +  L   +    ++  L    LE  K +  +A +    LK+ +  + K+    Q +  +                     +  K+ E T +        + L +EIKD KA L C  C  R ++ V+TKCFH+FC  C++
Sbjct:  712 LQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLREKDDANFKLMSERIKSNQIHKLLKEEKEELADQVLTLKTQVD-AQLQVVRKLEEKEHLLQSNIGTGEKELGLRTQALEMNKRKAMEAAQLADDLKAQLELAQKKLHDFQDEIVENSVTKEKDLFNFKRAQEDISRLRRKL-ETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVK 945          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1A_HUMAN (E3 ubiquitin-protein ligase BRE1A OS=Homo sapiens GN=RNF20 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 72/236 (30.51%), Postives = 119/236 (50.42%), Query Frame = 3
Query:    6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVN-LETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEA--AIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704
            L++ +    +E EA ++EM+  GQAFEDMQ QN  L+QQ+ E+DD N KL+SE +K+ Q+   L  EK+ LA Q+  +   V+ A+L+++   E+ +  L   +    ++  L    LE  K +  +A +    LK+ +  + K+    Q +  +                     +  K+ E T +        + L +EIKD KA L C  C  R ++ V+TKCFH+FC  C++
Sbjct:  714 LQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLREKDDANFKLMSERIKSNQIHKLLKEEKEELADQVLTLKTQVD-AQLQVVRKLEEKEHLLQSNIGTGEKELGLRTQALEMNKRKAMEAAQLADDLKAQLELAQKKLHDFQDEIVENSVTKEKDMFNFKRAQEDISRLRRKL-ETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVK 947          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1_DROME (E3 ubiquitin-protein ligase Bre1 OS=Drosophila melanogaster GN=Bre1 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 64/226 (28.32%), Postives = 104/226 (46.02%), Query Frame = 3
Query:   36 EAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAK--LRILHAEEQMKACLTEALRYNSEDRHLAVNLETTK-WELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704
            E EA + EME  GQAFEDMQ QN  L+QQ+ E+DD N KL+SE +K  Q+   L  EK  L  Q+      +E+    LR L  +E+       ++      R  A+ +   K  E A +  +LK       +  KE +Q+  +                           ++ ++   +G    + + +EI++ K  L C  C  + ++ V++KCFH+FC  C++
Sbjct:  792 EEEALLNEMEVTGQAFEDMQEQNSRLIQQLREKDDANFKLMSERIKANQLHKLLREEKTVLEDQMATATTQIEAMHIVLRKLEEKERSLQATVASIEKELMLRQQAMEMHKRKAIESAQSAADLKLHLEKYHAQMKEAQQVVAEKTSSLEAEAYKTKRLQEELAQFKRKAERMKKM-EMSGTTIDEVMIEEIREYKETLTCPSCKVKRKDAVLSKCFHVFCYDCLR 1016          
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1_DICDI (Probable E3 ubiquitin-protein ligase bre1 OS=Dictyostelium discoideum GN=bre1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 56/249 (22.49%), Postives = 120/249 (48.19%), Query Frame = 3
Query:   21 KSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQ-----------VQSFLLSEKQALARQLQQINALVESAKL---RILHAEEQMKAC---LTEALRYNSEDRHLAVNLETTKWELADAEKELKW-LKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQRNL 713
            +S+ +E EA + E++++G+A+E M  QN  L +Q+++++D +  L++E++K++Q           ++  L   ++ L  Q + +  + E + +   ++    E + +C   L +  R+  E+   ++ L+T    L++   ELK     ++ + ++E ++ +R  E+                      NN      + +  +     ++E+K     L+C +C DR +  VI KCFH+FC  CI  N+
Sbjct:  813 ESQKQELEALVMEIDSMGKAYEQMLEQNTRLTKQLSDKEDTHAHLMAENIKSQQTIRNSKEIQLAIEEKLNRNEEKLKSQGELMQKIEEKSNILQKQLSKVTEDLHSCSFDLEKHKRFVRENNAHSLELKTQLDHLSNLNAELKKKADDSIFALEREIDKAKRLDEEKQLLKKKLEKATSANNNNNNNNNNNNNNNNNNSSSS-----EEELKLINQRLRCTICNDRQKNYVIAKCFHVFCKECIYSNI 1056          
The following BLAST results are available for this feature:
BLAST of CX297678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
BRE1B_HUMAN2.337e-2430.68E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens ... [more]
BRE1A_CHICK3.052e-2430.93E3 ubiquitin-protein ligase BRE1A OS=Gallus gallus... [more]
BRE1A_BOVIN8.880e-2430.51E3 ubiquitin-protein ligase BRE1A OS=Bos taurus GN... [more]
BRE1A_MOUSE1.160e-2330.51E3 ubiquitin-protein ligase BRE1A OS=Mus musculus ... [more]
BRE1A_HUMAN1.160e-2330.51E3 ubiquitin-protein ligase BRE1A OS=Homo sapiens ... [more]
BRE1_DROME5.043e-1928.32E3 ubiquitin-protein ligase Bre1 OS=Drosophila mel... [more]
BRE1_DICDI9.841e-1522.49Probable E3 ubiquitin-protein ligase bre1 OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionC06004A12SK RindPdig24 Citrus clementina cDNA clone C06004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297678 ID=CX297678; Name=CX297678; organism=Citrus clementina; type=EST; length=713bp
GAGGGCTCGAAGAGGCTATGAAAAGCAAAGATCGAGAAGCGGAAGCATAC
ATTGCTGAAATGGAGACCATTGGTCAAGCATTCGAAGATATGCAGACACA
GAACCAGCATTTGCTCCAGCAAGTGGCTGAGAGGGATGACCTAAATATTA
AGCTTGTCTCTGAGAGTGTGAAGACTAAGCAAGTGCAAAGCTTTCTACTC
TCTGAGAAGCAGGCACTGGCAAGGCAACTTCAACAAATCAATGCATTGGT
GGAATCTGCAAAATTGAGAATTCTCCATGCTGAAGAACAGATGAAAGCCT
GTCTGACAGAGGCTCTTAGATATAACTCTGAAGACAGACATCTTGCAGTC
AACCTTGAAACTACAAAGTGGGAATTAGCAGATGCAGAGAAAGAGTTGAA
GTGGCTGAAGTCTGCCGTTACTTCTTCTGATAAGGAATATGAGCAGATCC
AGCGGAAGACGGAAGACATGCGAAAAGAATTGGAAAATGAAAGAAATGAA
AGAAAGAAGCTAGAGGAAGAGCTCATGGAAGTAAATAATAAGGTTGCCGA
ATTGACTTCTGAAACTGGTGAGGCTGCAATACAGAAACTTCAGGACGAGA
TAAAAGATTGCAAAGCAATTCTCAAGTGTGGCGTGTGTTTTGACCGCCCC
CAAGAGGTTGTTATAACAAAATGCTTTCATCTGTTCTGCAATCCGTGTAT
CCAAAGAAATCTT
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