CX297678
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1B_HUMAN (E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=3) HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24 Identity = 77/251 (30.68%), Postives = 120/251 (47.81%), Query Frame = 3 Query: 6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKA-------------CLTEALRYNSEDRHLAVNL-ETTKWELADAEKELKWLKSAVTSS----DKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704 L+ + + +E EA ++EM+ GQAFEDMQ QN LLQQ+ E+DD N KL+SE +K Q+ L EK L Q+ + + V++ L + EE+ +A ++AL N A L E K +L + L+ ++ + S +KE ++R ED + E+ ++ E LQ+EIK+ KA L C C R ++ V+TKCFH+FC C++ Sbjct: 740 LQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLE-------------KQRKVEVYADADEI----LQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVR 973
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1A_CHICK (E3 ubiquitin-protein ligase BRE1A OS=Gallus gallus GN=RNF20 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 73/236 (30.93%), Postives = 120/236 (50.85%), Query Frame = 3 Query: 6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVN-LETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEA--AIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704 L++ + +E EA ++EM+ GQAFEDMQ QN L+QQ+ E+DD N KL+SE +K+ Q+ L EK+ LA Q+ + V+ A+L+++ E+ + L ++ ++ L LE K + DA + LK+ + + K+ Q + + + K+ E T + + L +EIKD KA L C C R ++ V+TKCFH+FC C++ Sbjct: 723 LQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLREKDDANFKLMSERIKSNQIHKLLKEEKEELADQVLTLKTQVD-AQLQVVRKLEEKEHLLQSSIGTGEKELGLRTQALEMNKRKAMDAAQLADDLKTQLELAQKKLHDFQDEIVESRVTREKEMFNFKRAEEDISRLRRKL-ETTKKPDMVPNCDEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVK 956
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1A_BOVIN (E3 ubiquitin-protein ligase BRE1A OS=Bos taurus GN=RNF20 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24 Identity = 72/236 (30.51%), Postives = 119/236 (50.42%), Query Frame = 3 Query: 6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVN-LETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEA--AIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704 L++ + +E EA ++EM+ GQAFEDMQ QN L+QQ+ E+DD N KL+SE +K+ Q+ L EK+ LA Q+ + V+ A+L+++ E+ + L + ++ L LE K + +A + LK+ + + K+ Q + + + K+ E T + + L +EIKD KA L C C R ++ V+TKCFH+FC C++ Sbjct: 714 LQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLREKDDANFKLMSERIKSNQIHKLLKEEKEELADQVLTLKTQVD-AQLQVVRKLEEKEHLLQSNIGTGEKELGLRTQALEMNKRKAMEAAQLADDLKAQLEMAQKKLHDFQDEIVENSVTKEKDMFNFKRAQEDISRLRRKL-ETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVK 947
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1A_MOUSE (E3 ubiquitin-protein ligase BRE1A OS=Mus musculus GN=Rnf20 PE=1 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23 Identity = 72/236 (30.51%), Postives = 119/236 (50.42%), Query Frame = 3 Query: 6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVN-LETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEA--AIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704 L++ + +E EA ++EM+ GQAFEDMQ QN L+QQ+ E+DD N KL+SE +K+ Q+ L EK+ LA Q+ + V+ A+L+++ E+ + L + ++ L LE K + +A + LK+ + + K+ Q + + + K+ E T + + L +EIKD KA L C C R ++ V+TKCFH+FC C++ Sbjct: 712 LQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLREKDDANFKLMSERIKSNQIHKLLKEEKEELADQVLTLKTQVD-AQLQVVRKLEEKEHLLQSNIGTGEKELGLRTQALEMNKRKAMEAAQLADDLKAQLELAQKKLHDFQDEIVENSVTKEKDLFNFKRAQEDISRLRRKL-ETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVK 945
