CX297679

Overview
NameCX297679
Unique NameCX297679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 3
Query:   12 LQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPS----------SEPGVTCKGVPNSVSI 326
            L   PS  Q+   +A++D LSTHS DEEY+G  ++P  W+ DG I +AF EF              N+DP R+NR GAG++PY LL PS           E  V   G+PNS+SI
Sbjct:  823 LDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEP-AWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            +L+ +    Q    ++V++ LS H+ DE YLGER  P  W+ D    EAF  F              N+D   RNRCG   +PY LL+PSS+ G+T +G+PNS+SI
Sbjct:  753 YLKTITPKFQTLIDLSVIEILSRHASDEVYLGERDNP-NWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 857          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRR-NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            +L+ + S L     ++V++ LSTH+ DE YLG+R  P  W+ D +  +AF +F              N+DPS + NR G   LPY LL PSSE G+T +G+PNS+SI
Sbjct:  734 YLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            +L+ +    +    ++V++ LS H+ DE YLGER+ P  W+ D +  EAF  F              NSDPS RNR G   LPY LL  SSE G+T KG+PNS+SI
Sbjct:  760 YLRTITPKFETLIDLSVIEILSRHASDEIYLGERETP-NWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI 864          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 3
Query:   51 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            + +++ LS H+ DE+YLGER +   W+ D    EAF  F              N+D S RNR G   +PY LL PSSE G+TC+G+PNS+SI
Sbjct:  775 LTIIEVLSRHASDEQYLGERIEGDDWTTDSVPKEAFKRFGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSEEGLTCRGIPNSISI 866          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.306e-14
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            FL+ + + LQ    +++++ LSTHS DE YLG+R     W+ + E  EAF +F              N D + +NR G   +PY LL PSSE GVT +G+PNSVSI
Sbjct:  755 FLKTITAQLQTLLGISLIEILSTHSSDEVYLGQRDSKE-WAAEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEGGVTGRGIPNSVSI 859          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 42/106 (39.62%), Postives = 61/106 (57.55%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            +L+ + S  Q    ++V++ LS H+ DE YLG+R  P  W+ D +  +AF +F              N+D S  NR G   LPY LL P+SE G+TC+G+PNS+SI
Sbjct:  762 YLRTITSKFQTLVDLSVIEILSRHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPNSE-GLTCRGIPNSISI 865          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            +L+ +    Q    ++V++ LS H+ DE YLG+R+ P  W+ D +  +AF +F              N+DPS  +R G   LPY LL PSS+ G+T +G+PNS+SI
Sbjct:  760 YLRTITPKFQTLIDLSVIEILSRHASDEVYLGQRENPH-WTSDSKALQAFQKFGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSKEGLTFRGIPNSISI 864          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            +L+ +    Q    ++V++ LS H+ DE YLGER  P  W+ D    EAF +F              N+D   RNR G   +PY LL PSS+ G+T +G+PNS+SI
Sbjct:  757 YLKTITPKFQTLIDLSVIEILSRHASDELYLGERDNP-NWTSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKEGLTFRGIPNSISI 861          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 40/106 (37.74%), Postives = 55/106 (51.89%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            FL+ +    +    + V++ LS H+ DE YLG+R     W+ D    EAF  F              N D + RNR G   +PY LL PSSE G+T +G+PNS+SI
Sbjct:  748 FLKTITGKKETLIDLTVIEILSRHASDEFYLGQRDGGDYWTSDAGPLEAFKRFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSEEGLTFRGIPNSISI 853          
The following BLAST results are available for this feature:
BLAST of CX297679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
LOX21_HORVU6.926e-1641.74Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX3_SOYBN3.437e-1539.62Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX1_SOYBN4.489e-1541.12Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOXX_SOYBN7.658e-1542.45Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX1_LENCU7.658e-1543.48Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOX1_ARATH1.306e-1441.51Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX2_SOYBN2.910e-1439.62Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX2_PEA6.483e-1437.74Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX3_PEA1.444e-1338.68Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX4_SOYBN3.217e-1337.74Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06004B01SK RindPdig24 Citrus clementina cDNA clone C06004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297679 ID=CX297679; Name=CX297679; organism=Citrus clementina; type=EST; length=719bp
GAGGGTATTTCCTGCAGGCATTGCCAAGCGTACTCCAAGCGACCAAATAC
ATGGCCGTGGTAGACACATTGTCTACACATTCGCCGGACGAGGAGTACCT
CGGGGAACGACAACAGCCGTGGATTTGGTCCGGCGATGGTGAGATAACCG
AGGCATTTTTTGAATTTTCTGGGGAGATAAGACGGATAGAAAAAGAAATC
GAGAAAAGAAACAGTGATCCAAGCCGGAGGAACCGGTGCGGCGCCGGCGT
TTTACCATATGAGCTACTGGTACCGAGTTCGGAACCTGGAGTAACATGCA
AAGGTGTTCCAAATAGTGTATCAATATGAGCCCAAAGGGAGCTCACATGG
TCATGTTTGACCAACTTTGGTATATAACTTAAATATTAGATATTTGTAGT
CTGTAGAGATGCCGGCTATAAATGGTCATTATACCAATCAAATATTTTGT
ACCAAGCTAGATTCTAAGTAATTATGTGCCATTGAGAGCACATTAAACTT
AGAATTGTATATGCAATTGAGTATACAAGAATAATGTTTGTAGTTACCGT
ATCATATAATTCGTGGTGTAATAAGTAGACTTTTTCCTCGTGCCGAATTC
GGCACGAGGGTTCAGTACTCAACATCAAACAATCGATGCAGCAAAAGCCA
ACTGTGTGAATCTTCTGGAGTCAACAAGAAAGAACTAGAATCCCAGATGA
ATGAATTAGCTCTGAAGGA
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