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1A_HUMAN (E3 ubiquitin-protein ligase BRE1A OS=Homo sapiens GN=RNF20 PE=1 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23 Identity = 72/236 (30.51%), Postives = 119/236 (50.42%), Query Frame = 3 Query: 6 LEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVN-LETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEA--AIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704 L++ + +E EA ++EM+ GQAFEDMQ QN L+QQ+ E+DD N KL+SE +K+ Q+ L EK+ LA Q+ + V+ A+L+++ E+ + L + ++ L LE K + +A + LK+ + + K+ Q + + + K+ E T + + L +EIKD KA L C C R ++ V+TKCFH+FC C++ Sbjct: 714 LQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLREKDDANFKLMSERIKSNQIHKLLKEEKEELADQVLTLKTQVD-AQLQVVRKLEEKEHLLQSNIGTGEKELGLRTQALEMNKRKAMEAAQLADDLKAQLELAQKKLHDFQDEIVENSVTKEKDMFNFKRAQEDISRLRRKL-ETTKKPDNVPKCDEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVK 947
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1_DROME (E3 ubiquitin-protein ligase Bre1 OS=Drosophila melanogaster GN=Bre1 PE=1 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19 Identity = 64/226 (28.32%), Postives = 104/226 (46.02%), Query Frame = 3 Query: 36 EAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAK--LRILHAEEQMKACLTEALRYNSEDRHLAVNLETTK-WELADAEKELKWLKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQ 704 E EA + EME GQAFEDMQ QN L+QQ+ E+DD N KL+SE +K Q+ L EK L Q+ +E+ LR L +E+ ++ R A+ + K E A + +LK + KE +Q+ + ++ ++ +G + + +EI++ K L C C + ++ V++KCFH+FC C++ Sbjct: 792 EEEALLNEMEVTGQAFEDMQEQNSRLIQQLREKDDANFKLMSERIKANQLHKLLREEKTVLEDQMATATTQIEAMHIVLRKLEEKERSLQATVASIEKELMLRQQAMEMHKRKAIESAQSAADLKLHLEKYHAQMKEAQQVVAEKTSSLEAEAYKTKRLQEELAQFKRKAERMKKM-EMSGTTIDEVMIEEIREYKETLTCPSCKVKRKDAVLSKCFHVFCYDCLR 1016
BLAST of CX297678 vs. ExPASy Swiss-Prot
Match: BRE1_DICDI (Probable E3 ubiquitin-protein ligase bre1 OS=Dictyostelium discoideum GN=bre1 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15 Identity = 56/249 (22.49%), Postives = 120/249 (48.19%), Query Frame = 3 Query: 21 KSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQ-----------VQSFLLSEKQALARQLQQINALVESAKL---RILHAEEQMKAC---LTEALRYNSEDRHLAVNLETTKWELADAEKELKW-LKSAVTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPQEVVITKCFHLFCNPCIQRNL 713 +S+ +E EA + E++++G+A+E M QN L +Q+++++D + L++E++K++Q ++ L ++ L Q + + + E + + ++ E + +C L + R+ E+ ++ L+T L++ ELK ++ + ++E ++ +R E+ NN + + + ++E+K L+C +C DR + VI KCFH+FC CI N+ Sbjct: 813 ESQKQELEALVMEIDSMGKAYEQMLEQNTRLTKQLSDKEDTHAHLMAENIKSQQTIRNSKEIQLAIEEKLNRNEEKLKSQGELMQKIEEKSNILQKQLSKVTEDLHSCSFDLEKHKRFVRENNAHSLELKTQLDHLSNLNAELKKKADDSIFALEREIDKAKRLDEEKQLLKKKLEKATSANNNNNNNNNNNNNNNNNNSSSS-----EEELKLINQRLRCTICNDRQKNYVIAKCFHVFCKECIYSNI 1056 The following BLAST results are available for this feature:
BLAST of CX297678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CX297678 ID=CX297678; Name=CX297678; organism=Citrus clementina; type=EST; length=713bpback to top |